Wall clock time and date at job start Mon Mar 30 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99819 * 2 1 4 4 H 1.48504 * 109.47170 * 269.99511 * 3 2 1 5 5 H 1.48495 * 109.47409 * 30.00119 * 3 2 1 6 6 H 1.48504 * 109.47078 * 149.99875 * 3 2 1 7 7 C 1.37876 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99711 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47128 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46747 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46832 * 180.02562 * 12 11 10 14 14 C 1.47451 * 110.99721 * 75.43700 * 13 12 11 15 15 C 1.54322 * 107.23232 * 123.26047 * 14 13 12 16 16 C 1.55145 * 103.01873 * 22.27654 * 15 14 13 17 17 C 1.47848 * 111.00016 * 196.27794 * 13 12 11 18 18 H 1.08994 * 110.37018 * 332.46710 * 17 13 12 19 19 C 1.52995 * 110.36888 * 94.80949 * 17 13 12 20 20 C 1.50707 * 109.46827 * 185.73582 * 19 17 13 21 21 O 1.20827 * 119.99654 * 5.97898 * 20 19 17 22 22 O 1.34229 * 120.00121 * 185.97658 * 20 19 17 23 23 H 0.96998 * 120.00060 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47398 * 60.00510 * 9 7 2 25 25 H 1.08992 * 109.47427 * 299.99856 * 9 7 2 26 26 H 1.09001 * 109.46544 * 59.99774 * 10 9 7 27 27 H 1.08992 * 109.47210 * 300.00408 * 10 9 7 28 28 H 1.08996 * 109.46877 * 300.00262 * 11 10 9 29 29 H 1.09000 * 109.46722 * 60.00798 * 11 10 9 30 30 H 1.08997 * 109.46932 * 299.99909 * 12 11 10 31 31 H 1.09002 * 109.47421 * 60.00274 * 12 11 10 32 32 H 1.09002 * 109.88287 * 242.65756 * 14 13 12 33 33 H 1.08994 * 109.88807 * 3.69139 * 14 13 12 34 34 H 1.08996 * 110.70755 * 140.66258 * 15 14 13 35 35 H 1.09004 * 110.70116 * 263.72714 * 15 14 13 36 36 H 1.09006 * 110.98505 * 82.44337 * 16 15 14 37 37 H 1.09002 * 110.99225 * 206.25409 * 16 15 14 38 38 H 1.08999 * 109.47381 * 305.73328 * 19 17 13 39 39 H 1.08995 * 109.47782 * 65.73977 * 19 17 13 40 40 H 0.96698 * 116.99817 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6366 0.0022 12 6 6.0614 -4.0792 0.0028 13 7 7.5304 -4.0792 0.0033 14 6 8.0583 -3.7328 1.3358 15 6 8.9766 -4.8911 1.7791 16 6 9.3659 -5.5622 0.4356 17 6 8.0604 -5.4042 -0.3831 18 1 7.3504 -6.1882 -0.1201 19 6 8.3641 -5.4398 -1.8822 20 6 8.7681 -6.8362 -2.2798 21 8 8.7053 -7.7354 -1.4752 22 8 9.1976 -7.0809 -3.5277 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6805 -0.8888 26 1 3.6584 -3.1510 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.9147 -2.1235 -0.8881 29 1 5.9148 -2.1222 0.8919 30 1 5.6981 -4.5926 0.8929 31 1 5.6981 -4.5934 -0.8870 32 1 8.6307 -2.8069 1.2786 33 1 7.2359 -3.6173 2.0418 34 1 9.8606 -4.5085 2.2892 35 1 8.4357 -5.5885 2.4188 36 1 10.1916 -5.0331 -0.0403 37 1 9.6107 -6.6144 0.5811 38 1 7.4750 -5.1461 -2.4401 39 1 9.1774 -4.7491 -2.1047 40 1 9.4452 -7.9922 -3.7360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385326613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:01 Heat of formation + Delta-G solvation = -135.939568 kcal Electronic energy + Delta-G solvation = -18825.710439 eV Core-core repulsion = 15831.338118 eV Total energy + Delta-G solvation = -2994.372321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42181 -39.99106 -37.12282 -36.64413 -34.70280 -32.95867 -32.70111 -29.82826 -27.76625 -26.20683 -23.43067 -22.94041 -22.00664 -21.27792 -20.75356 -19.03281 -18.82980 -17.90360 -16.92669 -16.66142 -16.58636 -16.27341 -15.88926 -14.83417 -14.75148 -14.65665 -14.37987 -14.08232 -13.89372 -13.43611 -13.23793 -13.18437 -12.84042 -12.56232 -12.49412 -12.30663 -12.03781 -11.90598 -11.81448 -11.73389 -11.59941 -11.54765 -11.35477 -11.26425 -11.12760 -10.75153 -9.34658 -8.28690 -6.32878 1.23356 1.37234 1.39208 1.51820 2.05631 2.37828 3.06764 3.08231 3.60529 3.62058 3.95562 4.10247 4.15332 4.23851 4.28746 4.42549 4.50052 4.56051 4.59255 4.73174 4.73698 4.79439 4.90084 4.95979 4.99915 5.06336 5.12420 5.16843 5.20955 5.29349 5.34160 5.60228 5.64805 5.66606 5.70142 6.02125 6.09845 6.30477 6.75631 7.02595 7.32034 8.88411 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.003621 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.629592 B = 7731.142268 C = 8203.159011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.011 4.011 10 C -0.096 4.096 11 C -0.099 4.099 12 C 0.057 3.943 13 N -0.528 5.528 14 C 0.039 3.961 15 C -0.137 4.137 16 C -0.119 4.119 17 C 0.079 3.921 18 H 0.050 0.950 19 C -0.098 4.098 20 C 0.488 3.512 21 O -0.549 6.549 22 O -0.514 6.514 23 H 0.266 0.734 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.614 -11.380 -2.519 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.049 4.049 10 C -0.134 4.134 11 C -0.137 4.137 12 C -0.071 4.071 13 N -0.252 5.252 14 C -0.088 4.088 15 C -0.175 4.175 16 C -0.157 4.157 17 C -0.029 4.029 18 H 0.068 0.932 19 C -0.136 4.136 20 C 0.332 3.668 21 O -0.440 6.440 22 O -0.327 6.327 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 24.499 -10.747 -2.573 26.876 hybrid contribution -0.792 -0.649 0.479 1.130 sum 23.707 -11.396 -2.094 26.387 Atomic orbital electron populations 1.70084 1.08402 1.28180 1.52865 1.26097 0.95672 1.03785 0.94096 0.85587 0.79450 0.77871 0.79310 1.18990 1.20998 1.16893 1.21583 0.92507 0.92992 1.50243 0.95331 1.19529 0.93490 0.95419 0.96428 1.21313 0.94919 0.96881 1.00335 1.21456 0.93789 0.96119 1.02343 1.22257 0.87045 0.97045 1.00727 1.63329 1.07473 1.27068 1.27358 1.22912 0.98186 0.99282 0.88462 1.22764 1.00272 0.97149 0.97358 1.22742 0.96438 1.01208 0.95334 1.22284 0.96989 0.90037 0.93575 0.93211 1.21240 1.05682 0.90236 0.96448 1.23579 0.72079 0.91973 0.79181 1.90714 1.52069 1.48336 1.52918 1.84512 1.76939 1.39681 1.31602 0.92524 0.96385 0.96251 0.93386 0.93879 0.91320 0.92306 0.94982 0.90863 0.89689 0.92971 0.88993 0.91892 0.89585 0.90884 0.86812 0.85488 0.71137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.45 16 3 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.76 5.15 30.60 0.16 -3.60 16 11 C -0.10 -2.99 5.33 30.60 0.16 -2.82 16 12 C 0.06 1.46 4.58 86.30 0.40 1.86 16 13 N -0.53 -11.51 4.77 -860.64 -4.11 -15.62 16 14 C 0.04 0.77 6.30 86.65 0.55 1.32 16 15 C -0.14 -2.25 6.94 31.78 0.22 -2.03 16 16 C -0.12 -2.01 5.94 31.98 0.19 -1.82 16 17 C 0.08 1.56 1.96 45.38 0.09 1.65 16 18 H 0.05 1.16 7.46 -2.39 -0.02 1.15 16 19 C -0.10 -1.58 5.64 29.85 0.17 -1.41 16 20 C 0.49 8.47 8.09 71.24 0.58 9.04 16 21 O -0.55 -12.91 15.72 21.96 0.35 -12.57 16 22 O -0.51 -6.40 13.42 -51.41 -0.69 -7.09 16 23 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 25 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.74 7.54 -2.39 -0.02 1.73 16 30 H 0.03 0.85 7.78 -2.39 -0.02 0.83 16 31 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.12 7.16 -2.39 -0.02 1.11 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.09 1.24 7.96 -2.38 -0.02 1.22 16 37 H 0.07 1.35 7.53 -2.39 -0.02 1.33 16 38 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.13 1.65 8.01 -2.39 -0.02 1.64 16 40 H 0.43 1.82 9.10 -74.06 -0.67 1.14 16 Total: -1.00 -71.86 323.81 1.35 -70.51 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.28 Total: 8.07 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.34 Total: -29.29 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -3.81 Total: -76.45 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.34 Total: -19.66 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -71.86 1.35 -70.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.429 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds