Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99819 * 2 1 4 4 H 1.48504 * 109.47170 * 269.99511 * 3 2 1 5 5 H 1.48495 * 109.47409 * 30.00119 * 3 2 1 6 6 H 1.48504 * 109.47078 * 149.99875 * 3 2 1 7 7 C 1.37876 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99711 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47128 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46747 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46832 * 180.02562 * 12 11 10 14 14 C 1.47451 * 110.99721 * 75.43700 * 13 12 11 15 15 C 1.54322 * 107.23232 * 123.26047 * 14 13 12 16 16 C 1.55145 * 103.01873 * 22.27654 * 15 14 13 17 17 C 1.47848 * 111.00016 * 196.27794 * 13 12 11 18 18 H 1.08994 * 110.37018 * 332.46710 * 17 13 12 19 19 C 1.52995 * 110.36888 * 94.80949 * 17 13 12 20 20 C 1.50707 * 109.46827 * 185.73582 * 19 17 13 21 21 O 1.20827 * 119.99654 * 5.97898 * 20 19 17 22 22 O 1.34229 * 120.00121 * 185.97658 * 20 19 17 23 23 H 0.96998 * 120.00060 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47398 * 60.00510 * 9 7 2 25 25 H 1.08992 * 109.47427 * 299.99856 * 9 7 2 26 26 H 1.09001 * 109.46544 * 59.99774 * 10 9 7 27 27 H 1.08992 * 109.47210 * 300.00408 * 10 9 7 28 28 H 1.08996 * 109.46877 * 300.00262 * 11 10 9 29 29 H 1.09000 * 109.46722 * 60.00798 * 11 10 9 30 30 H 1.08997 * 109.46932 * 299.99909 * 12 11 10 31 31 H 1.09002 * 109.47421 * 60.00274 * 12 11 10 32 32 H 1.09002 * 109.88287 * 242.65756 * 14 13 12 33 33 H 1.08994 * 109.88807 * 3.69139 * 14 13 12 34 34 H 1.08996 * 110.70755 * 140.66258 * 15 14 13 35 35 H 1.09004 * 110.70116 * 263.72714 * 15 14 13 36 36 H 1.09006 * 110.98505 * 82.44337 * 16 15 14 37 37 H 1.09002 * 110.99225 * 206.25409 * 16 15 14 38 38 H 1.08999 * 109.47381 * 305.73328 * 19 17 13 39 39 H 1.08995 * 109.47782 * 65.73977 * 19 17 13 40 40 H 0.96698 * 116.99817 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0022 12 6 6.0614 -4.0792 0.0028 13 7 7.5304 -4.0792 0.0033 14 6 8.0583 -3.7328 1.3358 15 6 8.9766 -4.8911 1.7791 16 6 9.3659 -5.5622 0.4356 17 6 8.0604 -5.4042 -0.3831 18 1 7.3504 -6.1882 -0.1201 19 6 8.3641 -5.4398 -1.8822 20 6 8.7681 -6.8362 -2.2798 21 8 8.7053 -7.7354 -1.4752 22 8 9.1976 -7.0809 -3.5277 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 3.6584 -3.1510 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.9147 -2.1235 -0.8881 29 1 5.9148 -2.1222 0.8919 30 1 5.6981 -4.5926 0.8929 31 1 5.6981 -4.5934 -0.8870 32 1 8.6307 -2.8069 1.2786 33 1 7.2359 -3.6173 2.0418 34 1 9.8606 -4.5085 2.2892 35 1 8.4357 -5.5885 2.4188 36 1 10.1916 -5.0331 -0.0403 37 1 9.6107 -6.6144 0.5811 38 1 7.4750 -5.1461 -2.4401 39 1 9.1774 -4.7491 -2.1047 40 1 9.4452 -7.9922 -3.7360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385326613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -113.231237 kcal Electronic energy + Delta-G solvation = -18824.725732 eV Core-core repulsion = 15831.338118 eV Total energy + Delta-G solvation = -2993.387614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67588 -39.14800 -36.40530 -35.12849 -32.86367 -32.08598 -31.29383 -28.26872 -26.99793 -24.60125 -22.36770 -21.99068 -20.62612 -20.05669 -19.79027 -18.32567 -17.12708 -16.61199 -16.20107 -15.76268 -15.62231 -14.68997 -14.25085 -13.92261 -13.73290 -13.35549 -13.06810 -12.86956 -12.59696 -12.44522 -11.93695 -11.80813 -11.70039 -11.49737 -11.27506 -11.07294 -11.00866 -10.83683 -10.78591 -10.73695 -10.43970 -9.85553 -9.64719 -9.45821 -9.12159 -8.50030 -8.41217 -6.00762 -3.98286 1.95046 2.70249 3.33757 3.40770 3.45390 3.95505 4.36639 4.40474 4.48900 4.74154 4.89236 4.99981 5.14469 5.20155 5.30062 5.33913 5.42502 5.45149 5.50450 5.66240 5.74576 5.80261 5.84302 5.88322 6.02489 6.08052 6.14227 6.22968 6.41811 6.67663 6.80349 6.90481 6.94959 7.12297 7.37622 7.50514 7.62152 7.84646 8.58632 9.04625 9.62307 11.12907 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.003621 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.629592 B = 7731.142268 C = 8203.159011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.102 4.102 11 C -0.113 4.113 12 C 0.050 3.950 13 N -0.528 5.528 14 C 0.044 3.956 15 C -0.142 4.142 16 C -0.125 4.125 17 C 0.081 3.919 18 H 0.068 0.932 19 C -0.100 4.100 20 C 0.481 3.519 21 O -0.517 6.517 22 O -0.518 6.518 23 H 0.262 0.738 24 H 0.014 0.986 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.874 -12.237 -2.108 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.141 4.141 11 C -0.151 4.151 12 C -0.077 4.077 13 N -0.252 5.252 14 C -0.084 4.084 15 C -0.180 4.180 16 C -0.163 4.163 17 C -0.028 4.028 18 H 0.086 0.914 19 C -0.138 4.138 20 C 0.323 3.677 21 O -0.406 6.406 22 O -0.330 6.330 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 21.733 -11.576 -2.141 24.717 hybrid contribution 0.122 -0.284 0.385 0.493 sum 21.856 -11.859 -1.757 24.928 Atomic orbital electron populations 1.69925 1.06325 1.26816 1.51478 1.25055 0.94739 0.99232 0.94648 0.86753 0.80348 0.83545 0.78496 1.20305 1.21481 1.18989 1.21198 0.89738 0.94381 1.50451 0.91163 1.19560 0.96889 0.92482 0.96141 1.21437 0.91977 0.99782 1.00866 1.21655 0.97041 0.94334 1.02064 1.22441 0.85701 0.98868 1.00726 1.63334 1.08817 1.26343 1.26687 1.22837 0.98112 0.98335 0.89091 1.22784 0.99991 0.97865 0.97397 1.22776 0.96736 1.01369 0.95388 1.22281 0.96879 0.91337 0.92277 0.91409 1.21261 1.04984 0.90015 0.97565 1.23580 0.72809 0.92249 0.79034 1.90717 1.50534 1.47401 1.51901 1.84557 1.77541 1.37968 1.32905 0.92818 0.96787 0.97077 0.92921 0.93099 0.91699 0.92607 0.94479 0.91160 0.90394 0.92086 0.90759 0.91461 0.90850 0.90308 0.87054 0.87076 0.73270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 11 C -0.11 -1.80 5.33 -26.73 -0.14 -1.94 16 12 C 0.05 0.67 4.58 -3.82 -0.02 0.66 16 13 N -0.53 -6.24 4.77 -223.38 -1.07 -7.30 16 14 C 0.04 0.48 6.30 -2.83 -0.02 0.46 16 15 C -0.14 -1.30 6.94 -24.90 -0.17 -1.48 16 16 C -0.12 -1.17 5.94 -24.59 -0.15 -1.32 16 17 C 0.08 0.85 1.96 -66.19 -0.13 0.72 16 18 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 19 C -0.10 -0.90 5.64 -27.88 -0.16 -1.06 16 20 C 0.48 4.55 8.09 36.01 0.29 4.84 16 21 O -0.52 -6.30 15.72 -18.75 -0.29 -6.60 16 22 O -0.52 -3.78 13.42 -39.25 -0.53 -4.30 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 30 H 0.04 0.50 7.78 -51.93 -0.40 0.10 16 31 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.70 7.16 -51.93 -0.37 0.33 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 7.96 -51.93 -0.41 0.22 16 37 H 0.08 0.78 7.53 -51.93 -0.39 0.39 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.11 0.88 8.01 -51.93 -0.42 0.47 16 40 H 0.41 1.29 9.10 45.56 0.41 1.71 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -33.22 323.81 -8.16 -41.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.09 Total: -2.47 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -1.17 Total: -15.37 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.29 Total: -34.94 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.82 Total: -10.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.22 -8.16 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.847 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds