Wall clock time and date at job start Mon Mar 30 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00068 * 2 1 4 4 H 1.48497 * 109.47004 * 269.99790 * 3 2 1 5 5 H 1.48502 * 109.46877 * 29.99574 * 3 2 1 6 6 H 1.48496 * 109.47036 * 149.99861 * 3 2 1 7 7 C 1.37876 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00224 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.43382 * 57.45945 * 9 7 2 11 11 C 1.54884 * 110.59977 * 294.84005 * 9 7 2 12 12 C 1.54894 * 102.75261 * 203.32428 * 11 9 7 13 13 C 1.54267 * 104.19091 * 37.94115 * 12 11 9 14 14 H 1.09005 * 110.06769 * 95.70091 * 13 12 11 15 15 N 1.46896 * 110.03069 * 217.10387 * 13 12 11 16 16 C 1.46902 * 111.00375 * 272.17221 * 15 13 12 17 17 H 1.09002 * 109.38970 * 34.99907 * 16 15 13 18 18 C 1.52581 * 109.31144 * 154.75185 * 16 15 13 19 19 C 1.52580 * 110.72584 * 190.77105 * 18 16 15 20 20 C 1.53092 * 109.95725 * 289.32584 * 19 18 16 21 21 S 1.81747 * 108.84239 * 63.02821 * 20 19 18 22 22 C 1.53094 * 109.38915 * 275.19786 * 16 15 13 23 23 C 1.53869 * 106.60180 * 336.39523 * 13 12 11 24 24 H 0.97008 * 120.00338 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.75873 * 321.64131 * 11 9 7 26 26 H 1.09005 * 110.75627 * 84.82273 * 11 9 7 27 27 H 1.09002 * 110.48030 * 279.26759 * 12 11 9 28 28 H 1.08999 * 110.48633 * 156.62144 * 12 11 9 29 29 H 1.00904 * 110.99835 * 148.21715 * 15 13 12 30 30 H 1.08999 * 109.22886 * 311.09506 * 18 16 15 31 31 H 1.09005 * 109.22537 * 70.45512 * 18 16 15 32 32 H 1.09007 * 109.38845 * 169.17513 * 19 18 16 33 33 H 1.08997 * 109.38698 * 49.47647 * 19 18 16 34 34 H 1.08999 * 109.58139 * 303.21478 * 20 19 18 35 35 H 1.09005 * 109.57553 * 182.82876 * 20 19 18 36 36 H 1.08996 * 109.58043 * 296.73321 * 22 16 15 37 37 H 1.09002 * 109.57557 * 56.98579 * 22 16 15 38 38 H 1.08998 * 110.03277 * 119.28644 * 23 13 12 39 39 H 1.09006 * 110.03185 * 240.66465 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8917 -0.6445 0.8622 11 6 4.0569 -0.5853 -1.3145 12 6 5.4758 -1.1987 -1.4126 13 6 5.3003 -2.6421 -0.8972 14 1 5.1554 -3.3236 -1.7355 15 7 6.4792 -3.0455 -0.1192 16 6 7.5123 -3.6225 -0.9897 17 1 7.5043 -3.1082 -1.9508 18 6 8.8791 -3.4494 -0.3340 19 6 9.9961 -3.7920 -1.3153 20 6 10.0203 -5.3008 -1.5735 21 16 8.4544 -5.7873 -2.3574 22 6 7.2214 -5.1098 -1.2067 23 6 4.0513 -2.6392 0.0016 24 1 -0.4851 0.8401 -0.0004 25 1 3.4451 -0.8894 -2.1637 26 1 4.1067 0.5014 -1.2458 27 1 6.1732 -0.6498 -0.7797 28 1 5.8193 -1.2021 -2.4470 29 1 6.2249 -3.6886 0.6155 30 1 8.9924 -2.4156 -0.0078 31 1 8.9477 -4.1079 0.5320 32 1 10.9534 -3.4810 -0.8968 33 1 9.8259 -3.2667 -2.2550 34 1 10.1359 -5.8314 -0.6284 35 1 10.8513 -5.5448 -2.2355 36 1 7.2824 -5.6366 -0.2545 37 1 6.2227 -5.2291 -1.6267 38 1 3.3001 -3.3186 -0.4010 39 1 4.3198 -2.9379 1.0149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378731524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:50 Heat of formation + Delta-G solvation = -39.371881 kcal Electronic energy + Delta-G solvation = -17298.074349 eV Core-core repulsion = 14750.642388 eV Total energy + Delta-G solvation = -2547.431961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.96718 -37.96370 -35.12168 -34.01203 -31.04715 -30.03624 -28.35113 -27.76197 -25.25367 -23.37587 -21.68580 -21.16992 -20.52064 -18.99244 -17.84121 -16.84237 -16.53328 -16.42497 -15.62712 -15.37664 -15.09982 -14.78654 -14.64922 -14.35168 -14.08665 -14.04259 -13.76843 -13.07450 -12.71283 -12.44310 -12.32790 -12.26510 -12.18140 -11.90425 -11.81235 -11.51490 -11.45024 -11.43352 -11.15241 -11.01127 -10.81566 -10.67639 -9.42458 -8.65558 -8.28370 -6.31035 0.78674 1.33450 1.36690 1.47820 1.56616 2.35541 3.07219 3.17673 3.62554 3.82345 3.88944 3.93022 3.98739 4.07749 4.24420 4.28735 4.42698 4.57106 4.59487 4.70069 4.75771 4.77268 4.82168 4.90184 5.00599 5.01879 5.06556 5.16942 5.21369 5.26539 5.30979 5.43250 5.48171 5.66824 5.78712 6.16210 6.33597 6.48583 6.75980 7.34606 8.88721 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.004458 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.738169 B = 6279.984944 C = 6564.317058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.011 3.989 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.245 1.245 7 C -0.515 4.515 8 H 0.031 0.969 9 C 0.010 3.990 10 H 0.028 0.972 11 C -0.129 4.129 12 C -0.101 4.101 13 C 0.095 3.905 14 H 0.045 0.955 15 N -0.671 5.671 16 C 0.092 3.908 17 H 0.078 0.922 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.070 4.070 21 S -0.309 6.309 22 C -0.101 4.101 23 C -0.102 4.102 24 H 0.264 0.736 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.346 0.654 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.327 -8.176 -2.162 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.553 4.553 8 H 0.049 0.951 9 C -0.009 4.009 10 H 0.046 0.954 11 C -0.167 4.167 12 C -0.139 4.139 13 C -0.015 4.015 14 H 0.063 0.937 15 N -0.303 5.303 16 C -0.019 4.019 17 H 0.096 0.904 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.218 4.218 21 S -0.084 6.084 22 C -0.251 4.251 23 C -0.140 4.140 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.290 -8.044 -3.101 24.834 hybrid contribution -0.999 0.417 0.824 1.360 sum 22.291 -7.627 -2.276 23.669 Atomic orbital electron populations 1.70062 1.08270 1.27919 1.53253 1.25875 0.95352 1.03043 0.94292 0.85868 0.79357 0.78766 0.79076 1.19161 1.22254 1.16912 1.21457 0.91678 0.92722 1.49418 0.95104 1.19866 0.92915 0.94216 0.93934 0.95417 1.22772 0.96339 0.98296 0.99305 1.22331 0.95896 0.95222 1.00446 1.22035 0.88783 0.96135 0.94500 0.93725 1.60837 1.10648 1.45556 1.13242 1.21850 0.93003 0.90102 0.96948 0.90416 1.21467 0.91932 1.03318 0.98355 1.21705 0.99861 0.93622 1.00311 1.23553 0.94873 0.99432 1.03926 1.87085 1.05243 1.76272 1.39767 1.24242 0.99792 0.99860 1.01159 1.22184 0.95450 0.97404 0.99007 0.92678 0.93117 0.93911 0.90712 0.91484 0.83430 0.90388 0.91378 0.88563 0.91226 0.88916 0.86524 0.88947 0.89126 0.93661 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.94 45.33 24.65 68.60 1.69 47.02 16 4 H -0.27 -12.21 7.10 99.48 0.71 -11.50 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.25 -10.97 6.47 99.48 0.64 -10.32 16 7 C -0.51 -29.64 9.05 25.60 0.23 -29.41 16 8 H 0.03 1.96 7.79 -2.91 -0.02 1.94 16 9 C 0.01 0.45 2.27 -10.47 -0.02 0.42 16 10 H 0.03 1.31 7.06 -2.39 -0.02 1.29 16 11 C -0.13 -5.31 5.31 31.89 0.17 -5.14 16 12 C -0.10 -3.24 6.40 31.67 0.20 -3.04 16 13 C 0.10 2.88 3.01 45.64 0.14 3.01 16 14 H 0.04 1.33 7.14 -2.38 -0.02 1.32 16 15 N -0.67 -16.18 6.00 -466.32 -2.80 -18.98 16 16 C 0.09 1.86 2.16 44.81 0.10 1.95 16 17 H 0.08 1.78 7.68 -2.39 -0.02 1.76 16 18 C -0.11 -1.80 5.21 30.32 0.16 -1.64 16 19 C -0.12 -1.48 5.75 30.49 0.18 -1.30 16 20 C -0.07 -0.92 6.45 72.01 0.46 -0.46 16 21 S -0.31 -6.21 22.33 -56.49 -1.26 -7.47 16 22 C -0.10 -1.98 5.69 72.01 0.41 -1.57 16 23 C -0.10 -3.86 6.04 31.32 0.19 -3.67 16 24 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 25 H 0.05 2.20 8.05 -2.39 -0.02 2.18 16 26 H 0.04 1.77 5.27 -2.38 -0.01 1.75 16 27 H 0.07 2.34 8.05 -2.39 -0.02 2.32 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.35 7.74 7.76 -89.69 -0.70 7.05 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.01 8.08 -2.38 -0.02 0.99 16 32 H 0.10 0.87 8.14 -2.38 -0.02 0.86 16 33 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 2.02 7.42 -2.39 -0.02 2.00 16 38 H 0.04 1.83 7.66 -2.39 -0.02 1.81 16 39 H 0.07 2.30 7.47 -2.38 -0.02 2.28 16 Total: -1.00 -64.96 305.07 0.86 -64.10 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.26 Total: 15.39 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 2.67 Total: -39.74 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.50 Total: -79.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.69 Total: 47.02 kcal Atomic # 16 Polarization: -6.21 SS G_CDS: -1.26 Total: -7.47 kcal Total: -64.96 0.86 -64.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378731524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.732 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds