Wall clock time and date at job start Mon Mar 30 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48497 * 109.47004 * 269.99790 * 3 2 1 5 5 H 1.48502 * 109.46877 * 29.99574 * 3 2 1 6 6 H 1.48496 * 109.47036 * 149.99861 * 3 2 1 7 7 C 1.37876 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00224 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.43382 * 57.45945 * 9 7 2 11 11 C 1.54884 * 110.59977 * 294.84005 * 9 7 2 12 12 C 1.54894 * 102.75261 * 203.32428 * 11 9 7 13 13 C 1.54267 * 104.19091 * 37.94115 * 12 11 9 14 14 H 1.09005 * 110.06769 * 95.70091 * 13 12 11 15 15 N 1.46896 * 110.03069 * 217.10387 * 13 12 11 16 16 C 1.46902 * 111.00375 * 272.17221 * 15 13 12 17 17 H 1.09002 * 109.38970 * 34.99907 * 16 15 13 18 18 C 1.52581 * 109.31144 * 154.75185 * 16 15 13 19 19 C 1.52580 * 110.72584 * 190.77105 * 18 16 15 20 20 C 1.53092 * 109.95725 * 289.32584 * 19 18 16 21 21 S 1.81747 * 108.84239 * 63.02821 * 20 19 18 22 22 C 1.53094 * 109.38915 * 275.19786 * 16 15 13 23 23 C 1.53869 * 106.60180 * 336.39523 * 13 12 11 24 24 H 0.97008 * 120.00338 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.75873 * 321.64131 * 11 9 7 26 26 H 1.09005 * 110.75627 * 84.82273 * 11 9 7 27 27 H 1.09002 * 110.48030 * 279.26759 * 12 11 9 28 28 H 1.08999 * 110.48633 * 156.62144 * 12 11 9 29 29 H 1.00904 * 110.99835 * 148.21715 * 15 13 12 30 30 H 1.08999 * 109.22886 * 311.09506 * 18 16 15 31 31 H 1.09005 * 109.22537 * 70.45512 * 18 16 15 32 32 H 1.09007 * 109.38845 * 169.17513 * 19 18 16 33 33 H 1.08997 * 109.38698 * 49.47647 * 19 18 16 34 34 H 1.08999 * 109.58139 * 303.21478 * 20 19 18 35 35 H 1.09005 * 109.57553 * 182.82876 * 20 19 18 36 36 H 1.08996 * 109.58043 * 296.73321 * 22 16 15 37 37 H 1.09002 * 109.57557 * 56.98579 * 22 16 15 38 38 H 1.08998 * 110.03277 * 119.28644 * 23 13 12 39 39 H 1.09006 * 110.03185 * 240.66465 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8917 -0.6445 0.8622 11 6 4.0569 -0.5853 -1.3145 12 6 5.4758 -1.1987 -1.4126 13 6 5.3003 -2.6421 -0.8972 14 1 5.1554 -3.3236 -1.7355 15 7 6.4792 -3.0455 -0.1192 16 6 7.5123 -3.6225 -0.9897 17 1 7.5043 -3.1082 -1.9508 18 6 8.8791 -3.4494 -0.3340 19 6 9.9961 -3.7920 -1.3153 20 6 10.0203 -5.3008 -1.5735 21 16 8.4544 -5.7873 -2.3574 22 6 7.2214 -5.1098 -1.2067 23 6 4.0513 -2.6392 0.0016 24 1 -0.4851 0.8401 -0.0004 25 1 3.4451 -0.8894 -2.1637 26 1 4.1067 0.5014 -1.2458 27 1 6.1732 -0.6498 -0.7797 28 1 5.8193 -1.2021 -2.4470 29 1 6.2249 -3.6886 0.6155 30 1 8.9924 -2.4156 -0.0078 31 1 8.9477 -4.1079 0.5320 32 1 10.9534 -3.4810 -0.8968 33 1 9.8259 -3.2667 -2.2550 34 1 10.1359 -5.8314 -0.6284 35 1 10.8513 -5.5448 -2.2355 36 1 7.2824 -5.6366 -0.2545 37 1 6.2227 -5.2291 -1.6267 38 1 3.3001 -3.3186 -0.4010 39 1 4.3198 -2.9379 1.0149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378731524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:50 Heat of formation + Delta-G solvation = -21.132345 kcal Electronic energy + Delta-G solvation = -17297.283423 eV Core-core repulsion = 14750.642388 eV Total energy + Delta-G solvation = -2546.641035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74006 -36.77126 -33.83438 -32.18281 -29.81637 -28.40077 -27.49076 -26.40688 -23.43580 -22.54169 -20.74870 -19.63091 -18.99658 -17.13713 -16.75533 -15.70419 -15.31330 -14.80265 -14.74247 -14.15866 -13.82153 -13.56211 -13.47473 -13.12995 -12.95223 -12.57900 -12.23935 -11.60514 -11.56137 -11.35071 -11.11486 -10.94127 -10.84242 -10.61166 -10.39516 -10.17459 -10.03070 -9.79578 -9.65030 -9.38027 -8.95654 -8.51347 -8.35353 -7.78640 -6.03948 -4.02324 1.55988 2.31565 3.32121 3.40942 3.44207 4.18306 4.43733 4.46134 4.59509 4.71978 4.76778 4.97602 5.20712 5.20893 5.27310 5.37183 5.41245 5.46364 5.51694 5.66041 5.71228 5.79838 6.00167 6.00630 6.15709 6.29661 6.35168 6.48133 6.64554 6.69416 6.88133 6.93007 7.16605 7.33410 7.50253 7.64132 7.83048 8.56386 8.99645 9.59654 11.09452 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.004458 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.738169 B = 6279.984944 C = 6564.317058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.510 4.510 8 H 0.072 0.928 9 C 0.016 3.984 10 H 0.033 0.967 11 C -0.128 4.128 12 C -0.111 4.111 13 C 0.081 3.919 14 H 0.040 0.960 15 N -0.673 5.673 16 C 0.088 3.912 17 H 0.089 0.911 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.082 4.082 21 S -0.268 6.268 22 C -0.110 4.110 23 C -0.107 4.107 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.339 0.661 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.924 -8.460 -2.233 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.090 0.910 9 C -0.003 4.003 10 H 0.051 0.949 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.028 4.028 14 H 0.058 0.942 15 N -0.304 5.304 16 C -0.024 4.024 17 H 0.107 0.893 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.230 4.230 21 S -0.043 6.043 22 C -0.260 4.260 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.858 -8.305 -3.171 21.757 hybrid contribution 0.093 0.612 0.831 1.037 sum 19.951 -7.693 -2.340 21.510 Atomic orbital electron populations 1.69911 1.06330 1.26857 1.51217 1.25000 0.94625 0.99057 0.94462 0.86885 0.80143 0.83649 0.78339 1.20430 1.22225 1.18847 1.21112 0.88887 0.94300 1.50508 0.91036 1.19881 0.96136 0.91287 0.92974 0.94933 1.22887 0.94021 0.98418 1.01339 1.22412 0.98577 0.95108 0.98870 1.22319 0.89144 0.96372 0.94928 0.94152 1.60882 1.11646 1.44723 1.13160 1.21846 0.92690 0.90168 0.97663 0.89302 1.21513 0.92765 1.03384 0.97905 1.21738 0.99470 0.93878 1.00919 1.23469 0.96724 0.99329 1.03463 1.86909 1.02898 1.75826 1.38619 1.24368 1.00482 1.00144 1.00976 1.22300 0.94363 1.00400 0.97446 0.92769 0.91689 0.93632 0.91396 0.93517 0.84189 0.89936 0.92113 0.90766 0.90571 0.90000 0.87983 0.89874 0.87844 0.91994 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 21.98 24.65 -169.99 -4.19 17.79 16 4 H -0.28 -6.78 7.10 56.52 0.40 -6.38 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.34 6.47 56.52 0.37 -5.97 16 7 C -0.51 -14.27 9.05 -34.44 -0.31 -14.58 16 8 H 0.07 2.16 7.79 -52.49 -0.41 1.75 16 9 C 0.02 0.38 2.27 -90.12 -0.20 0.17 16 10 H 0.03 0.79 7.06 -51.93 -0.37 0.42 16 11 C -0.13 -2.73 5.31 -24.74 -0.13 -2.87 16 12 C -0.11 -1.94 6.40 -25.07 -0.16 -2.10 16 13 C 0.08 1.31 3.01 -66.60 -0.20 1.11 16 14 H 0.04 0.64 7.14 -51.93 -0.37 0.27 16 15 N -0.67 -8.98 6.00 -98.75 -0.59 -9.57 16 16 C 0.09 1.00 2.16 -67.88 -0.15 0.85 16 17 H 0.09 1.13 7.68 -51.93 -0.40 0.73 16 18 C -0.12 -1.13 5.21 -27.16 -0.14 -1.27 16 19 C -0.12 -0.98 5.75 -26.90 -0.15 -1.13 16 20 C -0.08 -0.67 6.45 37.21 0.24 -0.43 16 21 S -0.27 -2.93 22.33 -107.50 -2.40 -5.33 16 22 C -0.11 -1.18 5.69 37.21 0.21 -0.97 16 23 C -0.11 -2.05 6.04 -25.61 -0.15 -2.20 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.06 1.43 8.05 -51.93 -0.42 1.01 16 26 H 0.05 0.99 5.27 -51.93 -0.27 0.72 16 27 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 4.23 7.76 -39.29 -0.30 3.93 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.21 7.42 -51.93 -0.39 0.83 16 38 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 39 H 0.05 0.96 7.47 -51.93 -0.39 0.58 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -29.48 305.07 -9.74 -39.22 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.68 Total: 1.87 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.25 Total: -21.50 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.18 Total: -36.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.19 Total: 17.79 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.40 Total: -5.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.48 -9.74 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378731524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.085 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds