Wall clock time and date at job start Mon Mar 30 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48501 * 109.47144 * 269.99911 * 3 2 1 5 5 H 1.48502 * 109.47091 * 30.00430 * 3 2 1 6 6 H 1.48502 * 109.46875 * 149.99945 * 3 2 1 7 7 C 1.37874 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00029 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.42991 * 57.46377 * 9 7 2 11 11 C 1.54367 * 110.57707 * 294.82939 * 9 7 2 12 12 C 1.53876 * 106.54765 * 217.62905 * 11 9 7 13 13 C 1.54263 * 106.63651 * 0.04097 * 12 11 9 14 14 H 1.09010 * 110.48513 * 264.77233 * 13 12 11 15 15 N 1.46897 * 110.48711 * 142.26535 * 13 12 11 16 16 C 1.46904 * 111.00374 * 86.44874 * 15 13 12 17 17 C 1.52580 * 109.22843 * 276.24065 * 16 15 13 18 18 C 1.53094 * 109.95886 * 169.00026 * 17 16 15 19 19 S 1.81744 * 108.83873 * 63.02232 * 18 17 16 20 20 C 1.81746 * 102.22377 * 306.73646 * 19 18 17 21 21 C 1.52576 * 109.22796 * 155.00161 * 16 15 13 22 22 C 1.54884 * 104.19983 * 23.58277 * 13 12 11 23 23 H 0.97003 * 119.99608 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.04920 * 98.36502 * 11 9 7 25 25 H 1.09003 * 110.07124 * 336.90136 * 11 9 7 26 26 H 1.09002 * 110.03428 * 240.72988 * 12 11 9 27 27 H 1.08995 * 110.02995 * 119.34836 * 12 11 9 28 28 H 1.00898 * 110.99832 * 322.49909 * 15 13 12 29 29 H 1.09006 * 109.22012 * 35.60079 * 16 15 13 30 30 H 1.08998 * 109.38974 * 289.15410 * 17 16 15 31 31 H 1.09002 * 109.38996 * 48.85100 * 17 16 15 32 32 H 1.09003 * 109.57492 * 303.21978 * 18 17 16 33 33 H 1.08996 * 109.57967 * 182.83297 * 18 17 16 34 34 H 1.09000 * 109.57608 * 293.45501 * 20 19 18 35 35 H 1.08998 * 109.57727 * 173.07343 * 20 19 18 36 36 H 1.09007 * 109.39004 * 311.14471 * 21 16 15 37 37 H 1.09002 * 109.39279 * 70.84766 * 21 16 15 38 38 H 1.09007 * 110.75453 * 80.37494 * 22 13 12 39 39 H 1.08998 * 110.75788 * 203.74013 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.5846 -2.5537 -0.8614 11 6 0.4546 -2.6658 1.3113 12 6 0.5388 -4.1552 1.6889 13 6 1.3833 -4.8410 0.5952 14 1 0.7381 -5.2760 -0.1683 15 7 2.2478 -5.8722 1.1842 16 6 1.5390 -7.1543 1.2932 17 6 0.7119 -7.1638 2.5753 18 6 -0.2393 -8.3634 2.5747 19 16 0.7439 -9.8919 2.5633 20 6 1.8387 -9.6346 1.1356 21 6 2.5559 -8.2918 1.2983 22 6 2.2364 -3.6941 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 -0.5853 -2.3781 1.1564 25 1 0.8980 -2.0556 2.0982 26 1 -0.4602 -4.5903 1.7171 27 1 1.0222 -4.2676 2.6593 28 1 2.6021 -5.5775 2.0818 29 1 0.8744 -7.2708 0.4371 30 1 1.3781 -7.2306 3.4353 31 1 0.1325 -6.2427 2.6390 32 1 -0.8705 -8.3286 1.6867 33 1 -0.8619 -8.3363 3.4689 34 1 1.2481 -9.6246 0.2196 35 1 2.5739 -10.4380 1.0896 36 1 3.2571 -8.1541 0.4751 37 1 3.1018 -8.2851 2.2417 38 1 3.0984 -3.4843 0.6322 39 1 2.5513 -3.9346 -1.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336213806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:36 Heat of formation + Delta-G solvation = -27.016530 kcal Electronic energy + Delta-G solvation = -17309.319680 eV Core-core repulsion = 14762.423487 eV Total energy + Delta-G solvation = -2546.896193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.80170 -36.46836 -33.05986 -31.65997 -31.42500 -28.10472 -27.15347 -24.86033 -23.57090 -22.96190 -20.89624 -19.41276 -19.05608 -17.10391 -16.32801 -15.73093 -14.84876 -14.75278 -14.36942 -14.29914 -13.80368 -13.40211 -13.12565 -12.93167 -12.66303 -12.44392 -12.28499 -11.72150 -11.51534 -11.22414 -11.08458 -10.92192 -10.82951 -10.50465 -10.39020 -10.13550 -9.94194 -9.70965 -9.55653 -9.11132 -8.73173 -8.36747 -8.07698 -7.83855 -5.99641 -4.01851 1.62468 2.37243 3.31259 3.38062 3.41363 4.20106 4.46092 4.54471 4.71988 4.85428 4.94182 5.06441 5.23903 5.30834 5.39543 5.44546 5.52933 5.56235 5.61854 5.77285 5.82494 5.84690 6.08632 6.10608 6.20409 6.43985 6.63506 6.72169 6.82745 7.01801 7.13299 7.33064 7.47527 7.66523 7.70776 7.91052 8.03911 8.48937 9.01744 9.62233 11.10277 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.056858 B = 0.004040 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.338186 B = 6928.991881 C = 7210.555427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.095 4.095 12 C -0.152 4.152 13 C 0.081 3.919 14 H 0.071 0.929 15 N -0.676 5.676 16 C 0.082 3.918 17 C -0.160 4.160 18 C -0.073 4.073 19 S -0.282 6.282 20 C -0.076 4.076 21 C -0.111 4.111 22 C -0.100 4.100 23 H 0.259 0.741 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.340 0.660 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -16.617 4.085 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.134 4.134 12 C -0.191 4.191 13 C -0.028 4.028 14 H 0.089 0.911 15 N -0.304 5.304 16 C -0.029 4.029 17 C -0.200 4.200 18 C -0.222 4.222 19 S -0.056 6.056 20 C -0.225 4.225 21 C -0.150 4.150 22 C -0.138 4.138 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.126 -17.534 4.168 18.057 hybrid contribution -0.308 2.149 0.043 2.172 sum 0.818 -15.384 4.211 15.971 Atomic orbital electron populations 1.69975 1.05892 1.26361 1.50770 1.24989 0.94820 0.99007 0.95203 0.86659 0.79928 0.83722 0.78078 1.20731 1.21351 1.19924 1.21169 0.92825 0.90511 1.50451 0.92644 1.19468 0.92546 0.91772 0.93409 0.95306 1.22068 1.00842 0.90498 1.00004 1.23030 0.98480 0.99902 0.97730 1.22636 0.93281 0.91275 0.95643 0.91103 1.60765 1.37268 1.02434 1.29949 1.21560 0.93965 0.91009 0.96373 1.22700 0.98925 0.98208 1.00156 1.23387 0.99205 0.93796 1.05780 1.86800 1.46713 1.29065 1.43048 1.23448 1.00023 1.01402 0.97590 1.21710 0.98213 0.91347 1.03746 1.22538 0.98477 0.94125 0.98668 0.93168 0.92966 0.93137 0.93762 0.93315 0.84085 0.90822 0.90679 0.89653 0.89923 0.88038 0.89917 0.87841 0.89753 0.90915 0.92299 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 12.63 55.43 0.70 -24.93 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 8 H 0.06 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.05 1.15 2.72 -90.06 -0.24 0.90 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.10 -2.16 5.61 -25.56 -0.14 -2.31 16 12 C -0.15 -2.67 4.74 -25.61 -0.12 -2.80 16 13 C 0.08 1.36 3.16 -66.06 -0.21 1.16 16 14 H 0.07 1.20 7.51 -51.92 -0.39 0.81 16 15 N -0.68 -9.50 6.11 -98.46 -0.60 -10.10 16 16 C 0.08 0.96 2.21 -68.14 -0.15 0.81 16 17 C -0.16 -1.75 4.97 -26.90 -0.13 -1.89 16 18 C -0.07 -0.74 6.45 37.21 0.24 -0.50 16 19 S -0.28 -3.05 22.33 -107.50 -2.40 -5.45 16 20 C -0.08 -0.71 6.45 37.21 0.24 -0.47 16 21 C -0.11 -1.14 5.34 -26.90 -0.14 -1.28 16 22 C -0.10 -2.03 5.96 -24.74 -0.15 -2.18 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 26 H 0.04 0.73 7.41 -51.93 -0.38 0.34 16 27 H 0.05 0.80 7.37 -51.93 -0.38 0.41 16 28 H 0.34 4.70 7.91 -39.29 -0.31 4.39 16 29 H 0.07 0.92 7.40 -51.93 -0.38 0.54 16 30 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 31 H 0.09 1.02 5.18 -51.93 -0.27 0.75 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.06 1.22 8.05 -51.93 -0.42 0.80 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -27.66 309.19 -10.56 -38.22 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.70 Total: 2.54 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -1.20 Total: -21.20 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.10 Total: -35.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.40 Total: -5.45 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.66 -10.56 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336213806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.207 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds