Wall clock time and date at job start Mon Mar 30 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00099 * 2 1 4 4 H 1.48493 * 109.46929 * 85.14622 * 3 2 1 5 5 H 1.48497 * 109.46719 * 205.14629 * 3 2 1 6 6 H 1.48493 * 109.47108 * 325.14192 * 3 2 1 7 7 C 1.37879 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00249 * 173.40206 * 7 2 1 9 9 C 1.50702 * 119.99924 * 353.40178 * 7 2 1 10 10 H 1.09000 * 110.43190 * 55.89345 * 9 7 2 11 11 C 1.54889 * 110.48398 * 293.35545 * 9 7 2 12 12 C 1.54886 * 102.74692 * 203.37944 * 11 9 7 13 13 C 1.54269 * 104.19570 * 37.94135 * 12 11 9 14 14 H 1.09001 * 110.03097 * 95.72281 * 13 12 11 15 15 N 1.46898 * 110.03196 * 217.10473 * 13 12 11 16 16 C 1.46901 * 111.00269 * 273.54532 * 15 13 12 17 17 C 1.52999 * 109.47620 * 179.97438 * 16 15 13 18 18 H 1.08998 * 108.84791 * 305.70708 * 17 16 15 19 19 C 1.52942 * 108.89102 * 187.12524 * 17 16 15 20 20 C 1.54988 * 109.04300 * 208.99510 * 19 17 16 21 21 S 1.83992 * 100.82223 * 41.60748 * 20 19 17 22 22 C 1.53711 * 108.88355 * 64.27648 * 17 16 15 23 23 C 1.54083 * 106.62128 * 336.28002 * 13 12 11 24 24 H 0.97005 * 120.00024 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.75718 * 321.69472 * 11 9 7 26 26 H 1.09002 * 110.75528 * 84.88235 * 11 9 7 27 27 H 1.08998 * 110.49053 * 156.62208 * 12 11 9 28 28 H 1.09002 * 110.48486 * 279.26587 * 12 11 9 29 29 H 1.00904 * 111.00112 * 149.59689 * 15 13 12 30 30 H 1.09002 * 109.47197 * 300.00391 * 16 15 13 31 31 H 1.09005 * 109.46760 * 59.99855 * 16 15 13 32 32 H 1.08996 * 109.59651 * 329.03884 * 19 17 16 33 33 H 1.09000 * 109.59966 * 89.17501 * 19 17 16 34 34 H 1.09004 * 111.23946 * 283.70250 * 20 19 17 35 35 H 1.08995 * 111.15005 * 159.47515 * 20 19 17 36 36 H 1.08997 * 110.34349 * 242.49072 * 22 17 16 37 37 H 1.08997 * 110.34059 * 4.75281 * 22 17 16 38 38 H 1.08999 * 110.16141 * 240.87763 * 23 13 12 39 39 H 1.09007 * 110.00330 * 119.38439 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3941 2.1056 1.3950 5 1 3.5942 1.4127 -0.5949 6 1 1.5018 2.6209 -0.8002 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1972 -0.1080 9 6 1.2584 -2.4949 0.1489 10 1 0.4915 -2.5843 -0.6206 11 6 0.6262 -2.5983 1.5590 12 6 0.4640 -4.1268 1.7496 13 6 1.7294 -4.7253 1.1012 14 1 2.4896 -4.9042 1.8617 15 7 1.3977 -5.9818 0.4164 16 6 1.4581 -7.1190 1.3443 17 6 1.1068 -8.4068 0.5966 18 1 0.1423 -8.2770 0.1057 19 6 0.9990 -9.5514 1.6052 20 6 1.3744 -10.8811 0.9031 21 16 2.8205 -10.3456 -0.1005 22 6 2.1785 -8.6687 -0.4737 23 6 2.2341 -3.6878 0.0799 24 1 -0.4850 0.8401 0.0004 25 1 1.2948 -2.1837 2.3135 26 1 -0.3419 -2.0980 1.5860 27 1 0.4238 -4.3770 2.8098 28 1 -0.4309 -4.4821 1.2387 29 1 2.0017 -6.1310 -0.3780 30 1 2.4646 -7.1999 1.7550 31 1 0.7462 -6.9644 2.1552 32 1 1.6798 -9.3710 2.4370 33 1 -0.0228 -9.6140 1.9795 34 1 0.5633 -11.2342 0.2663 35 1 1.6603 -11.6421 1.6292 36 1 1.7339 -8.6461 -1.4686 37 1 2.9777 -7.9315 -0.3980 38 1 2.2309 -4.1153 -0.9227 39 1 3.2404 -3.3630 0.3445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382032141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:44 Heat of formation + Delta-G solvation = -41.075990 kcal Electronic energy + Delta-G solvation = -16930.928527 eV Core-core repulsion = 14383.422670 eV Total energy + Delta-G solvation = -2547.505857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68004 -38.00961 -35.21419 -33.69598 -30.73928 -29.87968 -28.53579 -26.84607 -25.51288 -23.62312 -21.22931 -21.05418 -20.44637 -18.53730 -17.68507 -17.18690 -16.58944 -16.36809 -15.74126 -15.47841 -15.12827 -14.71885 -14.40618 -14.09454 -13.71806 -13.45698 -13.29257 -13.04818 -12.85650 -12.68019 -12.61430 -12.28587 -12.15174 -11.92572 -11.66329 -11.65353 -11.43120 -11.39610 -10.97613 -10.82894 -10.78675 -10.44104 -9.30124 -8.74233 -8.11478 -6.19690 0.92333 1.40517 1.40525 1.41519 1.51731 2.44030 3.16052 3.19807 3.57395 3.79553 3.96054 4.03687 4.09799 4.11730 4.31600 4.41501 4.45483 4.56580 4.63603 4.72678 4.76691 4.81324 4.87169 4.90453 4.98844 5.08172 5.14460 5.22278 5.28620 5.31940 5.42971 5.50819 5.65903 5.92129 6.01090 6.22429 6.41857 6.52609 6.92269 7.47030 8.98116 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.054321 B = 0.003635 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.329820 B = 7700.727443 C = 7991.706279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.042 3.958 10 H -0.002 1.002 11 C -0.098 4.098 12 C -0.102 4.102 13 C 0.097 3.903 14 H 0.046 0.954 15 N -0.687 5.687 16 C 0.070 3.930 17 C -0.088 4.088 18 H 0.089 0.911 19 C -0.116 4.116 20 C -0.050 4.050 21 S -0.364 6.364 22 C -0.052 4.052 23 C -0.109 4.109 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.341 0.659 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -20.028 3.912 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.024 3.976 10 H 0.016 0.984 11 C -0.137 4.137 12 C -0.140 4.140 13 C -0.013 4.013 14 H 0.064 0.936 15 N -0.320 5.320 16 C -0.060 4.060 17 C -0.108 4.108 18 H 0.108 0.892 19 C -0.156 4.156 20 C -0.198 4.198 21 S -0.139 6.139 22 C -0.200 4.200 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.841 -20.399 3.650 20.805 hybrid contribution 0.251 1.804 0.143 1.827 sum 2.092 -18.596 3.794 19.094 Atomic orbital electron populations 1.70105 1.07316 1.27129 1.51426 1.25766 0.95593 1.02422 0.94902 0.85656 0.78900 0.79705 0.78099 1.20145 1.19184 1.21048 1.21626 0.93402 0.92421 1.49695 0.92977 1.19357 0.93192 0.92083 0.93012 0.98419 1.22258 0.98800 0.94208 0.98416 1.22341 0.97732 0.94782 0.99134 1.22057 0.95552 0.88917 0.94767 0.93644 1.60669 1.59450 1.01428 1.10425 1.22101 0.99778 0.89018 0.95077 1.21652 0.99091 0.94998 0.95041 0.89236 1.22361 1.04326 0.90658 0.98225 1.24397 0.95270 1.00442 0.99678 1.88066 1.34084 1.20467 1.71262 1.24042 1.00421 0.93211 1.02353 1.22349 0.98841 0.95753 0.97773 0.93149 0.94512 0.94912 0.91837 0.91997 0.83975 0.95029 0.90506 0.90286 0.88021 0.88011 0.86224 0.88669 0.89114 0.92556 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 12.71 21.45 0.27 -54.43 16 2 C 0.01 0.67 5.31 84.66 0.45 1.12 16 3 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.53 -29.86 8.45 25.60 0.22 -29.64 16 8 H 0.05 2.86 7.54 -2.91 -0.02 2.83 16 9 C 0.04 2.15 2.64 -10.47 -0.03 2.12 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.10 -4.62 5.89 31.88 0.19 -4.43 16 12 C -0.10 -3.72 6.43 31.67 0.20 -3.51 16 13 C 0.10 3.20 3.25 45.71 0.15 3.35 16 14 H 0.05 1.43 7.83 -2.39 -0.02 1.41 16 15 N -0.69 -18.58 6.25 -487.45 -3.05 -21.62 16 16 C 0.07 1.47 4.51 86.30 0.39 1.86 16 17 C -0.09 -1.50 2.88 -10.57 -0.03 -1.53 16 18 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 19 C -0.12 -1.51 5.78 31.26 0.18 -1.33 16 20 C -0.05 -0.65 7.52 72.66 0.55 -0.11 16 21 S -0.36 -7.43 23.22 -56.49 -1.31 -8.74 16 22 C -0.05 -0.98 6.35 72.22 0.46 -0.52 16 23 C -0.11 -4.40 6.05 31.39 0.19 -4.21 16 24 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 25 H 0.04 1.75 8.05 -2.39 -0.02 1.73 16 26 H 0.03 1.69 7.82 -2.39 -0.02 1.67 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 2.31 8.05 -2.39 -0.02 2.30 16 29 H 0.34 8.69 6.58 -89.69 -0.59 8.10 16 30 H 0.03 0.67 8.06 -2.39 -0.02 0.65 16 31 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 32 H 0.08 1.06 7.83 -2.39 -0.02 1.04 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.80 6.86 -2.39 -0.02 1.79 16 38 H 0.06 2.15 7.50 -2.39 -0.02 2.13 16 39 H 0.05 2.07 7.65 -2.38 -0.02 2.05 16 Total: -1.00 -62.47 315.28 1.27 -61.20 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.42 Total: 14.23 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 2.91 Total: -36.83 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.77 Total: -76.06 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.31 Total: -8.74 kcal Total: -62.47 1.27 -61.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382032141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.126 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds