Wall clock time and date at job start Mon Mar 30 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81403 * 109.46943 * 2 1 4 4 C 1.81400 * 102.99837 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.27554 * 307.09157 * 4 3 2 6 6 C 1.54599 * 110.30813 * 69.28964 * 4 3 2 7 7 C 1.54933 * 102.92268 * 140.86858 * 6 4 3 8 8 N 1.48525 * 103.22938 * 322.58781 * 7 6 4 9 9 C 1.46901 * 111.00403 * 159.72124 * 8 7 6 10 10 C 1.53000 * 109.47157 * 58.39334 * 9 8 7 11 11 C 1.50697 * 115.54764 * 54.71741 * 10 9 8 12 12 H 1.08003 * 120.00301 * 249.71006 * 11 10 9 13 13 C 1.37883 * 120.00121 * 69.71776 * 11 10 9 14 14 N 1.31517 * 119.99703 * 5.33919 * 13 11 10 15 15 Si 1.86792 * 120.00285 * 185.33570 * 13 11 10 16 16 H 1.48500 * 109.47440 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47196 * 60.00047 * 15 13 11 18 18 H 1.48504 * 109.47208 * 300.00152 * 15 13 11 19 19 C 1.52997 * 117.51984 * 200.42045 * 10 9 8 20 20 C 1.52999 * 60.00176 * 107.48345 * 19 10 9 21 21 C 1.47894 * 105.82224 * 39.20536 * 8 7 6 22 22 H 1.08996 * 109.46561 * 299.99491 * 1 2 3 23 23 H 1.08994 * 109.47591 * 59.99509 * 1 2 3 24 24 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47017 * 240.00739 * 2 1 3 26 26 H 1.08994 * 109.47591 * 120.00491 * 2 1 3 27 27 H 1.08999 * 110.72596 * 259.23126 * 6 4 3 28 28 H 1.09007 * 110.72395 * 22.51013 * 6 4 3 29 29 H 1.09000 * 110.66883 * 204.14757 * 7 6 4 30 30 H 1.09005 * 110.66300 * 81.02117 * 7 6 4 31 31 H 1.09003 * 109.46757 * 298.39679 * 9 8 7 32 32 H 1.08994 * 109.47453 * 178.39664 * 9 8 7 33 33 H 0.97002 * 119.99951 * 355.05953 * 14 13 11 34 34 H 1.08999 * 117.49912 * 214.97106 * 19 10 9 35 35 H 1.08998 * 117.50192 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.49571 * 252.51331 * 20 19 10 37 37 H 1.08994 * 117.49948 * 107.49340 * 20 19 10 38 38 H 1.09002 * 109.92012 * 94.02412 * 21 8 7 39 39 H 1.09006 * 109.91893 * 215.12034 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2432 0.8505 0.8145 6 6 4.4119 0.9361 -1.3573 7 6 5.7265 1.7132 -1.6184 8 7 5.4241 3.0744 -1.1070 9 6 6.6595 3.8167 -0.8229 10 6 7.5017 3.9119 -2.0968 11 6 6.8022 4.4982 -3.2959 12 1 6.5546 3.8688 -4.1379 13 6 6.4786 5.8383 -3.3183 14 7 6.8723 6.6262 -2.3417 15 14 5.4813 6.5348 -4.7359 16 1 5.2686 7.9891 -4.5240 17 1 4.1667 5.8472 -4.8010 18 1 6.2150 6.3216 -6.0092 19 6 8.9949 4.2044 -1.9369 20 6 8.5290 2.8064 -2.3487 21 6 4.6304 2.8752 0.1250 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.6051 -0.1338 -1.2799 28 1 3.6806 1.1415 -2.1391 29 1 5.9501 1.7438 -2.6848 30 1 6.5529 1.2686 -1.0637 31 1 7.2264 3.2967 -0.0506 32 1 6.4095 4.8196 -0.4769 33 1 7.3278 6.2528 -1.5709 34 1 9.4714 4.8209 -2.6990 35 1 9.3776 4.3295 -0.9240 36 1 8.6053 2.0116 -1.6067 37 1 8.6991 2.5033 -3.3818 38 1 5.2873 2.8803 0.9948 39 1 3.8849 3.6650 0.2183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382969227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:24 Heat of formation + Delta-G solvation = 20.135357 kcal Electronic energy + Delta-G solvation = -17403.234209 eV Core-core repulsion = 14858.382675 eV Total energy + Delta-G solvation = -2544.851534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.70068 -36.31403 -32.91390 -31.80937 -31.28341 -28.58185 -25.57369 -24.60892 -23.55536 -21.47232 -20.76683 -20.51667 -19.20154 -16.60311 -16.44370 -15.60107 -15.26826 -14.85454 -14.00118 -13.89933 -13.65541 -13.59130 -13.02126 -12.68329 -12.51472 -12.09808 -12.02788 -11.69501 -11.60362 -11.50468 -10.91431 -10.79151 -10.68171 -10.58065 -10.52446 -10.36864 -9.99241 -9.70769 -9.38562 -8.60550 -8.40925 -8.06061 -7.63117 -7.52054 -6.18850 -3.89111 1.71430 2.63367 3.52642 3.58732 3.74015 4.49690 4.65065 4.68560 4.78893 4.85305 4.92693 5.18575 5.23647 5.26835 5.51749 5.54561 5.56890 5.63291 5.67102 5.82716 5.91299 5.91592 5.96491 6.10941 6.18715 6.31302 6.37864 6.39872 6.50015 6.56140 6.77308 6.89009 7.25867 7.26109 7.60806 7.86172 8.39887 8.55341 9.02273 9.81998 11.20082 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.006041 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.346540 B = 4633.952171 C = 5315.037428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 S -0.244 6.244 4 C -0.061 4.061 5 H 0.083 0.917 6 C -0.120 4.120 7 C 0.051 3.949 8 N -0.478 5.478 9 C 0.089 3.911 10 C 0.035 3.965 11 C -0.543 4.543 12 H 0.048 0.952 13 C 0.030 3.970 14 N -0.911 5.911 15 Si 1.064 2.936 16 H -0.285 1.285 17 H -0.286 1.286 18 H -0.292 1.292 19 C -0.190 4.190 20 C -0.199 4.199 21 C 0.057 3.943 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.270 0.730 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -12.973 5.506 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.244 4.244 3 S -0.017 6.017 4 C -0.190 4.190 5 H 0.102 0.898 6 C -0.160 4.160 7 C -0.078 4.078 8 N -0.202 5.202 9 C -0.039 4.039 10 C 0.034 3.966 11 C -0.581 4.581 12 H 0.067 0.933 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.893 3.107 16 H -0.211 1.211 17 H -0.213 1.213 18 H -0.219 1.219 19 C -0.228 4.228 20 C -0.236 4.236 21 C -0.073 4.073 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.794 -10.299 4.525 14.279 hybrid contribution 1.972 -3.095 1.406 3.930 sum -6.821 -13.394 5.932 16.159 Atomic orbital electron populations 1.21494 0.92489 1.02163 1.03199 1.23279 0.99991 0.96602 1.04513 1.87051 1.05408 1.11410 1.97843 1.24005 0.93044 1.01029 1.00962 0.89836 1.22953 0.99133 0.98480 0.95432 1.23114 0.94029 0.88563 1.02100 1.64714 1.18732 1.13760 1.22989 1.21909 0.88858 0.97469 0.95686 1.19070 0.86336 0.96350 0.94798 1.21056 1.40358 0.96061 1.00621 0.93346 1.25602 0.96226 0.93593 1.02025 1.70759 1.37123 1.37712 1.09081 0.83615 0.76344 0.76057 0.74643 1.21080 1.21275 1.21877 1.22888 1.02346 0.98107 0.99470 1.22838 1.09576 0.91285 0.99893 1.22677 0.97094 0.94170 0.93336 0.91847 0.91603 0.91482 0.90227 0.90664 0.91701 0.89421 0.89024 0.94943 0.97941 0.90654 0.91834 0.89897 0.91951 0.91931 0.90351 0.93768 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.92 37.16 0.37 -0.83 16 2 C -0.10 -0.99 6.59 37.16 0.24 -0.75 16 3 S -0.24 -3.46 20.73 -107.50 -2.23 -5.69 16 4 C -0.06 -0.89 3.50 -25.37 -0.09 -0.97 16 5 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.12 -1.77 6.56 -24.87 -0.16 -1.93 16 7 C 0.05 0.91 5.06 -1.90 -0.01 0.90 16 8 N -0.48 -9.88 5.04 -230.46 -1.16 -11.05 16 9 C 0.09 1.99 4.59 -3.82 -0.02 1.98 16 10 C 0.04 0.85 0.35 -155.66 -0.05 0.80 16 11 C -0.54 -14.87 8.50 -34.44 -0.29 -15.17 16 12 H 0.05 1.35 7.82 -52.48 -0.41 0.94 16 13 C 0.03 0.85 5.43 -17.82 -0.10 0.75 16 14 N -0.91 -27.04 13.56 55.43 0.75 -26.28 16 15 Si 1.06 25.69 29.91 -169.99 -5.08 20.60 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.19 -4.36 9.43 -26.73 -0.25 -4.61 16 20 C -0.20 -4.24 8.78 -26.73 -0.23 -4.48 16 21 C 0.06 0.99 6.38 -2.76 -0.02 0.97 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.37 7.82 -51.93 -0.41 0.97 16 29 H 0.09 1.81 7.79 -51.93 -0.40 1.41 16 30 H 0.03 0.56 7.42 -51.93 -0.39 0.17 16 31 H 0.00 0.05 7.92 -51.93 -0.41 -0.36 16 32 H 0.08 1.87 6.96 -51.93 -0.36 1.51 16 33 H 0.27 7.93 5.81 -40.82 -0.24 7.69 16 34 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.04 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.08 1.55 7.62 -51.93 -0.40 1.16 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -29.37 321.52 -10.32 -39.69 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.83 Total: 1.21 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -0.61 Total: -23.33 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.41 Total: -37.33 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.23 Total: -5.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.37 -10.32 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382969227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.824 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds