Wall clock time and date at job start Mon Mar 30 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50702 * 110.01397 * 2 1 4 4 O 1.20829 * 119.99708 * 5.58065 * 3 2 1 5 5 O 1.34231 * 120.00155 * 185.58345 * 3 2 1 6 6 C 1.54320 * 109.88753 * 238.88457 * 2 1 3 7 7 C 1.55148 * 103.02039 * 262.87880 * 6 2 1 8 8 C 1.54911 * 101.64933 * 324.34663 * 7 6 2 9 9 N 1.47449 * 109.88998 * 121.11631 * 2 1 3 10 10 C 1.46899 * 110.99665 * 242.66301 * 9 2 1 11 11 C 1.53000 * 109.46702 * 171.90327 * 10 9 2 12 12 C 1.52999 * 109.47132 * 176.06289 * 11 10 9 13 13 C 1.53000 * 109.47132 * 179.97438 * 12 11 10 14 14 C 1.50708 * 109.46963 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00182 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99515 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00495 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 59.99730 * 18 16 14 20 20 H 1.48502 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47014 * 299.99591 * 18 16 14 22 22 H 1.08997 * 109.47355 * 298.88801 * 1 2 3 23 23 H 1.09006 * 109.47073 * 58.88330 * 1 2 3 24 24 H 1.08993 * 109.47592 * 178.88465 * 1 2 3 25 25 H 0.96703 * 116.99729 * 180.02562 * 5 3 2 26 26 H 1.09003 * 110.70799 * 144.50004 * 6 2 1 27 27 H 1.08991 * 110.85995 * 21.32904 * 6 2 1 28 28 H 1.08998 * 110.99400 * 206.25930 * 7 6 2 29 29 H 1.08999 * 110.98757 * 82.43560 * 7 6 2 30 30 H 1.08996 * 110.37335 * 278.23774 * 8 7 6 31 31 H 1.09001 * 110.46735 * 155.94782 * 8 7 6 32 32 H 1.08994 * 109.47631 * 51.90451 * 10 9 2 33 33 H 1.09001 * 109.47103 * 291.90043 * 10 9 2 34 34 H 1.09007 * 109.47306 * 296.06162 * 11 10 9 35 35 H 1.09006 * 109.47135 * 56.06316 * 11 10 9 36 36 H 1.08998 * 109.46796 * 299.99823 * 12 11 10 37 37 H 1.08996 * 109.47134 * 59.99864 * 12 11 10 38 38 H 1.08993 * 109.47332 * 300.00027 * 13 12 11 39 39 H 1.09006 * 109.47135 * 60.00027 * 13 12 11 40 40 H 0.97003 * 120.00608 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0457 1.4160 0.0000 4 8 1.2738 2.3401 0.1018 5 8 3.3625 1.6507 -0.1131 6 6 2.0549 -0.7499 -1.2424 7 6 2.3500 -2.1710 -0.6941 8 6 2.8585 -1.8556 0.7348 9 7 2.0315 -0.7165 1.1870 10 6 2.8029 0.1814 2.0569 11 6 3.1335 -0.5372 3.3666 12 6 4.0194 0.3614 4.2318 13 6 4.3495 -0.3569 5.5417 14 6 5.2227 0.5280 6.3937 15 1 5.5134 1.5049 6.0364 16 6 5.6511 0.0900 7.6288 17 7 5.2976 -1.0996 8.0637 18 14 6.7328 1.1872 8.6851 19 1 6.0142 2.4522 8.9825 20 1 7.0544 0.4894 9.9560 21 1 7.9904 1.4917 7.9564 22 1 -0.3634 0.4964 0.8997 23 1 -0.3633 0.5311 -0.8798 24 1 -0.3634 -1.0274 -0.0200 25 1 3.6456 2.5753 -0.1078 26 1 2.9665 -0.2844 -1.6169 27 1 1.2947 -0.7881 -2.0226 28 1 3.1229 -2.6642 -1.2835 29 1 1.4420 -2.7731 -0.6614 30 1 3.9111 -1.5739 0.7094 31 1 2.7120 -2.7145 1.3897 32 1 2.2149 1.0739 2.2707 33 1 3.7277 0.4670 1.5557 34 1 2.2104 -0.7608 3.9015 35 1 3.6610 -1.4658 3.1484 36 1 4.9424 0.5849 3.6969 37 1 3.4919 1.2900 4.4500 38 1 3.4263 -0.5801 6.0764 39 1 4.8769 -1.2857 5.3239 40 1 5.5987 -1.4076 8.9329 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385309027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:41 Heat of formation + Delta-G solvation = -129.642901 kcal Electronic energy + Delta-G solvation = -19555.710390 eV Core-core repulsion = 16561.611113 eV Total energy + Delta-G solvation = -2994.099277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.18506 -39.56858 -37.32580 -36.74082 -34.83320 -32.80440 -32.34371 -29.55654 -27.43988 -26.24087 -24.61273 -23.49966 -22.35515 -21.44385 -20.63557 -19.10230 -18.44128 -17.93961 -16.95900 -16.58353 -16.50323 -16.21526 -15.79040 -15.05495 -14.57551 -14.51559 -14.14741 -13.84608 -13.71977 -13.49147 -13.26297 -13.02857 -12.87189 -12.70305 -12.65582 -12.54144 -12.25872 -12.16288 -12.03951 -11.91152 -11.60938 -11.48033 -11.37194 -11.32889 -11.02008 -10.55574 -9.51668 -8.20207 -6.31891 0.99950 1.39009 1.42369 1.50374 1.95124 2.40403 2.78472 3.12437 3.46780 3.61057 3.74923 4.01544 4.14313 4.23286 4.29244 4.46105 4.48828 4.54690 4.66338 4.74203 4.77664 4.84729 4.88703 4.94525 5.03576 5.11153 5.16078 5.22771 5.24226 5.29039 5.31774 5.50341 5.52205 5.74775 5.83596 5.87005 5.90300 6.24831 6.84627 6.84779 7.37337 8.91489 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.032709 B = 0.004105 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.826356 B = 6818.601989 C = 7221.451505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.101 3.899 3 C 0.475 3.525 4 O -0.544 6.544 5 O -0.511 6.511 6 C -0.126 4.126 7 C -0.115 4.115 8 C 0.031 3.969 9 N -0.514 5.514 10 C 0.049 3.951 11 C -0.098 4.098 12 C -0.096 4.096 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.266 1.266 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.423 0.577 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.043 0.957 38 H -0.012 1.012 39 H -0.007 1.007 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -0.294 -22.087 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.011 3.989 3 C 0.317 3.683 4 O -0.433 6.433 5 O -0.324 6.324 6 C -0.165 4.165 7 C -0.153 4.153 8 C -0.096 4.096 9 N -0.240 5.240 10 C -0.079 4.079 11 C -0.136 4.136 12 C -0.135 4.135 13 C -0.012 4.012 14 C -0.585 4.585 15 H 0.077 0.923 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.190 1.190 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.285 0.715 26 H 0.099 0.901 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.011 0.989 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.821 -0.722 -21.633 22.694 hybrid contribution 1.340 1.512 0.786 2.168 sum -5.481 0.790 -20.846 21.569 Atomic orbital electron populations 1.21634 0.89733 1.03646 1.02230 1.22170 0.98051 0.85167 0.93559 1.24292 0.80210 0.93355 0.70448 1.90698 1.58457 1.47395 1.46738 1.84613 1.25421 1.38086 1.84311 1.22939 1.02609 0.95770 0.95142 1.22713 1.02945 0.95848 0.93745 1.23280 0.95579 0.93377 0.97323 1.63902 1.37538 1.08618 1.13966 1.22514 0.96656 0.94624 0.94077 1.21427 0.99231 0.98627 0.94338 1.21400 0.98245 0.97978 0.95830 1.18993 0.94628 0.94960 0.92618 1.21697 1.31400 1.02680 1.02738 0.92345 1.25991 0.97849 0.96606 0.99347 1.70089 1.46872 1.20033 1.20334 0.85503 0.79156 0.78700 0.77700 1.19313 1.20650 1.19031 0.93603 0.90926 0.89075 0.71537 0.90057 0.87673 0.88303 0.89170 0.93205 0.89592 0.92936 0.91885 0.92841 0.91922 0.92909 0.93783 0.99329 0.98854 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.02 71.98 0.58 -1.72 16 2 C 0.10 2.15 1.10 3.12 0.00 2.16 16 3 C 0.47 11.60 4.92 71.24 0.35 11.95 16 4 O -0.54 -16.51 16.81 21.95 0.37 -16.14 16 5 O -0.51 -10.14 10.62 -51.43 -0.55 -10.68 16 6 C -0.13 -1.85 5.97 31.78 0.19 -1.66 16 7 C -0.11 -1.55 7.08 31.98 0.23 -1.33 16 8 C 0.03 0.65 5.63 86.77 0.49 1.14 16 9 N -0.51 -12.79 4.80 -840.70 -4.04 -16.83 16 10 C 0.05 1.44 3.61 86.30 0.31 1.76 16 11 C -0.10 -3.49 5.29 30.59 0.16 -3.32 16 12 C -0.10 -4.12 5.15 30.59 0.16 -3.96 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 17 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 18 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H 0.04 1.12 8.09 -2.39 -0.02 1.10 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.42 5.26 9.10 -74.06 -0.67 4.59 16 26 H 0.08 1.20 7.38 -2.39 -0.02 1.18 16 27 H 0.10 1.11 7.84 -2.39 -0.02 1.09 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 31 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 32 H 0.05 1.70 7.07 -2.39 -0.02 1.68 16 33 H 0.06 1.80 5.96 -2.39 -0.01 1.79 16 34 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.06 2.17 7.30 -2.38 -0.02 2.15 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.47 320.54 1.74 -69.72 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.34 Total: 9.43 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.31 Total: -24.87 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -3.75 Total: -74.44 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.18 Total: -26.82 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.47 1.74 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385309027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.919 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds