Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47248 * 270.00342 * 3 2 1 5 5 H 1.48496 * 109.47094 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00155 * 3 2 1 7 7 C 1.37886 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99771 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47362 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47395 * 184.76883 * 10 9 7 12 12 C 1.46863 * 110.99812 * 308.14283 * 11 10 9 13 13 C 1.52983 * 109.55437 * 159.59707 * 12 11 10 14 14 C 1.53060 * 109.44368 * 112.94493 * 13 12 11 15 15 C 1.53146 * 109.26080 * 316.14004 * 14 13 12 16 16 C 1.53141 * 109.20270 * 285.21746 * 15 14 13 17 17 C 1.53056 * 109.27216 * 74.81697 * 16 15 14 18 18 C 1.46858 * 111.00108 * 184.09796 * 11 10 9 19 19 H 1.09000 * 109.46012 * 80.37183 * 18 11 10 20 20 C 1.50709 * 109.46114 * 320.39634 * 18 11 10 21 21 O 1.20824 * 120.00104 * 323.16669 * 20 18 11 22 22 O 1.34226 * 119.99613 * 143.16753 * 20 18 11 23 23 H 0.97002 * 120.00149 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47850 * 59.99322 * 9 7 2 25 25 H 1.09006 * 109.47211 * 299.99685 * 9 7 2 26 26 H 1.08999 * 109.46924 * 64.77024 * 10 9 7 27 27 H 1.09002 * 109.47003 * 304.77245 * 10 9 7 28 28 H 1.09000 * 109.45455 * 279.61694 * 12 11 10 29 29 H 1.09002 * 109.45984 * 39.57038 * 12 11 10 30 30 H 1.09006 * 109.47278 * 232.92879 * 13 12 11 31 31 H 1.08992 * 109.47900 * 352.93862 * 13 12 11 32 32 H 1.08995 * 109.50996 * 76.08218 * 14 13 12 33 33 H 1.09006 * 109.50294 * 196.16883 * 14 13 12 34 34 H 1.08997 * 109.51534 * 45.13722 * 15 14 13 35 35 H 1.08997 * 109.51112 * 165.24097 * 15 14 13 36 36 H 1.09006 * 109.50424 * 314.87691 * 16 15 14 37 37 H 1.08998 * 109.50413 * 194.75988 * 16 15 14 38 38 H 1.08998 * 109.47081 * 283.86799 * 17 16 15 39 39 H 1.09002 * 109.46871 * 163.85748 * 17 16 15 40 40 H 0.96700 * 116.99487 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 7 1.5143 -4.9311 -0.1190 12 6 0.4517 -5.0208 0.8908 13 6 -0.5859 -6.0556 0.4516 14 6 -0.5473 -7.2523 1.4051 15 6 0.9107 -7.6284 1.6849 16 6 1.4913 -8.3402 0.4595 17 6 1.7669 -7.3108 -0.6391 18 6 2.4293 -6.0760 -0.0258 19 1 2.6618 -6.2707 1.0212 20 6 3.7006 -5.7648 -0.7729 21 8 3.6580 -5.1277 -1.7987 22 8 4.8802 -6.1955 -0.2988 23 1 -0.4850 0.8400 -0.0004 24 1 0.6245 -2.5564 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8142 -3.6545 0.9269 27 1 2.9267 -3.5567 -0.8468 28 1 0.8828 -5.3217 1.8457 29 1 -0.0288 -4.0485 0.9997 30 1 -1.5788 -5.6062 0.4727 31 1 -0.3599 -6.3900 -0.5608 32 1 -1.0411 -6.9887 2.3403 33 1 -1.0608 -8.0984 0.9483 34 1 1.4868 -6.7259 1.8888 35 1 0.9562 -8.2922 2.5482 36 1 0.7772 -9.0789 0.0954 37 1 2.4217 -8.8372 0.7343 38 1 0.8275 -7.0227 -1.1109 39 1 2.4305 -7.7459 -1.3864 40 1 5.6681 -5.9711 -0.8125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301024455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -76.148169 kcal Electronic energy + Delta-G solvation = -20328.419102 eV Core-core repulsion = 17336.639531 eV Total energy + Delta-G solvation = -2991.779572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71893 -38.78486 -36.06145 -35.15314 -33.04293 -32.69581 -29.99439 -27.49154 -26.93168 -24.63087 -23.42501 -22.00293 -20.61265 -19.89752 -19.00359 -18.03451 -16.97441 -16.29778 -15.73104 -15.32630 -14.77768 -14.48407 -14.41172 -13.97790 -13.82430 -13.38833 -12.81595 -12.68411 -12.28423 -12.06570 -11.80776 -11.63315 -11.30147 -11.15954 -10.94508 -10.88751 -10.84304 -10.56480 -10.48636 -10.33302 -10.07288 -9.87260 -9.61455 -9.29733 -9.00212 -8.31287 -7.76696 -5.98506 -4.00127 2.39752 3.09451 3.34000 3.39726 3.43009 4.19830 4.50191 4.80589 4.91590 4.97877 5.11702 5.19980 5.33285 5.35346 5.38110 5.46427 5.57860 5.67083 5.75620 5.94387 6.03611 6.04518 6.12344 6.13298 6.17964 6.32492 6.42476 6.44100 6.59745 6.63144 6.75076 7.01400 7.39634 7.51639 7.74452 7.88791 8.05676 8.13543 8.44647 9.05691 9.63107 11.12951 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.006220 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.355094 B = 4500.366162 C = 5401.740688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.040 3.960 11 N -0.515 5.515 12 C 0.039 3.961 13 C -0.128 4.128 14 C -0.118 4.118 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.091 3.909 19 H 0.078 0.922 20 C 0.475 3.525 21 O -0.488 6.488 22 O -0.523 6.523 23 H 0.260 0.740 24 H 0.028 0.972 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -17.282 2.699 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.086 4.086 11 N -0.242 5.242 12 C -0.088 4.088 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.180 4.180 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.019 4.019 19 H 0.095 0.905 20 C 0.316 3.684 21 O -0.373 6.373 22 O -0.335 6.335 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.080 0.920 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.162 -17.091 2.174 17.363 hybrid contribution 1.453 1.186 0.447 1.928 sum 3.615 -15.904 2.621 16.519 Atomic orbital electron populations 1.69958 1.05989 1.26585 1.50761 1.24974 0.94842 0.99146 0.95279 0.86587 0.79783 0.83437 0.78157 1.20596 1.21215 1.19967 1.21159 0.92969 0.90977 1.50746 0.92889 1.19164 0.93834 0.90167 0.97677 1.22757 0.98286 0.88311 0.99253 1.62359 1.11475 1.01093 1.49281 1.22568 0.92666 1.01516 0.92063 1.21957 0.98992 0.95152 1.00461 1.21693 0.95981 0.98289 0.99631 1.22153 0.97180 1.01250 0.97467 1.21675 1.00764 0.97494 0.95439 1.21900 1.02492 0.92793 0.97995 1.21580 0.87180 0.94585 0.98534 0.90490 1.23538 0.85022 0.75633 0.84222 1.90730 1.87042 1.35338 1.24200 1.84542 1.17695 1.74335 1.56889 0.92997 0.95358 0.96306 0.96716 0.89802 0.94092 0.88207 0.91794 0.89823 0.92329 0.92145 0.90108 0.92304 0.91434 0.92139 0.88077 0.91990 0.73576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.76 4.39 -27.89 -0.12 0.64 16 10 C 0.04 0.89 4.22 -3.82 -0.02 0.88 16 11 N -0.52 -9.48 4.18 -228.13 -0.95 -10.44 16 12 C 0.04 0.64 4.95 -3.85 -0.02 0.62 16 13 C -0.13 -1.73 5.55 -26.71 -0.15 -1.88 16 14 C -0.12 -1.28 5.73 -26.63 -0.15 -1.43 16 15 C -0.14 -1.52 5.37 -26.58 -0.14 -1.67 16 16 C -0.12 -1.17 5.73 -26.63 -0.15 -1.32 16 17 C -0.11 -1.43 5.20 -26.72 -0.14 -1.57 16 18 C 0.09 1.38 2.11 -68.90 -0.15 1.24 16 19 H 0.08 1.10 5.40 -51.93 -0.28 0.82 16 20 C 0.48 7.72 5.93 36.01 0.21 7.93 16 21 O -0.49 -9.66 15.39 -18.75 -0.29 -9.95 16 22 O -0.52 -6.64 13.42 -39.25 -0.53 -7.16 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.02 0.51 6.19 -51.93 -0.32 0.19 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 2.02 5.49 -51.93 -0.28 1.73 16 28 H 0.04 0.63 5.40 -51.93 -0.28 0.35 16 29 H 0.10 1.94 5.26 -51.93 -0.27 1.67 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.16 4.88 -51.93 -0.25 0.91 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 7.85 -51.93 -0.41 0.17 16 34 H 0.08 0.99 2.89 -51.93 -0.15 0.84 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.35 4.88 -51.93 -0.25 1.10 16 39 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 40 H 0.41 3.43 9.10 45.56 0.41 3.84 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -32.67 298.57 -7.76 -40.43 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.97 Total: 2.28 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.24 Total: -10.38 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.22 Total: -36.78 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.82 Total: -17.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.67 -7.76 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301024455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.717 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds