Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 110.01397 * 2 1 4 4 O 1.20829 * 119.99708 * 5.58065 * 3 2 1 5 5 O 1.34231 * 120.00155 * 185.58345 * 3 2 1 6 6 C 1.54320 * 109.88753 * 238.88457 * 2 1 3 7 7 C 1.55148 * 103.02039 * 262.87880 * 6 2 1 8 8 C 1.54911 * 101.64933 * 324.34663 * 7 6 2 9 9 N 1.47449 * 109.88998 * 121.11631 * 2 1 3 10 10 C 1.46899 * 110.99665 * 242.66301 * 9 2 1 11 11 C 1.53000 * 109.46702 * 171.90327 * 10 9 2 12 12 C 1.52999 * 109.47132 * 176.06289 * 11 10 9 13 13 C 1.53000 * 109.47132 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.46963 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00182 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99515 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00495 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 59.99730 * 18 16 14 20 20 H 1.48502 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47014 * 299.99591 * 18 16 14 22 22 H 1.08997 * 109.47355 * 298.88801 * 1 2 3 23 23 H 1.09006 * 109.47073 * 58.88330 * 1 2 3 24 24 H 1.08993 * 109.47592 * 178.88465 * 1 2 3 25 25 H 0.96703 * 116.99729 * 180.02562 * 5 3 2 26 26 H 1.09003 * 110.70799 * 144.50004 * 6 2 1 27 27 H 1.08991 * 110.85995 * 21.32904 * 6 2 1 28 28 H 1.08998 * 110.99400 * 206.25930 * 7 6 2 29 29 H 1.08999 * 110.98757 * 82.43560 * 7 6 2 30 30 H 1.08996 * 110.37335 * 278.23774 * 8 7 6 31 31 H 1.09001 * 110.46735 * 155.94782 * 8 7 6 32 32 H 1.08994 * 109.47631 * 51.90451 * 10 9 2 33 33 H 1.09001 * 109.47103 * 291.90043 * 10 9 2 34 34 H 1.09007 * 109.47306 * 296.06162 * 11 10 9 35 35 H 1.09006 * 109.47135 * 56.06316 * 11 10 9 36 36 H 1.08998 * 109.46796 * 299.99823 * 12 11 10 37 37 H 1.08996 * 109.47134 * 59.99864 * 12 11 10 38 38 H 1.08993 * 109.47332 * 300.00027 * 13 12 11 39 39 H 1.09006 * 109.47135 * 60.00027 * 13 12 11 40 40 H 0.97003 * 120.00608 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0457 1.4160 0.0000 4 8 1.2738 2.3401 0.1018 5 8 3.3625 1.6507 -0.1131 6 6 2.0549 -0.7499 -1.2424 7 6 2.3500 -2.1710 -0.6941 8 6 2.8585 -1.8556 0.7348 9 7 2.0315 -0.7165 1.1870 10 6 2.8029 0.1814 2.0569 11 6 3.1335 -0.5372 3.3666 12 6 4.0194 0.3614 4.2318 13 6 4.3495 -0.3569 5.5417 14 6 5.2227 0.5280 6.3937 15 1 5.5134 1.5049 6.0364 16 6 5.6511 0.0900 7.6288 17 7 5.2976 -1.0996 8.0637 18 14 6.7328 1.1872 8.6851 19 1 6.0142 2.4522 8.9825 20 1 7.0544 0.4894 9.9560 21 1 7.9904 1.4917 7.9564 22 1 -0.3634 0.4964 0.8997 23 1 -0.3633 0.5311 -0.8798 24 1 -0.3634 -1.0274 -0.0200 25 1 3.6456 2.5753 -0.1078 26 1 2.9665 -0.2844 -1.6169 27 1 1.2947 -0.7881 -2.0226 28 1 3.1229 -2.6642 -1.2835 29 1 1.4420 -2.7731 -0.6614 30 1 3.9111 -1.5739 0.7094 31 1 2.7120 -2.7145 1.3897 32 1 2.2149 1.0739 2.2707 33 1 3.7277 0.4670 1.5557 34 1 2.2104 -0.7608 3.9015 35 1 3.6610 -1.4658 3.1484 36 1 4.9424 0.5849 3.6969 37 1 3.4919 1.2900 4.4500 38 1 3.4263 -0.5801 6.0764 39 1 4.8769 -1.2857 5.3239 40 1 5.5987 -1.4076 8.9329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385309027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = -107.423689 kcal Electronic energy + Delta-G solvation = -19554.746893 eV Core-core repulsion = 16561.611113 eV Total energy + Delta-G solvation = -2993.135780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23600 -38.61370 -36.36273 -35.11849 -32.99064 -31.54091 -31.22947 -27.89120 -26.55656 -24.50489 -23.64736 -22.20981 -21.03374 -19.92965 -19.69734 -18.12512 -16.97262 -16.30643 -15.90014 -15.41539 -15.25456 -14.72134 -14.42580 -13.90960 -13.54359 -13.01357 -12.86930 -12.68397 -12.56561 -12.23169 -12.06043 -11.74090 -11.53051 -11.50115 -11.31610 -11.22239 -10.94760 -10.87210 -10.58595 -10.50404 -10.41701 -10.38980 -9.61277 -9.25199 -9.00436 -8.50907 -8.30901 -5.96131 -3.98400 1.97469 2.80116 3.35265 3.39417 3.42030 3.76904 4.26011 4.40331 4.49017 4.58161 4.94470 5.08787 5.22618 5.28178 5.39286 5.43444 5.50257 5.53500 5.59190 5.69961 5.71707 5.88199 5.90086 5.95109 6.08693 6.13697 6.20495 6.34247 6.49401 6.77304 6.84841 6.92497 6.99568 7.21441 7.71412 7.72188 7.88299 8.04675 8.47526 9.08683 9.65307 11.15189 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032709 B = 0.004105 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.826356 B = 6818.601989 C = 7221.451505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.108 3.892 3 C 0.474 3.526 4 O -0.512 6.512 5 O -0.513 6.513 6 C -0.133 4.133 7 C -0.126 4.126 8 C 0.039 3.961 9 N -0.504 5.504 10 C 0.034 3.966 11 C -0.109 4.109 12 C -0.109 4.109 13 C 0.022 3.978 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.407 0.593 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 -0.531 -20.648 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.017 3.983 3 C 0.315 3.685 4 O -0.398 6.398 5 O -0.326 6.326 6 C -0.171 4.171 7 C -0.164 4.164 8 C -0.088 4.088 9 N -0.230 5.230 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.147 4.147 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.266 0.734 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.392 -0.964 -20.171 21.504 hybrid contribution 1.509 1.609 0.334 2.232 sum -5.883 0.646 -19.837 20.701 Atomic orbital electron populations 1.21629 0.90144 1.02797 1.02905 1.21998 0.97693 0.85662 0.92951 1.23997 0.79995 0.93114 0.71389 1.90711 1.57620 1.46339 1.45114 1.84657 1.26442 1.36528 1.84936 1.22915 1.02007 0.96167 0.96013 1.22717 1.01948 0.95892 0.95798 1.23179 0.96023 0.94302 0.95334 1.63969 1.37547 1.08473 1.13035 1.22817 0.96383 0.95160 0.94954 1.21618 1.00569 0.98990 0.93547 1.21603 0.97218 0.98114 0.97795 1.19078 0.96505 0.95512 0.90385 1.21249 1.30764 1.02091 1.01815 0.92867 1.25020 0.96441 0.95102 0.97872 1.69953 1.45719 1.18152 1.19729 0.86677 0.81007 0.80725 0.79693 1.20266 1.21280 1.20295 0.91227 0.91999 0.90679 0.73370 0.90154 0.89898 0.90264 0.90278 0.92603 0.89234 0.91557 0.92348 0.91713 0.92263 0.93624 0.93604 0.96600 0.96686 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.02 37.15 0.30 -0.95 16 2 C 0.11 1.23 1.10 -131.77 -0.14 1.09 16 3 C 0.47 6.04 4.92 36.01 0.18 6.22 16 4 O -0.51 -7.85 16.81 -18.75 -0.32 -8.16 16 5 O -0.51 -5.47 10.62 -39.26 -0.42 -5.89 16 6 C -0.13 -1.17 5.97 -24.90 -0.15 -1.32 16 7 C -0.13 -1.04 7.08 -24.59 -0.17 -1.22 16 8 C 0.04 0.43 5.63 -2.30 -0.01 0.42 16 9 N -0.50 -6.54 4.80 -217.08 -1.04 -7.58 16 10 C 0.03 0.51 3.61 -3.82 -0.01 0.49 16 11 C -0.11 -1.92 5.29 -26.73 -0.14 -2.06 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.41 2.81 9.10 45.56 0.41 3.23 16 26 H 0.08 0.71 7.38 -51.93 -0.38 0.33 16 27 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 32 H 0.07 1.07 7.07 -51.93 -0.37 0.71 16 33 H 0.06 0.87 5.96 -51.93 -0.31 0.56 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.02 7.30 -51.93 -0.38 0.64 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -33.02 320.54 -8.09 -41.12 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.02 Total: -1.45 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.85 Total: -13.18 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: -0.31 Total: -34.23 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.73 Total: -14.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.02 -8.09 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385309027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.309 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds