Wall clock time and date at job start Mon Mar 30 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00099 * 2 1 4 4 H 1.48493 * 109.46929 * 85.14622 * 3 2 1 5 5 H 1.48497 * 109.46719 * 205.14629 * 3 2 1 6 6 H 1.48493 * 109.47108 * 325.14192 * 3 2 1 7 7 C 1.37879 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00249 * 173.40206 * 7 2 1 9 9 C 1.50702 * 119.99924 * 353.40178 * 7 2 1 10 10 H 1.09000 * 110.43190 * 55.89345 * 9 7 2 11 11 C 1.54889 * 110.48398 * 293.35545 * 9 7 2 12 12 C 1.54886 * 102.74692 * 203.37944 * 11 9 7 13 13 C 1.54269 * 104.19570 * 37.94135 * 12 11 9 14 14 H 1.09001 * 110.03097 * 95.72281 * 13 12 11 15 15 N 1.46898 * 110.03196 * 217.10473 * 13 12 11 16 16 C 1.46901 * 111.00269 * 273.54532 * 15 13 12 17 17 C 1.52999 * 109.47620 * 179.97438 * 16 15 13 18 18 H 1.08998 * 108.84791 * 305.70708 * 17 16 15 19 19 C 1.52942 * 108.89102 * 187.12524 * 17 16 15 20 20 C 1.54988 * 109.04300 * 208.99510 * 19 17 16 21 21 S 1.83992 * 100.82223 * 41.60748 * 20 19 17 22 22 C 1.53711 * 108.88355 * 64.27648 * 17 16 15 23 23 C 1.54083 * 106.62128 * 336.28002 * 13 12 11 24 24 H 0.97005 * 120.00024 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.75718 * 321.69472 * 11 9 7 26 26 H 1.09002 * 110.75528 * 84.88235 * 11 9 7 27 27 H 1.08998 * 110.49053 * 156.62208 * 12 11 9 28 28 H 1.09002 * 110.48486 * 279.26587 * 12 11 9 29 29 H 1.00904 * 111.00112 * 149.59689 * 15 13 12 30 30 H 1.09002 * 109.47197 * 300.00391 * 16 15 13 31 31 H 1.09005 * 109.46760 * 59.99855 * 16 15 13 32 32 H 1.08996 * 109.59651 * 329.03884 * 19 17 16 33 33 H 1.09000 * 109.59966 * 89.17501 * 19 17 16 34 34 H 1.09004 * 111.23946 * 283.70250 * 20 19 17 35 35 H 1.08995 * 111.15005 * 159.47515 * 20 19 17 36 36 H 1.08997 * 110.34349 * 242.49072 * 22 17 16 37 37 H 1.08997 * 110.34059 * 4.75281 * 22 17 16 38 38 H 1.08999 * 110.16141 * 240.87763 * 23 13 12 39 39 H 1.09007 * 110.00330 * 119.38439 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3941 2.1056 1.3950 5 1 3.5942 1.4127 -0.5949 6 1 1.5018 2.6209 -0.8002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 -0.1080 9 6 1.2584 -2.4949 0.1489 10 1 0.4915 -2.5843 -0.6206 11 6 0.6262 -2.5983 1.5590 12 6 0.4640 -4.1268 1.7496 13 6 1.7294 -4.7253 1.1012 14 1 2.4896 -4.9042 1.8617 15 7 1.3977 -5.9818 0.4164 16 6 1.4581 -7.1190 1.3443 17 6 1.1068 -8.4068 0.5966 18 1 0.1423 -8.2770 0.1057 19 6 0.9990 -9.5514 1.6052 20 6 1.3744 -10.8811 0.9031 21 16 2.8205 -10.3456 -0.1005 22 6 2.1785 -8.6687 -0.4737 23 6 2.2341 -3.6878 0.0799 24 1 -0.4850 0.8401 0.0004 25 1 1.2948 -2.1837 2.3135 26 1 -0.3419 -2.0980 1.5860 27 1 0.4238 -4.3770 2.8098 28 1 -0.4309 -4.4821 1.2387 29 1 2.0017 -6.1310 -0.3780 30 1 2.4646 -7.1999 1.7550 31 1 0.7462 -6.9644 2.1552 32 1 1.6798 -9.3710 2.4370 33 1 -0.0228 -9.6140 1.9795 34 1 0.5633 -11.2342 0.2663 35 1 1.6603 -11.6421 1.6292 36 1 1.7339 -8.6461 -1.4686 37 1 2.9777 -7.9315 -0.3980 38 1 2.2309 -4.1153 -0.9227 39 1 3.2404 -3.3630 0.3445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382032141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:45 Heat of formation + Delta-G solvation = -25.142997 kcal Electronic energy + Delta-G solvation = -16930.237621 eV Core-core repulsion = 14383.422670 eV Total energy + Delta-G solvation = -2546.814950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.40287 -36.82062 -33.70868 -31.97654 -29.78785 -28.11239 -27.25542 -25.63057 -23.68762 -22.70172 -20.23541 -19.36593 -18.98142 -16.89866 -16.47548 -16.25901 -14.99104 -14.72134 -14.61184 -14.51353 -13.78186 -13.51857 -13.11687 -12.62304 -12.47271 -12.28244 -12.09979 -12.02450 -11.46181 -11.26230 -11.04878 -10.90134 -10.64427 -10.50961 -10.40104 -10.15268 -9.99632 -9.87943 -9.51784 -9.11262 -8.76829 -8.31561 -8.10889 -7.90942 -5.97650 -3.98833 1.65779 2.12644 3.32107 3.39397 3.42243 4.14812 4.31938 4.47124 4.64337 4.72114 4.83755 5.02076 5.20404 5.28067 5.34580 5.37468 5.47333 5.52854 5.58910 5.63881 5.76797 5.89926 5.97348 6.03428 6.33598 6.49361 6.63492 6.72581 6.87720 7.05010 7.17392 7.34520 7.51505 7.67333 7.73971 7.93095 8.08661 8.50389 9.04237 9.64260 11.12302 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.054321 B = 0.003635 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.329820 B = 7700.727443 C = 7991.706279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.035 0.965 11 C -0.103 4.103 12 C -0.114 4.114 13 C 0.083 3.917 14 H 0.033 0.967 15 N -0.683 5.683 16 C 0.067 3.933 17 C -0.095 4.095 18 H 0.091 0.909 19 C -0.120 4.120 20 C -0.066 4.066 21 S -0.311 6.311 22 C -0.060 4.060 23 C -0.117 4.117 24 H 0.259 0.741 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.334 0.666 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -18.728 3.037 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.153 4.153 13 C -0.025 4.025 14 H 0.051 0.949 15 N -0.315 5.315 16 C -0.063 4.063 17 C -0.116 4.116 18 H 0.109 0.891 19 C -0.160 4.160 20 C -0.214 4.214 21 S -0.086 6.086 22 C -0.208 4.208 23 C -0.155 4.155 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.426 -19.080 2.777 19.333 hybrid contribution 0.405 1.424 0.444 1.546 sum 1.831 -17.656 3.221 18.040 Atomic orbital electron populations 1.69976 1.05880 1.26340 1.50495 1.24975 0.94777 0.98944 0.95153 0.86678 0.80025 0.83967 0.77921 1.20796 1.19961 1.21325 1.21230 0.93234 0.90906 1.49931 0.92821 1.19376 0.93143 0.90941 0.93207 0.94653 1.22446 1.00942 0.91069 0.99724 1.22474 0.97080 0.98289 0.97408 1.22338 0.96339 0.88401 0.95469 0.94892 1.60762 1.59289 1.01645 1.09853 1.22067 0.99558 0.89330 0.95395 1.21697 0.99546 0.95327 0.94994 0.89108 1.22388 1.03191 0.91485 0.98898 1.24292 0.96886 1.00174 1.00016 1.87867 1.31379 1.19266 1.70049 1.24079 1.00590 0.94088 1.02020 1.22499 1.00231 0.96562 0.96178 0.93145 0.93643 0.91898 0.94285 0.91614 0.84660 0.95232 0.90731 0.90299 0.89887 0.89158 0.87772 0.88868 0.88510 0.93243 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 12.71 55.43 0.70 -25.07 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.18 8.45 -34.44 -0.29 -14.47 16 8 H 0.05 1.46 7.54 -52.49 -0.40 1.07 16 9 C 0.05 1.29 2.64 -90.11 -0.24 1.05 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -2.39 5.89 -24.74 -0.15 -2.54 16 12 C -0.11 -2.16 6.43 -25.07 -0.16 -2.32 16 13 C 0.08 1.46 3.25 -66.48 -0.22 1.24 16 14 H 0.03 0.56 7.83 -51.93 -0.41 0.16 16 15 N -0.68 -9.93 6.25 -105.42 -0.66 -10.59 16 16 C 0.07 0.79 4.51 -3.82 -0.02 0.77 16 17 C -0.10 -0.93 2.88 -90.28 -0.26 -1.19 16 18 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.12 -0.97 5.78 -25.71 -0.15 -1.12 16 20 C -0.07 -0.52 7.52 38.21 0.29 -0.23 16 21 S -0.31 -3.39 23.22 -107.50 -2.50 -5.89 16 22 C -0.06 -0.61 6.35 37.53 0.24 -0.37 16 23 C -0.12 -2.38 6.05 -25.51 -0.15 -2.53 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 26 H 0.06 1.58 7.82 -51.93 -0.41 1.18 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 29 H 0.33 4.57 6.58 -39.29 -0.26 4.31 16 30 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.08 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.03 6.86 -51.93 -0.36 0.67 16 38 H 0.05 0.96 7.50 -51.93 -0.39 0.57 16 39 H 0.05 1.10 7.65 -51.93 -0.40 0.71 16 LS Contribution 315.28 15.07 4.75 4.75 Total: -1.00 -28.67 315.28 -10.71 -39.38 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.79 Total: 1.10 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.20 Total: -20.04 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.05 Total: -35.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.50 Total: -5.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.67 -10.71 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382032141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.239 kcal (2) G-P(sol) polarization free energy of solvation -28.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds