Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99885 * 2 1 4 4 H 1.48506 * 109.46905 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00098 * 3 2 1 6 6 H 1.48498 * 109.47149 * 150.00256 * 3 2 1 7 7 C 1.37871 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00072 * 359.72305 * 7 2 1 10 10 C 1.53001 * 109.46981 * 180.27793 * 9 7 2 11 11 C 1.53002 * 109.46752 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47083 * 179.97438 * 11 10 9 13 13 C 1.47847 * 110.99960 * 295.94819 * 12 11 10 14 14 C 1.54915 * 104.79378 * 213.63325 * 13 12 11 15 15 C 1.55140 * 101.65148 * 37.06878 * 14 13 12 16 16 C 1.47438 * 111.00368 * 175.09852 * 12 11 10 17 17 H 1.08995 * 109.89653 * 242.82816 * 16 12 11 18 18 C 1.53000 * 109.88768 * 3.85582 * 16 12 11 19 19 C 1.53000 * 109.47596 * 182.46111 * 18 16 12 20 20 C 1.50695 * 109.47400 * 175.36053 * 19 18 16 21 21 O 1.20821 * 119.99980 * 359.97438 * 20 19 18 22 22 O 1.34234 * 120.00047 * 179.97438 * 20 19 18 23 23 H 0.96998 * 120.00100 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46808 * 300.27682 * 9 7 2 25 25 H 1.08996 * 109.47210 * 60.27659 * 9 7 2 26 26 H 1.09001 * 109.47258 * 299.99613 * 10 9 7 27 27 H 1.08996 * 109.47258 * 59.99895 * 10 9 7 28 28 H 1.08999 * 109.47227 * 299.99574 * 11 10 9 29 29 H 1.08996 * 109.47522 * 59.99815 * 11 10 9 30 30 H 1.08996 * 110.37020 * 332.46217 * 13 12 11 31 31 H 1.08999 * 110.37693 * 94.80891 * 13 12 11 32 32 H 1.08995 * 110.99131 * 278.98057 * 14 13 12 33 33 H 1.09003 * 111.02167 * 155.17343 * 14 13 12 34 34 H 1.08996 * 110.70384 * 205.96298 * 15 14 13 35 35 H 1.09003 * 110.85443 * 82.79910 * 15 14 13 36 36 H 1.09001 * 109.47093 * 302.46461 * 18 16 12 37 37 H 1.09010 * 109.47332 * 62.46164 * 18 16 12 38 38 H 1.09006 * 109.46552 * 295.35833 * 19 18 16 39 39 H 1.08999 * 109.46887 * 55.35325 * 19 18 16 40 40 H 0.96693 * 116.99645 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0074 10 6 2.2454 -3.6620 0.0136 11 6 1.4803 -4.9870 0.0199 12 7 2.4349 -6.1035 0.0252 13 6 3.2382 -6.1197 -1.2158 14 6 3.4941 -7.6206 -1.5019 15 6 2.1489 -8.2569 -1.0632 16 6 1.7359 -7.3958 0.1490 17 1 2.0303 -7.8895 1.0751 18 6 0.2224 -7.1721 0.1371 19 6 -0.4927 -8.5113 0.3276 20 6 -1.9779 -8.2776 0.4299 21 8 -2.4192 -7.1552 0.3584 22 8 -2.8106 -9.3166 0.6005 23 1 -0.4850 0.8400 0.0004 24 1 0.6244 -2.5521 0.8977 25 1 0.6244 -2.5616 -0.8822 26 1 2.8720 -3.6090 -0.8767 27 1 2.8720 -3.5995 0.9032 28 1 0.8534 -5.0403 0.9100 29 1 0.8540 -5.0492 -0.8699 30 1 2.6798 -5.6671 -2.0352 31 1 4.1821 -5.5962 -1.0639 32 1 4.3196 -7.9979 -0.8985 33 1 3.6788 -7.7905 -2.5626 34 1 2.2926 -9.2959 -0.7668 35 1 1.4072 -8.1835 -1.8586 36 1 -0.0513 -6.4957 0.9468 37 1 -0.0728 -6.7351 -0.8169 38 1 -0.2845 -9.1586 -0.5244 39 1 -0.1358 -8.9870 1.2410 40 1 -3.7547 -9.1170 0.6610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309586612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = -109.389935 kcal Electronic energy + Delta-G solvation = -19135.433935 eV Core-core repulsion = 16142.212893 eV Total energy + Delta-G solvation = -2993.221043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47853 -39.37743 -36.31846 -34.36918 -33.49606 -32.38547 -30.08766 -28.56302 -26.06566 -24.59024 -23.07142 -21.69646 -20.95620 -20.13685 -18.87733 -18.09293 -16.76599 -16.42941 -16.19190 -15.79633 -15.23933 -14.65641 -14.35798 -14.14614 -13.71284 -13.08943 -12.94530 -12.80302 -12.30064 -12.02481 -11.78132 -11.64631 -11.52907 -11.27361 -11.14714 -10.98230 -10.80830 -10.75347 -10.67626 -10.59335 -10.45359 -10.21761 -9.55683 -9.25217 -8.97829 -8.27765 -7.98711 -5.92743 -3.94883 2.08594 2.87574 3.36331 3.42214 3.46193 4.15410 4.51625 4.60102 4.67876 4.76330 4.79202 4.95446 5.10289 5.36631 5.40626 5.42709 5.44850 5.50694 5.72143 5.76077 5.79547 5.86648 5.93549 6.06671 6.12768 6.21121 6.31592 6.38752 6.45042 6.77538 6.86912 7.17845 7.35429 7.46266 7.74840 7.76596 7.92232 8.08290 8.51412 9.12571 9.68738 11.18676 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.004579 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.528828 B = 6113.341097 C = 7379.720081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.047 3.953 12 N -0.524 5.524 13 C 0.042 3.958 14 C -0.130 4.130 15 C -0.141 4.141 16 C 0.074 3.926 17 H 0.084 0.916 18 C -0.131 4.131 19 C -0.109 4.109 20 C 0.472 3.528 21 O -0.506 6.506 22 O -0.523 6.523 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -21.705 -1.144 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.080 4.080 12 N -0.248 5.248 13 C -0.085 4.085 14 C -0.168 4.168 15 C -0.179 4.179 16 C -0.035 4.035 17 H 0.102 0.898 18 C -0.169 4.169 19 C -0.147 4.147 20 C 0.314 3.686 21 O -0.393 6.393 22 O -0.336 6.336 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.011 -21.265 -0.753 21.303 hybrid contribution -0.880 1.022 -0.676 1.508 sum 0.132 -20.244 -1.429 20.295 Atomic orbital electron populations 1.69978 1.06046 1.26472 1.51073 1.25030 0.94822 0.99200 0.95464 0.86612 0.79882 0.83588 0.78026 1.20744 1.21263 1.19863 1.21260 0.93011 0.91087 1.50229 0.92725 1.19070 0.94023 0.91396 0.97101 1.21648 0.99116 0.92925 1.00630 1.22562 0.94015 0.90943 1.00470 1.63825 1.23365 1.01790 1.35774 1.23054 0.98659 0.95704 0.91102 1.22700 0.97368 0.95738 1.00994 1.22928 0.97575 0.99450 0.97942 1.22455 0.91208 0.91233 0.98557 0.89767 1.22169 0.94825 0.95246 1.04691 1.21381 0.86559 1.01233 1.05565 1.23664 0.90634 0.82230 0.72070 1.90801 1.78514 1.24774 1.45166 1.84528 1.23405 1.40733 1.84889 0.93084 0.96601 0.96885 0.93660 0.92727 0.90759 0.94913 0.93438 0.90202 0.90858 0.91181 0.90997 0.91438 0.89427 0.90626 0.87826 0.87562 0.73279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.28 5.12 -26.73 -0.14 -2.42 16 11 C 0.05 0.85 3.67 -3.82 -0.01 0.84 16 12 N -0.52 -7.89 5.20 -223.35 -1.16 -9.06 16 13 C 0.04 0.58 5.53 -2.29 -0.01 0.57 16 14 C -0.13 -1.34 7.08 -24.59 -0.17 -1.51 16 15 C -0.14 -1.33 5.57 -24.91 -0.14 -1.47 16 16 C 0.07 0.86 3.49 -66.72 -0.23 0.63 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 18 C -0.13 -1.58 2.70 -26.73 -0.07 -1.65 16 19 C -0.11 -0.97 5.56 -27.89 -0.15 -1.13 16 20 C 0.47 5.25 8.33 36.00 0.30 5.55 16 21 O -0.51 -7.89 16.68 -18.75 -0.31 -8.20 16 22 O -0.52 -4.37 13.42 -39.27 -0.53 -4.90 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.96 7.32 -51.93 -0.38 0.58 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.38 6.33 -51.93 -0.33 1.05 16 29 H 0.03 0.61 6.75 -51.93 -0.35 0.26 16 30 H 0.05 0.69 7.71 -51.93 -0.40 0.29 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.64 7.77 -51.93 -0.40 0.23 16 36 H 0.09 1.25 6.12 -51.93 -0.32 0.94 16 37 H 0.08 1.04 6.95 -51.92 -0.36 0.68 16 38 H 0.10 0.72 7.51 -51.93 -0.39 0.33 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 1.90 9.10 45.56 0.41 2.31 16 LS Contribution 320.91 15.07 4.84 4.84 Total: -1.00 -34.29 320.91 -8.50 -42.79 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.86 Total: -1.48 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.19 Total: -14.10 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.43 Total: -36.17 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.84 Total: -13.10 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.29 -8.50 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309586612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.602 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds