Wall clock time and date at job start Mon Mar 30 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99697 * 2 1 4 4 C 1.53002 * 109.47146 * 284.54678 * 3 2 1 5 5 C 1.50694 * 109.47205 * 180.02562 * 4 3 2 6 6 H 1.07993 * 120.00313 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99691 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99694 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46949 * 60.00253 * 9 7 5 11 11 H 1.48501 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47349 * 300.00417 * 9 7 5 13 13 C 1.46901 * 110.99996 * 123.94951 * 2 1 3 14 14 C 1.50697 * 109.47257 * 306.69001 * 13 2 1 15 15 O 1.20824 * 120.00212 * 134.91529 * 14 13 2 16 16 O 1.34231 * 119.99988 * 314.91769 * 14 13 2 17 17 C 1.52998 * 109.47259 * 186.68851 * 13 2 1 18 18 C 1.53000 * 109.47354 * 180.02562 * 17 13 2 19 19 C 1.52995 * 109.47030 * 59.99699 * 18 17 13 20 20 C 1.53000 * 109.47634 * 300.00177 * 19 18 17 21 21 C 1.52999 * 109.46733 * 60.00032 * 20 19 18 22 22 H 1.08997 * 109.47611 * 296.04385 * 1 2 3 23 23 H 1.08998 * 109.47328 * 56.05095 * 1 2 3 24 24 H 1.09005 * 109.46938 * 176.04616 * 1 2 3 25 25 H 1.08995 * 109.47313 * 44.54557 * 3 2 1 26 26 H 1.08998 * 109.46902 * 164.55316 * 3 2 1 27 27 H 1.09000 * 109.47243 * 300.00462 * 4 3 2 28 28 H 1.09004 * 109.46647 * 59.99809 * 4 3 2 29 29 H 0.96999 * 120.00103 * 179.97438 * 8 7 5 30 30 H 0.96696 * 117.00161 * 180.02562 * 16 14 13 31 31 H 1.09003 * 109.47236 * 59.99870 * 17 13 2 32 32 H 1.09008 * 109.46969 * 300.00279 * 17 13 2 33 33 H 1.09002 * 109.46431 * 299.99879 * 18 17 13 34 34 H 1.08996 * 109.46751 * 180.02562 * 18 17 13 35 35 H 1.09001 * 109.46868 * 60.00577 * 19 18 17 36 36 H 1.09000 * 109.46772 * 179.97438 * 19 18 17 37 37 H 1.08994 * 109.47159 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46877 * 300.00613 * 20 19 18 39 39 H 1.08994 * 109.47358 * 60.00265 * 21 20 19 40 40 H 1.09007 * 109.47065 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8398 1.9775 -1.3963 5 6 2.3804 3.3841 -1.3964 6 1 2.7931 3.8041 -0.4912 7 6 2.3470 4.1353 -2.5522 8 7 1.8430 3.6244 -3.6543 9 14 3.0164 5.8792 -2.5522 10 1 4.4538 5.8577 -2.1797 11 1 2.8644 6.4678 -3.9071 12 1 2.2627 6.6988 -1.5697 13 6 1.9954 -0.7659 1.1377 14 6 1.3829 -0.2526 2.4153 15 8 0.9697 -1.0305 3.2423 16 8 1.2965 1.0688 2.6346 17 6 3.5157 -0.6057 1.2006 18 6 4.0641 -1.4039 2.3851 19 6 3.7139 -2.8829 2.2093 20 6 2.1936 -3.0431 2.1464 21 6 1.6453 -2.2449 0.9619 22 1 -0.3634 0.4512 0.9233 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0709 25 1 1.4418 1.9731 0.7208 26 1 3.0503 1.3557 0.2737 27 1 2.3933 1.3758 -2.1172 28 1 0.7849 1.9931 -1.6700 29 1 1.8191 4.1530 -4.4672 30 1 0.8962 1.3502 3.4687 31 1 3.7652 0.4480 1.3253 32 1 3.9587 -0.9770 0.2764 33 1 3.6211 -1.0330 3.3093 34 1 5.1471 -1.2894 2.4301 35 1 4.1569 -3.2537 1.2850 36 1 4.1050 -3.4515 3.0529 37 1 1.9443 -4.0967 2.0207 38 1 1.7507 -2.6722 3.0706 39 1 2.0883 -2.6158 0.0376 40 1 0.5621 -2.3587 0.9173 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309283073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:43 Heat of formation + Delta-G solvation = -115.682981 kcal Electronic energy + Delta-G solvation = -20526.183267 eV Core-core repulsion = 17532.689337 eV Total energy + Delta-G solvation = -2993.493930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.37520 -39.20628 -37.82428 -36.60469 -35.08237 -32.33610 -31.79875 -30.30971 -27.49602 -25.80751 -24.94048 -23.64097 -22.38562 -21.32297 -20.64880 -19.11960 -18.52252 -17.46138 -17.17733 -16.52529 -16.45074 -15.65439 -15.38438 -15.00932 -14.79488 -14.65661 -14.47060 -14.04872 -13.72998 -13.44468 -13.24883 -13.03653 -12.98895 -12.76803 -12.68407 -12.50186 -12.38480 -12.12427 -11.96396 -11.70237 -11.39130 -11.28358 -11.16699 -10.85818 -10.73844 -10.46563 -9.36288 -8.15643 -6.26225 1.10154 1.42795 1.45539 1.53345 2.05939 2.43187 2.93048 3.17978 3.53851 3.69168 3.99405 4.09995 4.22813 4.25976 4.37511 4.41886 4.50342 4.56456 4.59938 4.67798 4.85615 4.91181 4.92640 5.03999 5.09150 5.19212 5.22742 5.24322 5.29011 5.32792 5.38947 5.52126 5.68246 5.80688 5.83434 6.08646 6.13104 6.34864 6.90932 6.95941 7.42520 8.96225 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031702 B = 0.005431 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.024972 B = 5154.089983 C = 5209.066196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.068 3.932 4 C 0.040 3.960 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.124 3.876 14 C 0.463 3.537 15 O -0.529 6.529 16 O -0.513 6.513 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.090 4.090 22 H 0.022 0.978 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.075 0.925 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.263 0.737 30 H 0.415 0.585 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -11.119 12.890 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.248 5.248 3 C -0.059 4.059 4 C 0.002 3.998 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.033 3.967 14 C 0.305 3.695 15 O -0.418 6.418 16 O -0.326 6.326 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.176 4.176 21 C -0.128 4.128 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.276 0.724 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.017 -11.631 12.139 16.932 hybrid contribution -0.620 1.691 0.812 1.975 sum 1.397 -9.940 12.951 16.386 Atomic orbital electron populations 1.22499 0.87175 1.02529 1.00447 1.62243 1.08286 1.15590 1.38726 1.22340 0.99784 0.85908 0.97833 1.18883 0.94869 0.93836 0.92205 1.21579 1.40202 0.99813 0.96289 0.92195 1.25918 0.95634 1.02810 0.95154 1.70104 1.46819 1.38933 1.01346 0.85541 0.79262 0.79260 0.77206 1.19077 1.20996 1.19326 1.21520 0.96889 0.96045 0.82296 1.25167 0.74919 0.80032 0.89405 1.90523 1.46528 1.56947 1.47759 1.84827 1.75893 1.25789 1.46048 1.21834 0.90621 1.01531 1.01209 1.21586 1.01725 0.95986 0.96223 1.21546 0.95674 0.95319 1.02775 1.21972 0.96258 1.00127 0.99248 1.21490 1.01306 0.89534 1.00482 0.95922 0.91827 0.89749 0.93967 0.90688 0.98854 0.99245 0.92867 0.72377 0.91145 0.89193 0.93475 0.89594 0.90944 0.90667 0.90573 0.89949 0.89392 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 8.76 127.69 1.12 1.83 16 2 N -0.52 -18.59 4.51 -876.86 -3.95 -22.54 16 3 C 0.07 2.82 3.88 86.30 0.34 3.15 16 4 C 0.04 2.10 5.08 29.85 0.15 2.25 16 5 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.12 3.63 0.45 2.78 0.00 3.63 16 14 C 0.46 13.54 4.23 71.24 0.30 13.84 16 15 O -0.53 -16.22 13.95 21.97 0.31 -15.91 16 16 O -0.51 -14.07 10.14 -51.43 -0.52 -14.59 16 17 C -0.11 -3.09 4.21 30.59 0.13 -2.96 16 18 C -0.12 -2.55 5.70 30.59 0.17 -2.38 16 19 C -0.12 -2.23 5.92 30.59 0.18 -2.05 16 20 C -0.14 -3.07 5.63 30.59 0.17 -2.89 16 21 C -0.09 -2.29 4.44 30.60 0.14 -2.16 16 22 H 0.02 0.73 6.52 -2.39 -0.02 0.72 16 23 H 0.06 2.38 6.75 -2.39 -0.02 2.36 16 24 H 0.08 2.41 6.49 -2.38 -0.02 2.39 16 25 H 0.04 1.78 6.11 -2.39 -0.01 1.76 16 26 H 0.07 3.03 5.12 -2.39 -0.01 3.01 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H -0.01 -0.62 6.85 -2.38 -0.02 -0.64 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.42 7.52 9.10 -74.06 -0.67 6.85 16 31 H 0.07 2.08 5.91 -2.39 -0.01 2.07 16 32 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.05 1.11 7.17 -2.39 -0.02 1.10 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.16 5.04 -2.39 -0.01 2.14 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 1.61 6.57 -2.38 -0.02 1.60 16 Total: -1.00 -66.49 300.31 1.91 -64.58 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.37 Total: 16.40 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.40 Total: -17.48 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.67 Total: -79.05 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.21 Total: -30.51 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.49 1.91 -64.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309283073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.098 kcal (2) G-P(sol) polarization free energy of solvation -66.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds