Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47248 * 270.00342 * 3 2 1 5 5 H 1.48496 * 109.47094 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00155 * 3 2 1 7 7 C 1.37886 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99771 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00015 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47362 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47395 * 184.76883 * 10 9 7 12 12 C 1.46863 * 110.99812 * 308.14283 * 11 10 9 13 13 C 1.52983 * 109.55437 * 159.59707 * 12 11 10 14 14 C 1.53060 * 109.44368 * 112.94493 * 13 12 11 15 15 C 1.53146 * 109.26080 * 316.14004 * 14 13 12 16 16 C 1.53141 * 109.20270 * 285.21746 * 15 14 13 17 17 C 1.53056 * 109.27216 * 74.81697 * 16 15 14 18 18 C 1.46858 * 111.00108 * 184.09796 * 11 10 9 19 19 H 1.09000 * 109.46012 * 80.37183 * 18 11 10 20 20 C 1.50709 * 109.46114 * 320.39634 * 18 11 10 21 21 O 1.20824 * 120.00104 * 323.16669 * 20 18 11 22 22 O 1.34226 * 119.99613 * 143.16753 * 20 18 11 23 23 H 0.97002 * 120.00149 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47850 * 59.99322 * 9 7 2 25 25 H 1.09006 * 109.47211 * 299.99685 * 9 7 2 26 26 H 1.08999 * 109.46924 * 64.77024 * 10 9 7 27 27 H 1.09002 * 109.47003 * 304.77245 * 10 9 7 28 28 H 1.09000 * 109.45455 * 279.61694 * 12 11 10 29 29 H 1.09002 * 109.45984 * 39.57038 * 12 11 10 30 30 H 1.09006 * 109.47278 * 232.92879 * 13 12 11 31 31 H 1.08992 * 109.47900 * 352.93862 * 13 12 11 32 32 H 1.08995 * 109.50996 * 76.08218 * 14 13 12 33 33 H 1.09006 * 109.50294 * 196.16883 * 14 13 12 34 34 H 1.08997 * 109.51534 * 45.13722 * 15 14 13 35 35 H 1.08997 * 109.51112 * 165.24097 * 15 14 13 36 36 H 1.09006 * 109.50424 * 314.87691 * 16 15 14 37 37 H 1.08998 * 109.50413 * 194.75988 * 16 15 14 38 38 H 1.08998 * 109.47081 * 283.86799 * 17 16 15 39 39 H 1.09002 * 109.46871 * 163.85748 * 17 16 15 40 40 H 0.96700 * 116.99487 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0027 11 7 1.5143 -4.9311 -0.1190 12 6 0.4517 -5.0208 0.8908 13 6 -0.5859 -6.0556 0.4516 14 6 -0.5473 -7.2523 1.4051 15 6 0.9107 -7.6284 1.6849 16 6 1.4913 -8.3402 0.4595 17 6 1.7669 -7.3108 -0.6391 18 6 2.4293 -6.0760 -0.0258 19 1 2.6618 -6.2707 1.0212 20 6 3.7006 -5.7648 -0.7729 21 8 3.6580 -5.1277 -1.7987 22 8 4.8802 -6.1955 -0.2988 23 1 -0.4850 0.8400 -0.0004 24 1 0.6245 -2.5564 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8142 -3.6545 0.9269 27 1 2.9267 -3.5567 -0.8468 28 1 0.8828 -5.3217 1.8457 29 1 -0.0288 -4.0485 0.9997 30 1 -1.5788 -5.6062 0.4727 31 1 -0.3599 -6.3900 -0.5608 32 1 -1.0411 -6.9887 2.3403 33 1 -1.0608 -8.0984 0.9483 34 1 1.4868 -6.7259 1.8888 35 1 0.9562 -8.2922 2.5482 36 1 0.7772 -9.0789 0.0954 37 1 2.4217 -8.8372 0.7343 38 1 0.8275 -7.0227 -1.1109 39 1 2.4305 -7.7459 -1.3864 40 1 5.6681 -5.9711 -0.8125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301024455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -98.835377 kcal Electronic energy + Delta-G solvation = -20329.402893 eV Core-core repulsion = 17336.639531 eV Total energy + Delta-G solvation = -2992.763363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.98549 -39.97388 -37.28503 -36.61110 -34.92031 -33.95405 -31.77459 -28.87646 -28.07804 -26.36150 -24.88817 -23.33466 -21.82480 -21.47001 -20.03868 -19.26833 -18.72662 -17.89401 -17.07162 -16.61213 -16.37327 -15.95580 -15.73191 -15.51915 -15.16429 -14.54262 -14.23200 -14.06026 -13.77995 -13.39408 -13.16952 -13.00248 -12.91730 -12.66338 -12.50472 -12.39982 -12.07954 -11.94153 -11.83349 -11.55760 -11.38676 -11.34445 -11.25243 -11.12738 -10.65493 -10.48407 -9.21516 -8.23311 -6.34490 1.11469 1.36867 1.39200 1.49782 1.96269 2.37394 2.87151 3.09636 3.82211 3.92105 4.00888 4.09501 4.12346 4.22281 4.30196 4.33221 4.39796 4.47510 4.66149 4.70614 4.82839 4.88705 4.99492 5.11488 5.14581 5.23088 5.26439 5.32727 5.36853 5.39675 5.53746 5.57181 5.59853 5.70171 5.75645 6.04919 6.15161 6.27037 6.80110 6.97818 7.33946 8.88676 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.006220 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.355094 B = 4500.366162 C = 5401.740688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.040 3.960 10 C 0.060 3.940 11 N -0.527 5.527 12 C 0.041 3.959 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.143 4.143 16 C -0.108 4.108 17 C -0.110 4.110 18 C 0.088 3.912 19 H 0.094 0.906 20 C 0.478 3.522 21 O -0.532 6.532 22 O -0.509 6.509 23 H 0.265 0.735 24 H -0.008 1.008 25 H 0.006 0.994 26 H 0.015 0.985 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 -18.860 3.585 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.587 4.587 8 H 0.070 0.930 9 C 0.003 3.997 10 C -0.067 4.067 11 N -0.254 5.254 12 C -0.085 4.085 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.179 4.179 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.021 4.021 19 H 0.111 0.889 20 C 0.320 3.680 21 O -0.421 6.421 22 O -0.322 6.322 23 H 0.074 0.926 24 H 0.010 0.990 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 3.056 -18.701 3.076 19.197 hybrid contribution 1.197 1.632 0.175 2.031 sum 4.252 -17.069 3.251 17.889 Atomic orbital electron populations 1.70085 1.07658 1.27877 1.51125 1.25923 0.95811 1.03169 0.94439 0.85442 0.78672 0.78394 0.78504 1.19915 1.20146 1.18879 1.21564 0.93226 0.92500 1.51377 0.92951 1.18952 0.93934 0.91606 0.95239 1.22298 0.96887 0.89136 0.98405 1.62265 1.12186 1.00530 1.50370 1.22549 0.92745 1.00590 0.92664 1.21910 0.97443 0.95487 1.01213 1.21666 0.96771 0.97372 0.99098 1.22127 0.96381 1.00848 0.98592 1.21669 1.02020 0.96837 0.94060 1.21903 1.01745 0.92101 0.99023 1.21780 0.86650 0.94045 0.99646 0.88900 1.23751 0.86126 0.74631 0.83485 1.90720 1.87772 1.37433 1.26138 1.84488 1.17623 1.73452 1.56671 0.92601 0.98984 0.97572 0.96653 0.91544 0.92592 0.92133 0.92250 0.90062 0.91835 0.90067 0.92044 0.90180 0.89457 0.90719 0.89079 0.91381 0.71261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.55 -32.92 9.11 25.60 0.23 -32.69 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.04 2.23 4.39 29.85 0.13 2.36 16 10 C 0.06 2.77 4.22 86.30 0.36 3.14 16 11 N -0.53 -19.83 4.18 -875.66 -3.66 -23.49 16 12 C 0.04 1.40 4.95 86.30 0.43 1.82 16 13 C -0.12 -3.26 5.55 30.61 0.17 -3.09 16 14 C -0.11 -2.12 5.73 30.66 0.18 -1.95 16 15 C -0.14 -2.56 5.37 30.69 0.16 -2.39 16 16 C -0.11 -1.78 5.73 30.66 0.18 -1.61 16 17 C -0.11 -2.55 5.20 30.60 0.16 -2.39 16 18 C 0.09 2.59 2.11 44.17 0.09 2.68 16 19 H 0.09 2.49 5.40 -2.39 -0.01 2.47 16 20 C 0.48 15.21 5.93 71.24 0.42 15.63 16 21 O -0.53 -21.36 15.39 21.97 0.34 -21.02 16 22 O -0.51 -11.96 13.42 -51.37 -0.69 -12.65 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 25 H 0.01 0.36 6.19 -2.38 -0.01 0.34 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 3.33 5.49 -2.39 -0.01 3.31 16 28 H 0.06 1.71 5.40 -2.39 -0.01 1.69 16 29 H 0.06 2.51 5.26 -2.39 -0.01 2.50 16 30 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.08 2.21 4.88 -2.39 -0.01 2.20 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.26 7.85 -2.38 -0.02 1.24 16 34 H 0.06 1.35 2.89 -2.39 -0.01 1.35 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.16 7.85 -2.38 -0.02 1.14 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 2.33 4.88 -2.39 -0.01 2.32 16 39 H 0.07 1.50 7.60 -2.39 -0.02 1.48 16 40 H 0.43 6.38 9.10 -74.06 -0.67 5.70 16 Total: -1.00 -72.77 298.57 1.66 -71.11 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.38 Total: 13.44 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 2.98 Total: -17.73 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.38 Total: -80.83 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.35 Total: -33.68 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.77 1.66 -71.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301024455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.730 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds