Wall clock time and date at job start Mon Mar 30 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99697 * 2 1 4 4 C 1.53002 * 109.47146 * 284.54678 * 3 2 1 5 5 C 1.50694 * 109.47205 * 180.02562 * 4 3 2 6 6 H 1.07993 * 120.00313 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99691 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99694 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46949 * 60.00253 * 9 7 5 11 11 H 1.48501 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47349 * 300.00417 * 9 7 5 13 13 C 1.46901 * 110.99996 * 123.94951 * 2 1 3 14 14 C 1.50697 * 109.47257 * 306.69001 * 13 2 1 15 15 O 1.20824 * 120.00212 * 134.91529 * 14 13 2 16 16 O 1.34231 * 119.99988 * 314.91769 * 14 13 2 17 17 C 1.52998 * 109.47259 * 186.68851 * 13 2 1 18 18 C 1.53000 * 109.47354 * 180.02562 * 17 13 2 19 19 C 1.52995 * 109.47030 * 59.99699 * 18 17 13 20 20 C 1.53000 * 109.47634 * 300.00177 * 19 18 17 21 21 C 1.52999 * 109.46733 * 60.00032 * 20 19 18 22 22 H 1.08997 * 109.47611 * 296.04385 * 1 2 3 23 23 H 1.08998 * 109.47328 * 56.05095 * 1 2 3 24 24 H 1.09005 * 109.46938 * 176.04616 * 1 2 3 25 25 H 1.08995 * 109.47313 * 44.54557 * 3 2 1 26 26 H 1.08998 * 109.46902 * 164.55316 * 3 2 1 27 27 H 1.09000 * 109.47243 * 300.00462 * 4 3 2 28 28 H 1.09004 * 109.46647 * 59.99809 * 4 3 2 29 29 H 0.96999 * 120.00103 * 179.97438 * 8 7 5 30 30 H 0.96696 * 117.00161 * 180.02562 * 16 14 13 31 31 H 1.09003 * 109.47236 * 59.99870 * 17 13 2 32 32 H 1.09008 * 109.46969 * 300.00279 * 17 13 2 33 33 H 1.09002 * 109.46431 * 299.99879 * 18 17 13 34 34 H 1.08996 * 109.46751 * 180.02562 * 18 17 13 35 35 H 1.09001 * 109.46868 * 60.00577 * 19 18 17 36 36 H 1.09000 * 109.46772 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47159 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46877 * 300.00613 * 20 19 18 39 39 H 1.08994 * 109.47358 * 60.00265 * 21 20 19 40 40 H 1.09007 * 109.47065 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8398 1.9775 -1.3963 5 6 2.3804 3.3841 -1.3964 6 1 2.7931 3.8041 -0.4912 7 6 2.3470 4.1353 -2.5522 8 7 1.8430 3.6244 -3.6543 9 14 3.0164 5.8792 -2.5522 10 1 4.4538 5.8577 -2.1797 11 1 2.8644 6.4678 -3.9071 12 1 2.2627 6.6988 -1.5697 13 6 1.9954 -0.7659 1.1377 14 6 1.3829 -0.2526 2.4153 15 8 0.9697 -1.0305 3.2423 16 8 1.2965 1.0688 2.6346 17 6 3.5157 -0.6057 1.2006 18 6 4.0641 -1.4039 2.3851 19 6 3.7139 -2.8829 2.2093 20 6 2.1936 -3.0431 2.1464 21 6 1.6453 -2.2449 0.9619 22 1 -0.3634 0.4512 0.9233 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 1.4418 1.9731 0.7208 26 1 3.0503 1.3557 0.2737 27 1 2.3933 1.3758 -2.1172 28 1 0.7849 1.9931 -1.6700 29 1 1.8191 4.1530 -4.4672 30 1 0.8962 1.3502 3.4687 31 1 3.7652 0.4480 1.3253 32 1 3.9587 -0.9770 0.2764 33 1 3.6211 -1.0330 3.3093 34 1 5.1471 -1.2894 2.4301 35 1 4.1569 -3.2537 1.2850 36 1 4.1050 -3.4515 3.0529 37 1 1.9443 -4.0967 2.0207 38 1 1.7507 -2.6722 3.0706 39 1 2.0883 -2.6158 0.0376 40 1 0.5621 -2.3587 0.9173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309283073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:43 Heat of formation + Delta-G solvation = -95.014013 kcal Electronic energy + Delta-G solvation = -20525.286993 eV Core-core repulsion = 17532.689337 eV Total energy + Delta-G solvation = -2992.597656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18083 -38.00996 -36.54666 -35.37959 -33.04871 -31.02425 -30.40420 -28.86677 -25.82778 -24.47991 -23.36488 -22.48151 -21.05677 -19.94437 -19.42722 -17.87406 -16.70063 -16.05748 -15.83036 -15.34356 -14.56982 -14.25416 -14.01971 -13.88324 -13.63007 -13.38647 -13.11984 -12.45643 -12.25487 -12.00315 -11.95334 -11.85242 -11.55590 -11.24496 -11.19740 -10.95874 -10.91247 -10.86735 -10.56006 -10.30876 -10.08025 -9.76860 -9.47579 -9.36215 -9.09351 -8.30469 -7.91000 -5.97506 -3.99711 2.30295 3.16879 3.34410 3.38986 3.41125 4.22095 4.50423 4.65041 4.76122 5.03044 5.13853 5.23378 5.38347 5.40741 5.51601 5.54550 5.63171 5.70378 5.79033 5.83499 6.01520 6.05936 6.13794 6.21093 6.23676 6.26427 6.33984 6.38603 6.44690 6.64229 6.86470 7.04059 7.38308 7.41387 7.78026 7.92090 8.04961 8.10416 8.45889 9.07643 9.63727 11.13823 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.005431 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.024972 B = 5154.089983 C = 5209.066196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.516 5.516 3 C 0.047 3.953 4 C 0.032 3.968 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 C 0.460 3.540 15 O -0.521 6.521 16 O -0.504 6.504 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.143 4.143 21 C -0.092 4.092 22 H 0.020 0.980 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.395 0.605 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -10.843 11.614 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.078 4.078 4 C -0.006 4.006 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.035 3.965 14 C 0.301 3.699 15 O -0.409 6.409 16 O -0.314 6.314 17 C -0.152 4.152 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.181 4.181 21 C -0.129 4.129 22 H 0.038 0.962 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.253 0.747 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.120 -11.351 10.831 15.729 hybrid contribution -0.301 1.636 1.190 2.045 sum 0.819 -9.715 12.021 15.477 Atomic orbital electron populations 1.22530 0.87645 1.01467 1.01310 1.62371 1.07750 1.17195 1.36622 1.22758 0.99258 0.84399 1.01402 1.19052 0.97246 0.94440 0.89851 1.21147 1.40202 0.98669 0.95904 0.92830 1.24982 0.95473 0.98175 0.95626 1.69963 1.45605 1.37081 1.00631 0.86678 0.79531 0.84886 0.76992 1.20252 1.21326 1.20340 1.21396 0.96276 0.95559 0.83245 1.25327 0.75133 0.79868 0.89537 1.90511 1.46199 1.56725 1.47453 1.84897 1.75769 1.26210 1.44533 1.21833 0.91301 1.01922 1.00128 1.21609 1.00858 0.95691 0.97903 1.21534 0.96529 0.95924 1.01536 1.22029 0.95535 0.99553 1.00945 1.21457 1.01333 0.90641 0.99508 0.96167 0.89703 0.91983 0.93642 0.91243 0.95878 0.96711 0.92987 0.74651 0.89769 0.89101 0.92606 0.91303 0.91917 0.92311 0.92274 0.88299 0.89849 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.76 60.06 0.53 0.83 16 2 N -0.52 -9.14 4.51 -228.51 -1.03 -10.17 16 3 C 0.05 0.98 3.88 -3.82 -0.01 0.96 16 4 C 0.03 0.81 5.08 -27.89 -0.14 0.67 16 5 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 6 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.13 1.93 0.45 -132.75 -0.06 1.87 16 14 C 0.46 7.00 4.23 36.00 0.15 7.15 16 15 O -0.52 -8.37 13.95 -18.75 -0.26 -8.63 16 16 O -0.50 -7.19 10.14 -39.26 -0.40 -7.58 16 17 C -0.11 -1.61 4.21 -26.73 -0.11 -1.72 16 18 C -0.12 -1.47 5.70 -26.73 -0.15 -1.62 16 19 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 20 C -0.14 -1.75 5.63 -26.73 -0.15 -1.90 16 21 C -0.09 -1.24 4.44 -26.73 -0.12 -1.35 16 22 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 23 H 0.08 1.53 6.75 -51.93 -0.35 1.18 16 24 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 25 H 0.05 0.95 6.11 -51.93 -0.32 0.64 16 26 H 0.07 1.40 5.12 -51.93 -0.27 1.13 16 27 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.01 0.40 6.85 -51.93 -0.36 0.04 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.40 3.86 9.10 45.56 0.41 4.28 16 31 H 0.08 1.27 5.91 -51.93 -0.31 0.97 16 32 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 33 H 0.06 0.71 7.17 -51.93 -0.37 0.34 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.39 5.04 -51.93 -0.26 1.13 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.90 6.57 -51.92 -0.34 0.56 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -31.07 300.31 -7.42 -38.49 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.33 Total: 2.72 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.64 Total: -9.87 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.29 Total: -36.15 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.66 Total: -16.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.07 -7.42 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309283073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.519 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds