Wall clock time and date at job start Mon Mar 30 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81395 * 109.46791 * 2 1 4 4 C 1.81407 * 102.99856 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.28472 * 55.67180 * 4 3 2 6 6 C 1.54256 * 110.32344 * 293.54588 * 4 3 2 7 7 C 1.54378 * 105.06395 * 241.00353 * 6 4 3 8 8 N 1.48568 * 104.59263 * 336.14843 * 7 6 4 9 9 C 1.46895 * 110.99975 * 159.03983 * 8 7 6 10 10 C 1.53002 * 109.46994 * 75.98450 * 9 8 7 11 11 C 1.50700 * 115.54938 * 269.70328 * 10 9 8 12 12 H 1.08002 * 119.99633 * 114.47500 * 11 10 9 13 13 C 1.37872 * 120.00376 * 294.47580 * 11 10 9 14 14 N 1.31519 * 120.00005 * 350.81307 * 13 11 10 15 15 Si 1.86801 * 120.00098 * 170.81176 * 13 11 10 16 16 H 1.48494 * 109.47120 * 90.00221 * 15 13 11 17 17 H 1.48505 * 109.46861 * 210.00258 * 15 13 11 18 18 H 1.48499 * 109.46934 * 330.00043 * 15 13 11 19 19 C 1.53001 * 117.49909 * 123.99826 * 10 9 8 20 20 C 1.52997 * 59.99945 * 252.51151 * 19 10 9 21 21 C 1.48565 * 104.21926 * 39.48198 * 8 7 6 22 22 H 1.09004 * 109.47480 * 299.99875 * 1 2 3 23 23 H 1.08997 * 109.47318 * 59.99915 * 1 2 3 24 24 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46959 * 240.00122 * 2 1 3 26 26 H 1.09001 * 109.46612 * 120.00066 * 2 1 3 27 27 H 1.08996 * 110.32533 * 122.10069 * 6 4 3 28 28 H 1.09007 * 110.32730 * 359.89975 * 6 4 3 29 29 H 1.08998 * 110.41136 * 94.92449 * 7 6 4 30 30 H 1.08997 * 110.41380 * 217.37054 * 7 6 4 31 31 H 1.08998 * 109.46761 * 195.98261 * 9 8 7 32 32 H 1.08994 * 109.47280 * 315.98398 * 9 8 7 33 33 H 0.96997 * 120.00017 * 185.02371 * 14 13 11 34 34 H 1.09008 * 117.50084 * 359.97438 * 19 10 9 35 35 H 1.09000 * 117.49897 * 145.01758 * 19 10 9 36 36 H 1.09004 * 117.49709 * 252.50575 * 20 19 10 37 37 H 1.09001 * 117.52266 * 107.48421 * 20 19 10 38 38 H 1.08997 * 110.40836 * 201.73698 * 21 8 7 39 39 H 1.09000 * 110.40856 * 79.30149 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2479 0.8903 -0.8433 6 6 4.4038 0.8715 1.3272 7 6 5.3443 1.9175 1.9631 8 7 5.8288 2.7306 0.8179 9 6 6.3190 4.0390 1.2713 10 6 7.6944 3.8714 1.9202 11 6 7.6854 3.6112 3.4045 12 1 8.0367 2.6650 3.7890 13 6 7.2287 4.5808 4.2718 14 7 6.9718 5.7919 3.8278 15 14 6.9747 4.1745 6.0773 16 1 8.2275 4.4462 6.8268 17 1 5.8786 5.0141 6.6241 18 1 6.6159 2.7402 6.2161 19 6 8.8481 4.7026 1.3553 20 6 8.7891 3.1967 1.0912 21 6 4.6349 2.8819 -0.0532 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.9437 -0.0555 1.1342 28 1 3.5500 0.6845 1.9786 29 1 4.7964 2.5426 2.6682 30 1 6.1801 1.4250 2.4601 31 1 6.3994 4.7124 0.4179 32 1 5.6224 4.4558 1.9986 33 1 6.7207 6.4931 4.4492 34 1 8.6273 5.3685 0.5210 35 1 9.6007 5.0615 2.0573 36 1 9.5032 2.5648 1.6195 37 1 8.5294 2.8718 0.0837 38 1 4.9365 3.1154 -1.0742 39 1 3.9760 3.6579 0.3364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382969226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:22 Heat of formation + Delta-G solvation = 20.411208 kcal Electronic energy + Delta-G solvation = -17305.710139 eV Core-core repulsion = 14760.870567 eV Total energy + Delta-G solvation = -2544.839572 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.44777 -36.03397 -32.93958 -31.98002 -31.15557 -28.47065 -25.82856 -24.85295 -23.50953 -21.06932 -20.67931 -20.48651 -18.79461 -16.57301 -15.91077 -15.75583 -15.09255 -14.79650 -14.55863 -13.95346 -13.75846 -13.38305 -12.85370 -12.79915 -12.37059 -11.98207 -11.77057 -11.64415 -11.33866 -11.22957 -11.01793 -10.87307 -10.81442 -10.63965 -10.46730 -10.35756 -10.06017 -9.66717 -9.29211 -8.79834 -8.43271 -8.06181 -7.65558 -7.60798 -6.01921 -4.05145 1.69135 2.61186 3.27883 3.35910 3.38642 4.40378 4.75645 4.76283 4.78993 4.85270 4.91513 5.22314 5.23172 5.31084 5.53700 5.62003 5.64736 5.69389 5.82092 5.89222 6.00574 6.06227 6.08584 6.27670 6.43022 6.58206 6.61849 6.72078 6.90588 6.93594 6.96466 7.18262 7.37533 7.55680 7.75385 7.90133 7.94303 8.51496 8.94791 9.57570 11.06005 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.005743 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.983732 B = 4874.342716 C = 5524.927765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 S -0.265 6.265 4 C -0.051 4.051 5 H 0.090 0.910 6 C -0.123 4.123 7 C 0.053 3.947 8 N -0.499 5.499 9 C 0.093 3.907 10 C 0.057 3.943 11 C -0.490 4.490 12 H 0.058 0.942 13 C 0.071 3.929 14 N -0.879 5.879 15 Si 0.882 3.118 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.177 4.177 20 C -0.191 4.191 21 C 0.053 3.947 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -9.506 -7.138 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 S -0.038 6.038 4 C -0.180 4.180 5 H 0.109 0.891 6 C -0.163 4.163 7 C -0.076 4.076 8 N -0.224 5.224 9 C -0.035 4.035 10 C 0.056 3.944 11 C -0.527 4.527 12 H 0.076 0.924 13 C -0.132 4.132 14 N -0.516 5.516 15 Si 0.710 3.290 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.216 4.216 20 C -0.229 4.229 21 C -0.077 4.077 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.460 -8.640 -7.376 14.783 hybrid contribution -0.004 -0.690 1.417 1.576 sum -9.464 -9.330 -5.959 14.564 Atomic orbital electron populations 1.21504 0.92533 1.02219 1.03118 1.23267 0.99832 0.95980 1.04752 1.86911 1.06625 1.12376 1.97918 1.23916 0.91258 1.01401 1.01464 0.89146 1.22798 0.99663 0.99325 0.94521 1.22945 0.97306 0.94356 0.92971 1.65528 1.25193 1.16872 1.14764 1.21822 0.98060 0.86928 0.96689 1.18683 0.85393 0.97716 0.92603 1.20477 1.42390 1.00796 0.89070 0.92406 1.24964 0.95020 0.95040 0.98188 1.69987 1.46199 1.00968 1.34409 0.86740 0.77963 0.78553 0.85740 1.20703 1.21215 1.19734 1.22738 1.05340 0.91819 1.01664 1.22700 1.05060 0.94999 1.00104 1.22874 0.92010 0.93238 0.99548 0.91720 0.91839 0.91393 0.90409 0.90145 0.91145 0.91074 0.93487 0.89280 0.93770 0.93026 0.93052 0.92227 0.90580 0.91254 0.91097 0.90086 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.92 37.16 0.37 -0.80 16 2 C -0.09 -0.92 6.52 37.16 0.24 -0.67 16 3 S -0.26 -3.61 20.77 -107.50 -2.23 -5.85 16 4 C -0.05 -0.73 3.57 -25.35 -0.09 -0.83 16 5 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.12 -1.83 6.53 -25.35 -0.17 -1.99 16 7 C 0.05 1.00 5.68 -2.18 -0.01 0.98 16 8 N -0.50 -9.76 5.12 -229.97 -1.18 -10.93 16 9 C 0.09 2.11 4.74 -3.83 -0.02 2.09 16 10 C 0.06 1.39 1.30 -155.66 -0.20 1.19 16 11 C -0.49 -13.02 7.96 -34.44 -0.27 -13.30 16 12 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 13 C 0.07 1.91 5.17 -17.82 -0.09 1.82 16 14 N -0.88 -24.68 12.81 55.43 0.71 -23.97 16 15 Si 0.88 20.85 29.55 -169.99 -5.02 15.83 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.18 -4.20 9.88 -26.73 -0.26 -4.47 16 20 C -0.19 -4.25 9.74 -26.73 -0.26 -4.52 16 21 C 0.05 0.88 6.01 -2.18 -0.01 0.87 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.08 0.80 7.83 -51.92 -0.41 0.39 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.00 7.32 -51.93 -0.38 0.62 16 29 H 0.05 0.98 7.73 -51.93 -0.40 0.58 16 30 H 0.09 1.79 7.87 -51.93 -0.41 1.38 16 31 H 0.04 0.99 7.80 -51.93 -0.41 0.58 16 32 H 0.05 1.32 7.00 -51.93 -0.36 0.96 16 33 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 34 H 0.06 1.34 8.03 -51.92 -0.42 0.92 16 35 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.86 7.68 -51.93 -0.40 0.46 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -27.48 325.42 -10.56 -38.04 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.96 Total: 1.60 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.78 Total: -19.62 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.47 Total: -34.91 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.23 Total: -5.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.48 -10.56 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382969226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.451 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds