Wall clock time and date at job start Mon Mar 30 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47108 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47054 * 59.99706 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99598 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.67290 * 59.29779 * 9 7 2 11 11 C 1.54887 * 110.75589 * 296.05989 * 9 7 2 12 12 C 1.54757 * 103.96441 * 203.67003 * 11 9 7 13 13 C 1.53872 * 106.65180 * 23.57130 * 12 11 9 14 14 H 1.08995 * 110.03240 * 240.72419 * 13 12 11 15 15 N 1.46898 * 110.07489 * 119.31523 * 13 12 11 16 16 C 1.46900 * 111.00225 * 87.80718 * 15 13 12 17 17 H 1.08999 * 109.38821 * 324.80553 * 16 15 13 18 18 C 1.52578 * 109.39442 * 204.99967 * 16 15 13 19 19 C 1.52582 * 110.72953 * 169.17383 * 18 16 15 20 20 C 1.53102 * 109.95036 * 70.67607 * 19 18 16 21 21 S 1.81743 * 108.84446 * 296.97450 * 20 19 18 22 22 C 1.53102 * 109.38884 * 84.50332 * 16 15 13 23 23 C 1.54265 * 106.59766 * 0.02562 * 13 12 11 24 24 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.49004 * 322.23904 * 11 9 7 26 26 H 1.09001 * 110.48617 * 84.88414 * 11 9 7 27 27 H 1.08996 * 110.00094 * 264.27075 * 12 11 9 28 28 H 1.09008 * 110.05485 * 142.89417 * 12 11 9 29 29 H 1.00897 * 111.00205 * 211.76198 * 15 13 12 30 30 H 1.08996 * 109.22757 * 289.50204 * 18 16 15 31 31 H 1.09007 * 109.22289 * 48.85248 * 18 16 15 32 32 H 1.09000 * 109.39196 * 190.82692 * 19 18 16 33 33 H 1.08998 * 109.38887 * 310.63344 * 19 18 16 34 34 H 1.08998 * 109.57325 * 56.79030 * 20 19 18 35 35 H 1.09006 * 109.56740 * 177.16894 * 20 19 18 36 36 H 1.09002 * 109.57522 * 302.98532 * 22 16 15 37 37 H 1.09010 * 109.57129 * 63.36925 * 22 16 15 38 38 H 1.09005 * 110.48489 * 217.71127 * 23 13 12 39 39 H 1.08998 * 110.60081 * 95.12457 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6079 -2.5722 -0.8766 11 6 0.4250 -2.6561 1.3013 12 6 0.2372 -4.1857 1.4423 13 6 1.3842 -4.8450 0.6565 14 1 0.9804 -5.4629 -0.1455 15 7 2.2068 -5.6639 1.5568 16 6 1.6722 -7.0280 1.6635 17 1 0.5835 -6.9944 1.6205 18 6 2.1080 -7.6406 2.9912 19 6 1.3592 -8.9433 3.2566 20 6 1.8463 -10.0310 2.2955 21 16 1.4549 -9.5285 0.5934 22 6 2.1989 -7.8728 0.5003 23 6 2.2298 -3.6980 0.0656 24 1 -0.4850 0.8400 0.0004 25 1 0.9763 -2.2589 2.1536 26 1 -0.5392 -2.1572 1.2035 27 1 -0.7231 -4.4838 1.0218 28 1 0.2903 -4.4737 2.4923 29 1 3.1699 -5.6755 1.2563 30 1 3.1787 -7.8421 2.9593 31 1 1.9000 -6.9364 3.7968 32 1 1.5386 -9.2610 4.2837 33 1 0.2912 -8.7834 3.1085 34 1 2.9240 -10.1556 2.4011 35 1 1.3440 -10.9712 2.5235 36 1 1.9270 -7.4028 -0.4448 37 1 3.2836 -7.9553 0.5708 38 1 2.5808 -3.9582 -0.9331 39 1 3.0727 -3.4679 0.7172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378731522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:47 Heat of formation + Delta-G solvation = -27.059741 kcal Electronic energy + Delta-G solvation = -17219.589081 eV Core-core repulsion = 14672.691015 eV Total energy + Delta-G solvation = -2546.898067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.56714 -36.53751 -33.73856 -32.10584 -29.47742 -28.06138 -27.40861 -25.99351 -23.68249 -22.46835 -20.73151 -19.18671 -18.91151 -16.99015 -16.34075 -15.61268 -15.13871 -14.83952 -14.56132 -14.24313 -13.81219 -13.63902 -13.31083 -13.06859 -12.58965 -12.22192 -11.73129 -11.53067 -11.47753 -11.14568 -10.98667 -10.91134 -10.72004 -10.61376 -10.42791 -10.04052 -9.93480 -9.87083 -9.44962 -9.09631 -8.73159 -8.33134 -8.25840 -7.72211 -5.96835 -3.99271 1.61257 2.36666 3.31853 3.39951 3.43679 4.27846 4.47739 4.50368 4.65809 4.78342 4.84062 5.03591 5.26770 5.33138 5.36298 5.47815 5.51056 5.58311 5.66701 5.76900 5.82223 5.95927 6.08654 6.11432 6.37716 6.50822 6.65953 6.78752 6.89418 7.01923 7.17595 7.37782 7.54988 7.65006 7.79090 7.95779 8.08109 8.49717 9.03174 9.64519 11.12738 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.051572 B = 0.004039 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.797172 B = 6930.914892 C = 6995.960707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.029 0.971 11 C -0.097 4.097 12 C -0.117 4.117 13 C 0.082 3.918 14 H 0.035 0.965 15 N -0.671 5.671 16 C 0.088 3.912 17 H 0.089 0.911 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.081 4.081 21 S -0.270 6.270 22 C -0.109 4.109 23 C -0.119 4.119 24 H 0.258 0.742 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.337 0.663 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -17.626 5.003 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.047 0.953 11 C -0.136 4.136 12 C -0.155 4.155 13 C -0.027 4.027 14 H 0.053 0.947 15 N -0.302 5.302 16 C -0.024 4.024 17 H 0.107 0.893 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.229 4.229 21 S -0.044 6.044 22 C -0.259 4.259 23 C -0.157 4.157 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.146 -17.843 4.770 18.594 hybrid contribution 1.379 1.162 -0.050 1.804 sum 3.525 -16.681 4.720 17.691 Atomic orbital electron populations 1.69969 1.05869 1.26229 1.50799 1.24971 0.94815 0.98965 0.95185 0.86603 0.80181 0.84105 0.77501 1.19846 1.21142 1.21086 1.21168 0.92775 0.90569 1.50455 0.92719 1.19528 0.92201 0.91109 0.93904 0.95330 1.22334 1.01143 0.90501 0.99582 1.22370 0.95450 0.98696 0.98993 1.22324 0.94682 0.93627 0.92020 0.94733 1.60881 1.05986 1.09109 1.54190 1.21839 1.00441 0.87841 0.92242 0.89326 1.21513 0.99797 0.96179 0.98080 1.21743 1.01387 0.94078 0.98797 1.23468 1.04133 1.01739 0.93597 1.86880 1.77020 1.21649 1.18902 1.24382 1.02768 0.94491 1.04244 1.22666 0.99202 0.95831 0.98018 0.93203 0.93456 0.91750 0.93778 0.92472 0.84454 0.92178 0.89895 0.90772 0.90547 0.90043 0.88016 0.87924 0.89941 0.93912 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 12.20 55.43 0.68 -25.07 16 2 C 0.06 1.73 5.35 -17.82 -0.10 1.63 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.08 8.52 -34.44 -0.29 -14.37 16 8 H 0.05 1.49 7.78 -52.49 -0.41 1.08 16 9 C 0.05 1.28 2.76 -89.77 -0.25 1.03 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.10 -2.29 5.70 -24.81 -0.14 -2.43 16 12 C -0.12 -2.24 6.47 -25.35 -0.16 -2.40 16 13 C 0.08 1.43 3.01 -66.60 -0.20 1.23 16 14 H 0.03 0.59 7.12 -51.93 -0.37 0.22 16 15 N -0.67 -9.71 5.90 -98.75 -0.58 -10.29 16 16 C 0.09 1.08 2.16 -67.88 -0.15 0.93 16 17 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 18 C -0.12 -1.22 5.21 -27.16 -0.14 -1.36 16 19 C -0.12 -1.06 5.75 -26.89 -0.15 -1.21 16 20 C -0.08 -0.71 6.45 37.21 0.24 -0.47 16 21 S -0.27 -3.10 22.33 -107.50 -2.40 -5.50 16 22 C -0.11 -1.25 5.69 37.21 0.21 -1.04 16 23 C -0.12 -2.41 5.66 -25.06 -0.14 -2.55 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.16 8.04 -51.93 -0.42 0.75 16 26 H 0.06 1.65 7.48 -51.93 -0.39 1.26 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.05 7.92 -51.92 -0.41 0.64 16 29 H 0.34 4.57 8.07 -39.29 -0.32 4.25 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.10 1.27 7.40 -51.93 -0.38 0.89 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.31 7.86 -51.93 -0.41 0.91 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -28.12 312.96 -10.75 -38.86 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.86 Total: 1.90 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.28 Total: -21.01 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.09 Total: -35.36 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.40 Total: -5.50 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.12 -10.75 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378731522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.803 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds