Wall clock time and date at job start Mon Mar 30 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47284 * 2 1 4 4 C 1.50704 * 109.47320 * 119.99422 * 2 1 3 5 5 O 1.20823 * 120.00174 * 100.00178 * 4 2 1 6 6 O 1.34235 * 119.99766 * 280.00303 * 4 2 1 7 7 N 1.46500 * 109.47634 * 239.99625 * 2 1 3 8 8 C 1.36932 * 119.99997 * 111.81077 * 7 2 1 9 9 H 1.07997 * 120.00050 * 236.49727 * 8 7 2 10 10 C 1.38817 * 119.99932 * 56.50410 * 8 7 2 11 11 N 1.31621 * 120.00049 * 207.55012 * 10 8 7 12 12 Si 1.86798 * 120.00179 * 27.54839 * 10 8 7 13 13 H 1.48500 * 109.47290 * 83.60291 * 12 10 8 14 14 H 1.48493 * 109.47311 * 203.60544 * 12 10 8 15 15 H 1.48504 * 109.47200 * 323.60582 * 12 10 8 16 16 C 1.46505 * 119.99658 * 291.53777 * 7 2 1 17 17 C 1.54237 * 108.89571 * 242.87999 * 16 7 2 18 18 C 1.50474 * 108.52750 * 159.26823 * 17 16 7 19 19 C 1.54065 * 112.50107 * 94.14737 * 18 17 16 20 20 C 1.54067 * 112.81627 * 318.28821 * 19 18 17 21 21 C 1.50471 * 112.49883 * 318.28319 * 20 19 18 22 22 C 1.45540 * 108.89007 * 119.99898 * 16 7 2 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47521 * 300.00340 * 1 2 3 25 25 H 1.08997 * 109.47364 * 60.01050 * 1 2 3 26 26 H 0.96702 * 116.99404 * 179.97438 * 6 4 2 27 27 H 0.96991 * 120.00259 * 179.97438 * 11 10 8 28 28 H 1.08999 * 108.87533 * 1.39459 * 16 7 2 29 29 H 1.09002 * 109.62826 * 278.97599 * 17 16 7 30 30 H 1.09001 * 109.62875 * 39.55862 * 17 16 7 31 31 H 1.09006 * 108.87169 * 333.37186 * 18 17 16 32 32 H 1.08993 * 108.87684 * 214.93536 * 18 17 16 33 33 H 1.09000 * 108.81294 * 197.42796 * 19 18 17 34 34 H 1.09003 * 108.72401 * 79.08597 * 19 18 17 35 35 H 1.09003 * 108.87526 * 197.50315 * 20 19 18 36 36 H 1.09003 * 108.80032 * 79.00996 * 20 19 18 37 37 H 1.09005 * 109.62645 * 334.44551 * 21 20 19 38 38 H 1.08996 * 109.63246 * 213.86701 * 21 20 19 39 39 H 1.08999 * 108.90032 * 303.43542 * 22 16 7 40 40 H 1.08999 * 108.89714 * 62.03158 * 22 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4051 -1.8572 1.1563 6 8 2.0657 -0.0687 2.4092 7 7 2.0184 -0.6907 -1.1961 8 6 2.6621 0.0135 -2.1784 9 1 2.2919 -0.0130 -3.1926 10 6 3.7905 0.7611 -1.8706 11 7 4.0951 1.8198 -2.5909 12 14 4.8766 0.2647 -0.4342 13 1 5.8305 -0.7849 -0.8744 14 1 5.6316 1.4490 0.0479 15 1 4.0312 -0.2647 0.6659 16 6 1.8235 -2.1357 -1.3384 17 6 3.2032 -2.8232 -1.3895 18 6 3.0290 -4.2726 -1.0245 19 6 2.8522 -5.1748 -2.2608 20 6 1.9304 -4.5530 -3.3272 21 6 0.7220 -3.8875 -2.7264 22 6 1.0329 -2.3890 -2.5338 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5136 -0.8900 26 1 2.3956 -0.5657 3.1703 27 1 4.8833 2.3424 -2.3756 28 1 1.2784 -2.5052 -0.4698 29 1 3.6137 -2.7460 -2.3963 30 1 3.8771 -2.3451 -0.6785 31 1 2.1507 -4.3724 -0.3866 32 1 3.9058 -4.6040 -0.4684 33 1 2.4293 -6.1277 -1.9429 34 1 3.8312 -5.3558 -2.7047 35 1 1.5992 -5.3375 -4.0077 36 1 2.4964 -3.8125 -3.8923 37 1 0.4957 -4.3414 -1.7616 38 1 -0.1300 -4.0015 -3.3966 39 1 0.0939 -1.8406 -2.4589 40 1 1.5829 -2.0295 -3.4035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381133969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:22 Heat of formation + Delta-G solvation = -82.403038 kcal Electronic energy + Delta-G solvation = -21265.032130 eV Core-core repulsion = 18272.981327 eV Total energy + Delta-G solvation = -2992.050803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.89804 -38.35093 -35.78539 -34.98409 -32.05452 -31.56196 -31.36800 -28.65861 -24.57013 -24.48520 -23.86268 -22.52844 -20.02078 -19.56909 -18.66825 -17.46091 -16.61198 -16.06308 -15.44808 -14.91704 -14.59144 -14.34557 -13.91294 -13.56535 -13.14030 -12.98129 -12.48927 -12.38692 -12.15986 -11.87600 -11.56643 -11.47684 -11.35526 -11.12074 -10.81705 -10.71919 -10.54038 -10.37048 -10.14281 -10.06142 -9.81271 -9.71742 -9.57876 -9.38746 -9.05807 -8.45763 -6.59747 -6.14388 -3.71633 2.90098 3.34992 3.44886 3.53711 3.77933 4.46763 4.78609 5.15657 5.26467 5.34785 5.40433 5.75099 5.82053 5.86780 5.88039 5.92293 5.96500 6.06205 6.16587 6.20105 6.25169 6.32868 6.52298 6.56159 6.62923 6.67290 6.70622 6.71843 6.80939 6.88052 7.03888 7.09409 7.10739 7.38227 7.48605 8.00298 8.51820 8.60229 8.97165 9.58426 10.11401 10.98314 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.010644 C = 0.009346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.099449 B = 2630.023105 C = 2995.347752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.103 0.897 4 C 0.465 3.535 5 O -0.513 6.513 6 O -0.530 6.530 7 N -0.578 5.578 8 C -0.281 4.281 9 H 0.077 0.923 10 C 0.059 3.941 11 N -0.879 5.879 12 Si 0.865 3.135 13 H -0.284 1.284 14 H -0.303 1.303 15 H -0.263 1.263 16 C 0.180 3.820 17 C -0.108 4.108 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.122 4.122 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.391 0.609 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -8.098 4.643 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.068 3.932 3 H 0.121 0.879 4 C 0.306 3.694 5 O -0.401 6.401 6 O -0.341 6.341 7 N -0.300 5.300 8 C -0.410 4.410 9 H 0.095 0.905 10 C -0.146 4.146 11 N -0.517 5.517 12 Si 0.694 3.306 13 H -0.211 1.211 14 H -0.231 1.231 15 H -0.189 1.189 16 C 0.076 3.924 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.160 4.160 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.248 0.752 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.630 -8.029 4.200 10.667 hybrid contribution 1.292 -0.565 1.372 1.968 sum -4.338 -8.593 5.572 11.122 Atomic orbital electron populations 1.22192 0.95195 1.01601 1.02100 1.20358 0.93512 0.96810 0.82483 0.87931 1.25247 0.73577 0.86062 0.84476 1.90629 1.44868 1.19371 1.85207 1.84660 1.79595 1.49997 1.19852 1.44186 1.65934 1.02583 1.17272 1.18508 1.06156 1.25318 0.90969 0.90533 1.25941 0.96732 0.95505 0.96405 1.69971 1.26473 1.13755 1.41463 0.87171 0.82037 0.77335 0.84062 1.21077 1.23057 1.18854 1.19425 0.93688 0.83829 0.95483 1.21538 0.99135 0.93077 1.00905 1.21254 1.00731 0.96231 0.96489 1.21916 0.98876 0.98045 0.96293 1.21322 0.96737 0.99579 0.97735 1.21286 0.96862 0.96793 1.00253 1.20906 1.00139 0.93733 1.01237 0.93094 0.92954 0.90731 0.75201 0.92513 0.92545 0.92562 0.92318 0.92583 0.93754 0.93350 0.93035 0.93431 0.91698 0.92402 0.92890 0.93041 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.28 37.15 0.34 -2.22 16 2 C 0.18 3.67 2.16 -69.08 -0.15 3.52 16 3 H 0.10 2.27 7.18 -51.93 -0.37 1.90 16 4 C 0.46 9.28 4.75 36.01 0.17 9.45 16 5 O -0.51 -11.03 12.73 -18.75 -0.24 -11.27 16 6 O -0.53 -8.91 13.42 -39.27 -0.53 -9.44 16 7 N -0.58 -12.99 1.35 -162.73 -0.22 -13.21 16 8 C -0.28 -7.34 8.38 -15.06 -0.13 -7.47 16 9 H 0.08 2.18 7.42 -52.49 -0.39 1.79 16 10 C 0.06 1.61 5.03 -17.43 -0.09 1.52 16 11 N -0.88 -25.56 13.97 55.49 0.78 -24.79 16 12 Si 0.86 21.85 25.22 -169.99 -4.29 17.57 16 13 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 14 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 15 H -0.26 -6.35 3.49 56.52 0.20 -6.16 16 16 C 0.18 3.66 0.79 -70.80 -0.06 3.60 16 17 C -0.11 -2.24 3.84 -27.35 -0.10 -2.34 16 18 C -0.11 -1.90 5.31 -27.44 -0.15 -2.05 16 19 C -0.11 -1.69 5.85 -25.62 -0.15 -1.84 16 20 C -0.12 -1.72 5.32 -27.44 -0.15 -1.87 16 21 C -0.11 -1.73 5.61 -27.34 -0.15 -1.88 16 22 C -0.12 -2.23 4.43 -29.60 -0.13 -2.36 16 23 H 0.05 0.83 7.53 -51.93 -0.39 0.44 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.39 4.80 9.10 45.56 0.41 5.21 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.06 1.16 5.13 -51.93 -0.27 0.89 16 29 H 0.06 1.22 6.97 -51.93 -0.36 0.86 16 30 H 0.06 1.38 4.91 -51.93 -0.25 1.13 16 31 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.05 6.62 -51.93 -0.34 0.71 16 37 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.38 6.45 -51.93 -0.33 1.04 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -29.49 293.53 -6.54 -36.03 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.73 Total: 4.64 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.73 Total: -3.95 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.56 Total: -38.00 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.77 Total: -20.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.29 Total: 17.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.49 -6.54 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381133969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.373 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds