Wall clock time and date at job start Mon Mar 30 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09001 * 110.67498 * 56.76039 * 9 7 2 11 11 C 1.54899 * 110.75347 * 293.33110 * 9 7 2 12 12 C 1.54268 * 104.19071 * 203.74161 * 11 9 7 13 13 C 1.53868 * 106.60145 * 23.61092 * 12 11 9 14 14 H 1.09006 * 110.03349 * 240.71573 * 13 12 11 15 15 N 1.46903 * 110.07883 * 119.30429 * 13 12 11 16 16 C 1.46894 * 110.99914 * 87.80385 * 15 13 12 17 17 C 1.53005 * 109.47270 * 180.02562 * 16 15 13 18 18 H 1.08995 * 109.60017 * 53.88981 * 17 16 15 19 19 C 1.53859 * 109.60882 * 174.05129 * 17 16 15 20 20 C 1.55136 * 106.89677 * 167.17822 * 19 17 16 21 21 S 1.83452 * 102.20334 * 317.88028 * 20 19 17 22 22 C 1.54270 * 109.60657 * 293.54966 * 17 16 15 23 23 C 1.54269 * 106.60008 * 359.97438 * 13 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08996 * 110.48607 * 322.41763 * 11 9 7 26 26 H 1.08995 * 110.48824 * 85.06819 * 11 9 7 27 27 H 1.08997 * 110.03361 * 264.32158 * 12 11 9 28 28 H 1.09004 * 110.02961 * 142.89454 * 12 11 9 29 29 H 1.00894 * 111.00637 * 211.76412 * 15 13 12 30 30 H 1.08998 * 109.47786 * 300.00936 * 16 15 13 31 31 H 1.09012 * 109.47182 * 60.00721 * 16 15 13 32 32 H 1.09001 * 109.97243 * 286.53501 * 19 17 16 33 33 H 1.08992 * 109.98032 * 47.81417 * 19 17 16 34 34 H 1.09007 * 110.85538 * 199.70084 * 20 19 17 35 35 H 1.09001 * 111.03749 * 76.13800 * 20 19 17 36 36 H 1.08996 * 110.40531 * 330.91517 * 22 17 16 37 37 H 1.09004 * 110.40193 * 93.21816 * 22 17 16 38 38 H 1.08998 * 110.48448 * 217.71550 * 23 13 12 39 39 H 1.08992 * 110.60099 * 95.12651 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.5709 -2.5509 -0.8561 11 6 0.4854 -2.6910 1.3270 12 6 0.3026 -4.2185 1.4418 13 6 1.4124 -4.8592 0.5900 14 1 0.9723 -5.4590 -0.2067 15 7 2.2745 -5.6981 1.4333 16 6 1.7444 -7.0644 1.5331 17 6 2.6666 -7.9060 2.4176 18 1 2.8074 -7.4081 3.3769 19 6 2.0391 -9.2920 2.6463 20 6 3.1451 -10.1926 3.2566 21 16 4.6135 -9.7348 2.2566 22 6 4.0316 -8.0834 1.7210 23 6 2.2305 -3.6988 -0.0133 24 1 -0.4849 0.8401 0.0041 25 1 1.0741 -2.3133 2.1629 26 1 -0.4833 -2.1930 1.2855 27 1 -0.6760 -4.5073 1.0585 28 1 0.4035 -4.5294 2.4816 29 1 3.2230 -5.7025 1.0893 30 1 0.7471 -7.0361 1.9719 31 1 1.6912 -7.5071 0.5384 32 1 1.2006 -9.2116 3.3381 33 1 1.7009 -9.7088 1.6977 34 1 2.9015 -11.2473 3.1281 35 1 3.3040 -9.9582 4.3091 36 1 3.9120 -8.0556 0.6380 37 1 4.7274 -7.3097 2.0457 38 1 2.5354 -3.9364 -1.0324 39 1 3.1022 -3.4825 0.6041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382032143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:48 Heat of formation + Delta-G solvation = -27.983557 kcal Electronic energy + Delta-G solvation = -16908.922745 eV Core-core repulsion = 14361.984619 eV Total energy + Delta-G solvation = -2546.938126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.36245 -36.81224 -33.73136 -31.97899 -29.77420 -28.08468 -27.23006 -25.55077 -23.70659 -22.74167 -20.44188 -19.23860 -18.94264 -16.86681 -16.42067 -16.19616 -15.19099 -14.73113 -14.62533 -14.48862 -13.84073 -13.54205 -13.02698 -12.70300 -12.43080 -12.24982 -12.10875 -11.97732 -11.40934 -11.31893 -11.04967 -10.96439 -10.76182 -10.51626 -10.47440 -10.10965 -9.97142 -9.89361 -9.47464 -9.09663 -8.76532 -8.32521 -8.13051 -7.89896 -5.97235 -3.99472 1.62621 2.17117 3.34378 3.38926 3.41593 4.13143 4.33085 4.47303 4.56724 4.71702 4.87002 4.99711 5.16858 5.30402 5.34317 5.38797 5.42919 5.51353 5.57455 5.61209 5.75432 5.84414 5.94674 6.01909 6.33503 6.50077 6.63983 6.77793 6.89625 7.01505 7.16491 7.36275 7.54807 7.64596 7.77157 7.94003 8.07120 8.49551 9.02767 9.64105 11.12582 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.046542 B = 0.003681 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.466435 B = 7605.705918 C = 7980.782797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.030 0.970 11 C -0.099 4.099 12 C -0.116 4.116 13 C 0.083 3.917 14 H 0.033 0.967 15 N -0.682 5.682 16 C 0.070 3.930 17 C -0.095 4.095 18 H 0.093 0.907 19 C -0.123 4.123 20 C -0.069 4.069 21 S -0.307 6.307 22 C -0.065 4.065 23 C -0.119 4.119 24 H 0.259 0.741 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.336 0.664 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.042 0.958 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -17.992 4.923 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.051 0.949 15 N -0.313 5.313 16 C -0.061 4.061 17 C -0.115 4.115 18 H 0.111 0.889 19 C -0.162 4.162 20 C -0.217 4.217 21 S -0.082 6.082 22 C -0.213 4.213 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.707 -18.257 5.273 19.362 hybrid contribution -0.365 1.172 -0.634 1.381 sum 3.342 -17.086 4.639 18.017 Atomic orbital electron populations 1.69953 1.05880 1.26474 1.50632 1.24977 0.94825 0.98970 0.95155 0.86713 0.79637 0.83380 0.78574 1.20366 1.21383 1.20287 1.21096 0.92718 0.90577 1.50678 0.92799 1.19511 0.92398 0.91058 0.93668 0.95136 1.22272 1.01020 0.90639 0.99840 1.22274 0.95637 0.98741 0.98763 1.22299 0.94242 0.93567 0.92482 0.94878 1.60713 1.05663 1.09172 1.55790 1.21969 0.98185 0.88861 0.97105 1.22046 0.92930 0.95786 1.00722 0.88859 1.22590 0.98046 0.93595 1.01994 1.24216 0.93545 1.02907 1.01074 1.87590 1.31041 1.23756 1.65769 1.24123 0.99070 0.94820 1.03290 1.22660 0.99455 0.95708 0.97917 0.93088 0.93403 0.92015 0.93824 0.92474 0.84622 0.90650 0.95332 0.89527 0.90316 0.88135 0.89106 0.89158 0.88224 0.93872 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 12.43 55.43 0.69 -25.07 16 2 C 0.06 1.74 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.10 8.49 -34.44 -0.29 -14.40 16 8 H 0.05 1.46 7.77 -52.49 -0.41 1.05 16 9 C 0.05 1.30 2.72 -89.79 -0.24 1.06 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.10 -2.32 5.76 -25.07 -0.14 -2.46 16 12 C -0.12 -2.19 6.55 -25.62 -0.17 -2.36 16 13 C 0.08 1.44 3.25 -66.60 -0.22 1.22 16 14 H 0.03 0.56 7.81 -51.93 -0.41 0.15 16 15 N -0.68 -9.79 6.17 -105.54 -0.65 -10.44 16 16 C 0.07 0.80 4.87 -3.82 -0.02 0.78 16 17 C -0.09 -0.92 2.80 -89.51 -0.25 -1.17 16 18 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 19 C -0.12 -0.98 5.78 -25.15 -0.15 -1.13 16 20 C -0.07 -0.56 7.38 38.29 0.28 -0.27 16 21 S -0.31 -3.33 23.26 -107.50 -2.50 -5.83 16 22 C -0.06 -0.66 5.93 37.82 0.22 -0.43 16 23 C -0.12 -2.42 5.66 -25.09 -0.14 -2.56 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 26 H 0.06 1.56 7.64 -51.93 -0.40 1.17 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 29 H 0.34 4.54 7.47 -39.29 -0.29 4.24 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.33 7.94 -51.92 -0.41 -0.09 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.91 7.80 -51.93 -0.41 0.51 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.31 7.85 -51.93 -0.41 0.91 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -28.49 317.21 -10.83 -39.32 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.92 Total: 0.93 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.21 Total: -20.08 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.04 Total: -35.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -2.50 Total: -5.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.49 -10.83 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382032143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.339 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds