Wall clock time and date at job start Mon Mar 30 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47108 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47054 * 59.99706 * 3 2 1 7 7 C 1.37878 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99598 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.67290 * 59.29779 * 9 7 2 11 11 C 1.54887 * 110.75589 * 296.05989 * 9 7 2 12 12 C 1.54757 * 103.96441 * 203.67003 * 11 9 7 13 13 C 1.53872 * 106.65180 * 23.57130 * 12 11 9 14 14 H 1.08995 * 110.03240 * 240.72419 * 13 12 11 15 15 N 1.46898 * 110.07489 * 119.31523 * 13 12 11 16 16 C 1.46900 * 111.00225 * 87.80718 * 15 13 12 17 17 H 1.08999 * 109.38821 * 324.80553 * 16 15 13 18 18 C 1.52578 * 109.39442 * 204.99967 * 16 15 13 19 19 C 1.52582 * 110.72953 * 169.17383 * 18 16 15 20 20 C 1.53102 * 109.95036 * 70.67607 * 19 18 16 21 21 S 1.81743 * 108.84446 * 296.97450 * 20 19 18 22 22 C 1.53102 * 109.38884 * 84.50332 * 16 15 13 23 23 C 1.54265 * 106.59766 * 0.02562 * 13 12 11 24 24 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08998 * 110.49004 * 322.23904 * 11 9 7 26 26 H 1.09001 * 110.48617 * 84.88414 * 11 9 7 27 27 H 1.08996 * 110.00094 * 264.27075 * 12 11 9 28 28 H 1.09008 * 110.05485 * 142.89417 * 12 11 9 29 29 H 1.00897 * 111.00205 * 211.76198 * 15 13 12 30 30 H 1.08996 * 109.22757 * 289.50204 * 18 16 15 31 31 H 1.09007 * 109.22289 * 48.85248 * 18 16 15 32 32 H 1.09000 * 109.39196 * 190.82692 * 19 18 16 33 33 H 1.08998 * 109.38887 * 310.63344 * 19 18 16 34 34 H 1.08998 * 109.57325 * 56.79030 * 20 19 18 35 35 H 1.09006 * 109.56740 * 177.16894 * 20 19 18 36 36 H 1.09002 * 109.57522 * 302.98532 * 22 16 15 37 37 H 1.09010 * 109.57129 * 63.36925 * 22 16 15 38 38 H 1.09005 * 110.48489 * 217.71127 * 23 13 12 39 39 H 1.08998 * 110.60081 * 95.12457 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6079 -2.5722 -0.8766 11 6 0.4250 -2.6561 1.3013 12 6 0.2372 -4.1857 1.4423 13 6 1.3842 -4.8450 0.6565 14 1 0.9804 -5.4629 -0.1455 15 7 2.2068 -5.6639 1.5568 16 6 1.6722 -7.0280 1.6635 17 1 0.5835 -6.9944 1.6205 18 6 2.1080 -7.6406 2.9912 19 6 1.3592 -8.9433 3.2566 20 6 1.8463 -10.0310 2.2955 21 16 1.4549 -9.5285 0.5934 22 6 2.1989 -7.8728 0.5003 23 6 2.2298 -3.6980 0.0656 24 1 -0.4850 0.8400 0.0004 25 1 0.9763 -2.2589 2.1536 26 1 -0.5392 -2.1572 1.2035 27 1 -0.7231 -4.4838 1.0218 28 1 0.2903 -4.4737 2.4923 29 1 3.1699 -5.6755 1.2563 30 1 3.1787 -7.8421 2.9593 31 1 1.9000 -6.9364 3.7968 32 1 1.5386 -9.2610 4.2837 33 1 0.2912 -8.7834 3.1085 34 1 2.9240 -10.1556 2.4011 35 1 1.3440 -10.9712 2.5235 36 1 1.9270 -7.4028 -0.4448 37 1 3.2836 -7.9553 0.5708 38 1 2.5808 -3.9582 -0.9331 39 1 3.0727 -3.4679 0.7172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378731522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:46 Heat of formation + Delta-G solvation = -42.486895 kcal Electronic energy + Delta-G solvation = -17220.258053 eV Core-core repulsion = 14672.691015 eV Total energy + Delta-G solvation = -2547.567038 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86173 -37.85129 -35.12548 -33.81733 -30.74564 -29.83851 -28.28629 -27.54105 -25.55240 -23.36771 -21.80129 -20.84236 -20.51526 -18.45409 -17.79189 -16.78184 -16.59098 -16.43914 -15.84149 -15.34123 -15.06494 -14.66964 -14.31331 -14.11058 -14.06193 -13.89636 -13.45890 -12.98229 -12.77457 -12.39296 -12.34646 -12.33017 -12.15478 -12.04084 -11.81371 -11.63323 -11.40237 -11.32913 -10.93066 -10.82850 -10.77421 -10.44698 -9.41095 -8.65007 -8.10371 -6.20040 0.78962 1.40393 1.42150 1.53498 1.56587 2.44405 3.19426 3.20534 3.62962 3.85696 3.92703 4.00101 4.07892 4.10833 4.24880 4.32214 4.44553 4.57716 4.69753 4.73450 4.80959 4.82733 4.92004 4.98987 5.06187 5.16520 5.18884 5.24111 5.28808 5.32926 5.42658 5.50306 5.67611 5.91483 6.02040 6.21568 6.40324 6.51523 6.90888 7.47371 8.98674 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.051572 B = 0.004039 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.797172 B = 6930.914892 C = 6995.960707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.039 3.961 10 H -0.003 1.003 11 C -0.089 4.089 12 C -0.106 4.106 13 C 0.098 3.902 14 H 0.042 0.958 15 N -0.671 5.671 16 C 0.092 3.908 17 H 0.073 0.927 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.069 4.069 21 S -0.308 6.308 22 C -0.099 4.099 23 C -0.108 4.108 24 H 0.259 0.741 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.345 0.655 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -19.068 5.954 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.128 4.128 12 C -0.145 4.145 13 C -0.012 4.012 14 H 0.060 0.940 15 N -0.303 5.303 16 C -0.019 4.019 17 H 0.092 0.908 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.217 4.217 21 S -0.083 6.083 22 C -0.249 4.249 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.485 -19.305 5.722 20.434 hybrid contribution 0.949 1.581 -0.337 1.874 sum 4.434 -17.724 5.385 19.047 Atomic orbital electron populations 1.70100 1.07288 1.27029 1.51633 1.25770 0.95644 1.02454 0.94920 0.85582 0.79190 0.79840 0.77512 1.18988 1.20727 1.20722 1.21552 0.92961 0.92064 1.50226 0.92850 1.19529 0.92970 0.92371 0.93098 0.98443 1.22117 0.98936 0.93483 0.98239 1.22252 0.96689 0.95390 1.00127 1.22000 0.93816 0.93163 0.92220 0.94016 1.60796 1.06119 1.10301 1.53057 1.21840 0.99512 0.86764 0.93826 0.90829 1.21468 1.00582 0.96698 0.96351 1.21708 1.00585 0.93173 1.00043 1.23553 1.05107 1.02181 0.90885 1.87051 1.77459 1.21706 1.22085 1.24237 1.03304 0.94183 1.03204 1.22484 0.98322 0.94881 0.98900 0.93195 0.95149 0.94776 0.93208 0.91377 0.83498 0.91205 0.90664 0.88491 0.91375 0.88792 0.86437 0.89102 0.88781 0.92981 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 12.20 21.45 0.26 -54.37 16 2 C 0.01 0.60 5.35 84.66 0.45 1.05 16 3 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.53 -29.65 8.52 25.60 0.22 -29.43 16 8 H 0.05 2.92 7.78 -2.91 -0.02 2.90 16 9 C 0.04 1.99 2.76 -10.24 -0.03 1.96 16 10 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 11 C -0.09 -4.31 5.70 31.84 0.18 -4.13 16 12 C -0.11 -4.04 6.47 31.49 0.20 -3.83 16 13 C 0.10 3.29 3.01 45.64 0.14 3.43 16 14 H 0.04 1.37 7.12 -2.39 -0.02 1.35 16 15 N -0.67 -18.18 5.90 -466.33 -2.75 -20.93 16 16 C 0.09 2.07 2.16 44.81 0.10 2.17 16 17 H 0.07 1.91 7.68 -2.39 -0.02 1.89 16 18 C -0.11 -2.04 5.21 30.32 0.16 -1.88 16 19 C -0.12 -1.67 5.75 30.49 0.18 -1.50 16 20 C -0.07 -0.99 6.45 72.02 0.46 -0.53 16 21 S -0.31 -6.53 22.33 -56.49 -1.26 -7.79 16 22 C -0.10 -2.10 5.69 72.02 0.41 -1.69 16 23 C -0.11 -4.31 5.66 31.67 0.18 -4.13 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.03 1.52 8.04 -2.39 -0.02 1.50 16 26 H 0.03 1.81 7.48 -2.39 -0.02 1.79 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.43 7.92 -2.38 -0.02 2.41 16 29 H 0.35 8.57 8.07 -89.70 -0.72 7.85 16 30 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.09 2.14 7.40 -2.39 -0.02 2.12 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 Total: -1.00 -61.26 312.96 1.20 -60.06 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.28 Total: 15.27 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 2.65 Total: -38.51 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.49 Total: -75.30 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -6.53 SS G_CDS: -1.26 Total: -7.79 kcal Total: -61.26 1.20 -60.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378731522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.571 kcal (2) G-P(sol) polarization free energy of solvation -61.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds