Wall clock time and date at job start Mon Mar 30 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47334 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.47239 * 29.99641 * 3 2 1 6 6 H 1.48494 * 109.47400 * 149.99863 * 3 2 1 7 7 C 1.37878 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46793 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46811 * 180.02562 * 12 11 10 14 14 C 1.48558 * 111.00085 * 279.72504 * 13 12 11 15 15 C 1.54379 * 104.59689 * 200.96336 * 14 13 12 16 16 C 1.54252 * 105.05989 * 23.85059 * 15 14 13 17 17 C 1.48556 * 110.99794 * 164.30519 * 13 12 11 18 18 H 1.09004 * 110.41054 * 40.14785 * 17 13 12 19 19 C 1.52995 * 110.41685 * 277.81982 * 17 13 12 20 20 C 1.50696 * 109.47517 * 174.25906 * 19 17 13 21 21 O 1.20828 * 119.99931 * 3.78464 * 20 19 17 22 22 O 1.34234 * 120.00132 * 183.79123 * 20 19 17 23 23 H 0.96993 * 120.00208 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46791 * 60.00424 * 9 7 2 25 25 H 1.09000 * 109.47577 * 300.00517 * 9 7 2 26 26 H 1.09006 * 109.46949 * 60.00680 * 10 9 7 27 27 H 1.08992 * 109.47303 * 300.00644 * 10 9 7 28 28 H 1.08989 * 109.47185 * 300.00467 * 11 10 9 29 29 H 1.08997 * 109.46913 * 60.00580 * 11 10 9 30 30 H 1.09005 * 109.47013 * 300.00129 * 12 11 10 31 31 H 1.08997 * 109.47196 * 60.00412 * 12 11 10 32 32 H 1.09001 * 110.41401 * 319.74285 * 14 13 12 33 33 H 1.09005 * 110.41125 * 82.17789 * 14 13 12 34 34 H 1.09008 * 110.31969 * 264.95571 * 15 14 13 35 35 H 1.09001 * 110.41144 * 142.79322 * 15 14 13 36 36 H 1.09002 * 110.32690 * 241.10886 * 16 15 14 37 37 H 1.09000 * 110.32588 * 118.89698 * 16 15 14 38 38 H 1.09004 * 109.46670 * 294.25644 * 19 17 13 39 39 H 1.08994 * 109.47320 * 54.24882 * 19 17 13 40 40 H 0.96700 * 117.00103 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6619 -0.0018 11 6 1.4806 -4.9871 -0.0012 12 6 2.4750 -6.1499 -0.0018 13 7 1.7405 -7.4221 -0.0018 14 6 1.2720 -7.7664 1.3653 15 6 1.0274 -9.2900 1.3205 16 6 1.9211 -9.8059 0.1740 17 6 2.6306 -8.5506 -0.3776 18 1 3.6107 -8.4319 0.0845 19 6 2.7664 -8.6395 -1.8989 20 6 3.7803 -9.6970 -2.2519 21 8 4.2868 -10.3632 -1.3803 22 8 4.1209 -9.8988 -3.5345 23 1 -0.4850 0.8400 -0.0004 24 1 0.6243 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8728 -3.6046 0.8878 27 1 2.8716 -3.6037 -0.8921 28 1 0.8549 -5.0449 0.8894 29 1 0.8530 -5.0447 -0.8905 30 1 3.1010 -6.0921 -0.8923 31 1 3.1022 -6.0921 0.8877 32 1 2.0387 -7.5260 2.1017 33 1 0.3457 -7.2391 1.5937 34 1 -0.0209 -9.4990 1.1068 35 1 1.3196 -9.7498 2.2646 36 1 1.3116 -10.2682 -0.6025 37 1 2.6532 -10.5176 0.5556 38 1 1.8022 -8.9007 -2.3350 39 1 3.0937 -7.6768 -2.2914 40 1 4.7758 -10.5879 -3.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385326615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:04 Heat of formation + Delta-G solvation = -116.050457 kcal Electronic energy + Delta-G solvation = -18777.441374 eV Core-core repulsion = 15783.931510 eV Total energy + Delta-G solvation = -2993.509865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65563 -39.04660 -36.37776 -35.00697 -32.89926 -32.06830 -31.14696 -27.86578 -26.87170 -24.54305 -22.38679 -21.88837 -20.66900 -20.23441 -19.71953 -18.31629 -16.94429 -16.22063 -16.14901 -15.62802 -15.45314 -14.89537 -14.42664 -14.06727 -13.58818 -13.26609 -13.06807 -12.57063 -12.47457 -12.21685 -11.83359 -11.76099 -11.51170 -11.33762 -11.30950 -11.01026 -10.92768 -10.78981 -10.62310 -10.46228 -10.43262 -10.33183 -9.59714 -9.24361 -8.98785 -8.51106 -8.30831 -5.96041 -3.98216 1.96809 2.73179 3.33868 3.39938 3.43405 4.02670 4.42621 4.43380 4.49555 4.82442 4.95655 5.00539 5.19281 5.22930 5.37373 5.39664 5.43997 5.52645 5.56503 5.74889 5.81338 5.87549 5.92678 5.99152 6.03853 6.16104 6.23559 6.26882 6.54141 6.77834 6.91397 6.99028 7.05616 7.24977 7.64076 7.73214 7.89335 8.05287 8.48065 9.09390 9.65566 11.15289 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.003480 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.447559 B = 8042.903994 C = 8713.851364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.108 4.108 12 C 0.042 3.958 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.125 4.125 16 C -0.115 4.115 17 C 0.071 3.929 18 H 0.061 0.939 19 C -0.102 4.102 20 C 0.481 3.519 21 O -0.516 6.516 22 O -0.518 6.518 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -21.573 -2.458 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.085 4.085 13 N -0.231 5.231 14 C -0.093 4.093 15 C -0.164 4.164 16 C -0.154 4.154 17 C -0.037 4.037 18 H 0.079 0.921 19 C -0.140 4.140 20 C 0.323 3.677 21 O -0.405 6.405 22 O -0.329 6.329 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.064 -21.250 -2.502 21.780 hybrid contribution 1.602 0.523 0.401 1.732 sum 5.666 -20.727 -2.102 21.590 Atomic orbital electron populations 1.69968 1.06035 1.26502 1.51051 1.25032 0.94840 0.99208 0.95443 0.86617 0.79846 0.83591 0.78074 1.20685 1.21252 1.19931 1.21295 0.93004 0.91246 1.50296 0.92806 1.19083 0.94012 0.91297 0.97162 1.21614 0.99112 0.94116 0.99990 1.21575 0.97704 0.93201 1.02141 1.22476 0.96158 0.89266 1.00644 1.65254 1.33380 1.01287 1.23144 1.23126 1.00984 0.95588 0.89592 1.22317 1.00469 0.95124 0.98440 1.22336 0.98388 0.96499 0.98135 1.22374 0.96412 0.92307 0.92639 0.92089 1.21290 0.97965 0.97237 0.97523 1.23551 0.81194 0.83209 0.79720 1.90714 1.52984 1.47391 1.49374 1.84562 1.60185 1.58396 1.29788 0.93059 0.96606 0.96725 0.93745 0.93531 0.92617 0.91684 0.91258 0.94475 0.93667 0.89568 0.90993 0.91479 0.91402 0.90724 0.86656 0.87297 0.73273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.84 5.39 -26.72 -0.14 -1.99 16 12 C 0.04 0.59 4.82 -3.82 -0.02 0.57 16 13 N -0.51 -6.34 4.98 -222.14 -1.11 -7.45 16 14 C 0.03 0.40 6.12 -2.18 -0.01 0.39 16 15 C -0.13 -1.21 7.00 -25.35 -0.18 -1.39 16 16 C -0.12 -1.16 5.70 -25.35 -0.14 -1.31 16 17 C 0.07 0.79 1.85 -66.07 -0.12 0.66 16 18 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 19 C -0.10 -0.98 5.47 -27.89 -0.15 -1.13 16 20 C 0.48 4.71 8.17 36.00 0.29 5.01 16 21 O -0.52 -6.38 15.69 -18.75 -0.29 -6.67 16 22 O -0.52 -3.97 13.42 -39.27 -0.53 -4.50 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.96 7.79 -51.94 -0.40 0.56 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.92 7.02 -51.93 -0.36 0.55 16 31 H 0.04 0.52 7.64 -51.93 -0.40 0.12 16 32 H 0.05 0.53 7.68 -51.93 -0.40 0.13 16 33 H 0.09 1.02 8.02 -51.93 -0.42 0.60 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 37 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 38 H 0.12 0.99 7.95 -51.93 -0.41 0.58 16 39 H 0.11 1.02 7.18 -51.93 -0.37 0.65 16 40 H 0.41 1.41 9.10 45.56 0.41 1.83 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -32.69 326.11 -8.52 -41.21 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.06 Total: -2.86 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.17 Total: -14.94 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.37 Total: -34.03 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.82 Total: -11.17 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.69 -8.52 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.837 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds