Wall clock time and date at job start Mon Mar 30 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81403 * 109.46943 * 2 1 4 4 C 1.81400 * 102.99837 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.27554 * 307.09157 * 4 3 2 6 6 C 1.54599 * 110.30813 * 69.28964 * 4 3 2 7 7 C 1.54933 * 102.92268 * 140.86858 * 6 4 3 8 8 N 1.48525 * 103.22938 * 322.58781 * 7 6 4 9 9 C 1.46901 * 111.00403 * 159.72124 * 8 7 6 10 10 C 1.53000 * 109.47157 * 58.39334 * 9 8 7 11 11 C 1.50697 * 115.54764 * 54.71741 * 10 9 8 12 12 H 1.08003 * 120.00301 * 249.71006 * 11 10 9 13 13 C 1.37883 * 120.00121 * 69.71776 * 11 10 9 14 14 N 1.31517 * 119.99703 * 5.33919 * 13 11 10 15 15 Si 1.86792 * 120.00285 * 185.33570 * 13 11 10 16 16 H 1.48500 * 109.47440 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47196 * 60.00047 * 15 13 11 18 18 H 1.48504 * 109.47208 * 300.00152 * 15 13 11 19 19 C 1.52997 * 117.51984 * 200.42045 * 10 9 8 20 20 C 1.52999 * 60.00176 * 107.48345 * 19 10 9 21 21 C 1.47894 * 105.82224 * 39.20536 * 8 7 6 22 22 H 1.08996 * 109.46561 * 299.99491 * 1 2 3 23 23 H 1.08994 * 109.47591 * 59.99509 * 1 2 3 24 24 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47017 * 240.00739 * 2 1 3 26 26 H 1.08994 * 109.47591 * 120.00491 * 2 1 3 27 27 H 1.08999 * 110.72596 * 259.23126 * 6 4 3 28 28 H 1.09007 * 110.72395 * 22.51013 * 6 4 3 29 29 H 1.09000 * 110.66883 * 204.14757 * 7 6 4 30 30 H 1.09005 * 110.66300 * 81.02117 * 7 6 4 31 31 H 1.09003 * 109.46757 * 298.39679 * 9 8 7 32 32 H 1.08994 * 109.47453 * 178.39664 * 9 8 7 33 33 H 0.97002 * 119.99951 * 355.05953 * 14 13 11 34 34 H 1.08999 * 117.49912 * 214.97106 * 19 10 9 35 35 H 1.08998 * 117.50192 * 359.97438 * 19 10 9 36 36 H 1.09000 * 117.49571 * 252.51331 * 20 19 10 37 37 H 1.08994 * 117.49948 * 107.49340 * 20 19 10 38 38 H 1.09002 * 109.92012 * 94.02412 * 21 8 7 39 39 H 1.09006 * 109.91893 * 215.12034 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5059 -0.0008 5 1 4.2432 0.8505 0.8145 6 6 4.4119 0.9361 -1.3573 7 6 5.7265 1.7132 -1.6184 8 7 5.4241 3.0744 -1.1070 9 6 6.6595 3.8167 -0.8229 10 6 7.5017 3.9119 -2.0968 11 6 6.8022 4.4982 -3.2959 12 1 6.5546 3.8688 -4.1379 13 6 6.4786 5.8383 -3.3183 14 7 6.8723 6.6262 -2.3417 15 14 5.4813 6.5348 -4.7359 16 1 5.2686 7.9891 -4.5240 17 1 4.1667 5.8472 -4.8010 18 1 6.2150 6.3216 -6.0092 19 6 8.9949 4.2044 -1.9369 20 6 8.5290 2.8064 -2.3487 21 6 4.6304 2.8752 0.1250 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.6051 -0.1338 -1.2799 28 1 3.6806 1.1415 -2.1391 29 1 5.9501 1.7438 -2.6848 30 1 6.5529 1.2686 -1.0637 31 1 7.2264 3.2967 -0.0506 32 1 6.4095 4.8196 -0.4769 33 1 7.3278 6.2528 -1.5709 34 1 9.4714 4.8209 -2.6990 35 1 9.3776 4.3295 -0.9240 36 1 8.6053 2.0116 -1.6067 37 1 8.6991 2.5033 -3.3818 38 1 5.2873 2.8803 0.9948 39 1 3.8849 3.6650 0.2183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382969227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:23 Heat of formation + Delta-G solvation = 3.825815 kcal Electronic energy + Delta-G solvation = -17403.941443 eV Core-core repulsion = 14858.382675 eV Total energy + Delta-G solvation = -2545.558768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24002 -38.02217 -33.92469 -33.67127 -32.72011 -29.91883 -27.30248 -26.58317 -24.41086 -23.18175 -22.25266 -21.81988 -21.11485 -18.53313 -17.63994 -16.90778 -16.56298 -15.72287 -15.66309 -15.60803 -15.22595 -15.15248 -14.52924 -14.17809 -13.88898 -13.42971 -13.37389 -13.10929 -12.77682 -12.62660 -12.57415 -12.39098 -12.27370 -12.20793 -11.97249 -11.92693 -11.62431 -11.20922 -10.73864 -10.63244 -10.33450 -10.09005 -9.14309 -8.64379 -8.40318 -6.09813 0.69697 1.55567 1.64848 1.64916 1.81250 2.64378 3.00686 3.33648 3.39599 3.49620 3.68467 4.02210 4.05966 4.12433 4.17409 4.26429 4.29493 4.40538 4.51604 4.53274 4.54691 4.60199 4.77621 4.81150 4.85385 4.87644 4.88267 4.93617 5.04584 5.08736 5.19481 5.24337 5.42253 5.47520 6.09613 6.21083 6.30196 6.43648 6.84789 7.66723 8.99635 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.006041 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.346540 B = 4633.952171 C = 5315.037428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 S -0.298 6.298 4 C -0.046 4.046 5 H 0.109 0.891 6 C -0.108 4.108 7 C 0.053 3.947 8 N -0.510 5.510 9 C 0.103 3.897 10 C 0.008 3.992 11 C -0.544 4.544 12 H 0.035 0.965 13 C -0.017 4.017 14 N -0.939 5.939 15 Si 1.102 2.898 16 H -0.289 1.289 17 H -0.280 1.280 18 H -0.275 1.275 19 C -0.194 4.194 20 C -0.169 4.169 21 C 0.056 3.944 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 -15.656 5.938 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.228 4.228 3 S -0.071 6.071 4 C -0.176 4.176 5 H 0.127 0.873 6 C -0.148 4.148 7 C -0.076 4.076 8 N -0.234 5.234 9 C -0.025 4.025 10 C 0.007 3.993 11 C -0.582 4.582 12 H 0.053 0.947 13 C -0.216 4.216 14 N -0.577 5.577 15 Si 0.927 3.073 16 H -0.215 1.215 17 H -0.206 1.206 18 H -0.200 1.200 19 C -0.232 4.232 20 C -0.206 4.206 21 C -0.073 4.073 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.331 -13.004 4.951 16.754 hybrid contribution 2.117 -2.322 1.273 3.390 sum -7.214 -15.326 6.223 18.046 Atomic orbital electron populations 1.21519 0.91470 1.03600 1.02636 1.23368 1.00634 0.93110 1.05697 1.87306 1.05829 1.16045 1.97970 1.23868 0.92758 0.99298 1.01648 0.87304 1.22882 0.96848 1.00030 0.95028 1.23059 0.96246 0.87669 1.00588 1.64556 1.18208 1.15572 1.25019 1.21593 0.89609 0.96310 0.94991 1.19110 0.86881 0.98601 0.94721 1.21286 1.39763 0.95872 1.01319 0.94688 1.26698 0.96863 0.94579 1.03431 1.70849 1.39009 1.38076 1.09731 0.83110 0.75694 0.75263 0.73261 1.21479 1.20597 1.20042 1.22819 1.01347 0.99260 0.99807 1.22824 1.06246 0.90926 1.00601 1.22631 0.96641 0.95577 0.92405 0.92118 0.92540 0.88866 0.89397 0.88982 0.88160 0.90736 0.91430 0.93689 0.96225 0.94138 0.92736 0.92067 0.90340 0.89049 0.90506 0.92833 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.92 71.98 0.71 -1.30 16 2 C -0.08 -1.41 6.59 71.98 0.47 -0.94 16 3 S -0.30 -8.03 20.73 -56.49 -1.17 -9.20 16 4 C -0.05 -1.25 3.50 31.48 0.11 -1.14 16 5 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 6 C -0.11 -2.90 6.56 31.80 0.21 -2.69 16 7 C 0.05 1.81 5.06 86.65 0.44 2.25 16 8 N -0.51 -20.91 5.04 -883.04 -4.45 -25.36 16 9 C 0.10 4.65 4.59 86.30 0.40 5.05 16 10 C 0.01 0.37 0.35 -52.93 -0.02 0.35 16 11 C -0.54 -30.24 8.50 25.60 0.22 -30.02 16 12 H 0.03 1.98 7.82 -2.91 -0.02 1.96 16 13 C -0.02 -0.96 5.43 84.66 0.46 -0.50 16 14 N -0.94 -57.20 13.56 21.45 0.29 -56.91 16 15 Si 1.10 52.51 29.91 68.60 2.05 54.56 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.19 -8.84 9.43 30.59 0.29 -8.55 16 20 C -0.17 -6.93 8.78 30.59 0.27 -6.66 16 21 C 0.06 1.93 6.38 86.45 0.55 2.48 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.21 7.82 -2.38 -0.02 2.19 16 29 H 0.07 2.62 7.79 -2.39 -0.02 2.60 16 30 H 0.04 1.42 7.42 -2.38 -0.02 1.40 16 31 H 0.02 0.80 7.92 -2.39 -0.02 0.78 16 32 H 0.04 2.07 6.96 -2.39 -0.02 2.05 16 33 H 0.26 15.91 5.81 -92.71 -0.54 15.37 16 34 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.23 7.63 -2.39 -0.02 3.21 16 37 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 39 H 0.06 2.39 7.62 -2.38 -0.02 2.37 16 Total: -1.00 -64.55 321.52 2.05 -62.50 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.22 Total: 16.08 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 4.11 Total: -41.67 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.16 Total: -82.26 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.17 Total: -9.20 kcal Total: -64.55 2.05 -62.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382969227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.322 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds