Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47334 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.47239 * 29.99641 * 3 2 1 6 6 H 1.48494 * 109.47400 * 149.99863 * 3 2 1 7 7 C 1.37878 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46846 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46793 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46811 * 180.02562 * 12 11 10 14 14 C 1.48558 * 111.00085 * 279.72504 * 13 12 11 15 15 C 1.54379 * 104.59689 * 200.96336 * 14 13 12 16 16 C 1.54252 * 105.05989 * 23.85059 * 15 14 13 17 17 C 1.48556 * 110.99794 * 164.30519 * 13 12 11 18 18 H 1.09004 * 110.41054 * 40.14785 * 17 13 12 19 19 C 1.52995 * 110.41685 * 277.81982 * 17 13 12 20 20 C 1.50696 * 109.47517 * 174.25906 * 19 17 13 21 21 O 1.20828 * 119.99931 * 3.78464 * 20 19 17 22 22 O 1.34234 * 120.00132 * 183.79123 * 20 19 17 23 23 H 0.96993 * 120.00208 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46791 * 60.00424 * 9 7 2 25 25 H 1.09000 * 109.47577 * 300.00517 * 9 7 2 26 26 H 1.09006 * 109.46949 * 60.00680 * 10 9 7 27 27 H 1.08992 * 109.47303 * 300.00644 * 10 9 7 28 28 H 1.08989 * 109.47185 * 300.00467 * 11 10 9 29 29 H 1.08997 * 109.46913 * 60.00580 * 11 10 9 30 30 H 1.09005 * 109.47013 * 300.00129 * 12 11 10 31 31 H 1.08997 * 109.47196 * 60.00412 * 12 11 10 32 32 H 1.09001 * 110.41401 * 319.74285 * 14 13 12 33 33 H 1.09005 * 110.41125 * 82.17789 * 14 13 12 34 34 H 1.09008 * 110.31969 * 264.95571 * 15 14 13 35 35 H 1.09001 * 110.41144 * 142.79322 * 15 14 13 36 36 H 1.09002 * 110.32690 * 241.10886 * 16 15 14 37 37 H 1.09000 * 110.32588 * 118.89698 * 16 15 14 38 38 H 1.09004 * 109.46670 * 294.25644 * 19 17 13 39 39 H 1.08994 * 109.47320 * 54.24882 * 19 17 13 40 40 H 0.96700 * 117.00103 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6619 -0.0018 11 6 1.4806 -4.9871 -0.0012 12 6 2.4750 -6.1499 -0.0018 13 7 1.7405 -7.4221 -0.0018 14 6 1.2720 -7.7664 1.3653 15 6 1.0274 -9.2900 1.3205 16 6 1.9211 -9.8059 0.1740 17 6 2.6306 -8.5506 -0.3776 18 1 3.6107 -8.4319 0.0845 19 6 2.7664 -8.6395 -1.8989 20 6 3.7803 -9.6970 -2.2519 21 8 4.2868 -10.3632 -1.3803 22 8 4.1209 -9.8988 -3.5345 23 1 -0.4850 0.8400 -0.0004 24 1 0.6243 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8728 -3.6046 0.8878 27 1 2.8716 -3.6037 -0.8921 28 1 0.8549 -5.0449 0.8894 29 1 0.8530 -5.0447 -0.8905 30 1 3.1010 -6.0921 -0.8923 31 1 3.1022 -6.0921 0.8877 32 1 2.0387 -7.5260 2.1017 33 1 0.3457 -7.2391 1.5937 34 1 -0.0209 -9.4990 1.1068 35 1 1.3196 -9.7498 2.2646 36 1 1.3116 -10.2682 -0.6025 37 1 2.6532 -10.5176 0.5556 38 1 1.8022 -8.9007 -2.3350 39 1 3.0937 -7.6768 -2.2914 40 1 4.7758 -10.5879 -3.7117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385326615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = -137.708970 kcal Electronic energy + Delta-G solvation = -18778.380558 eV Core-core repulsion = 15783.931510 eV Total energy + Delta-G solvation = -2994.449048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.43127 -39.94206 -37.12025 -36.61409 -34.72986 -32.88413 -32.63700 -29.52177 -27.69052 -26.28808 -23.60429 -22.88011 -22.00635 -21.43012 -20.80274 -19.04540 -18.41483 -17.73030 -16.94616 -16.64460 -16.43852 -16.37497 -16.15334 -15.03027 -14.67750 -14.49856 -14.22688 -13.93072 -13.83385 -13.33515 -13.19900 -13.03492 -12.75584 -12.71471 -12.50058 -12.25567 -12.14821 -12.12474 -11.86290 -11.81167 -11.59452 -11.40487 -11.29462 -11.25967 -10.96385 -10.54014 -9.51025 -8.18658 -6.30064 1.22514 1.40325 1.41919 1.53001 2.05601 2.41844 3.09198 3.14034 3.59886 3.61166 3.96306 4.09027 4.18824 4.22292 4.32936 4.41696 4.52190 4.58909 4.61206 4.65968 4.73911 4.85118 4.90710 4.99212 5.02047 5.06366 5.18703 5.20418 5.29848 5.31843 5.39482 5.57405 5.64148 5.79303 5.88363 5.92136 6.04945 6.27508 6.87689 7.02238 7.39229 8.93192 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.003480 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.447559 B = 8042.903994 C = 8713.851364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.098 4.098 11 C -0.097 4.097 12 C 0.052 3.948 13 N -0.512 5.512 14 C 0.029 3.971 15 C -0.120 4.120 16 C -0.112 4.112 17 C 0.072 3.928 18 H 0.049 0.951 19 C -0.102 4.102 20 C 0.489 3.511 21 O -0.545 6.545 22 O -0.514 6.514 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.012 1.012 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -22.089 -2.944 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.136 4.136 11 C -0.135 4.135 12 C -0.076 4.076 13 N -0.236 5.236 14 C -0.099 4.099 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.036 4.036 18 H 0.067 0.933 19 C -0.139 4.139 20 C 0.333 3.667 21 O -0.436 6.436 22 O -0.328 6.328 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.006 0.994 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.165 -21.791 -3.009 22.596 hybrid contribution 1.238 0.657 0.519 1.495 sum 6.403 -21.134 -2.490 22.223 Atomic orbital electron populations 1.70103 1.07831 1.27743 1.51780 1.26011 0.95787 1.03428 0.94766 0.85444 0.78643 0.78394 0.78547 1.19667 1.20734 1.18756 1.21752 0.93554 0.92567 1.50403 0.92234 1.19013 0.94499 0.93232 0.94622 1.21419 0.97992 0.93793 1.00389 1.21379 0.97829 0.92747 1.01506 1.22266 0.95213 0.88923 1.01213 1.65204 1.33510 1.01110 1.23799 1.23193 1.00572 0.97006 0.89101 1.22302 1.00899 0.93574 0.98983 1.22310 0.98317 0.95918 0.98431 1.22372 0.95574 0.91984 0.93702 0.93256 1.21273 0.98678 0.97489 0.96495 1.23478 0.80685 0.82655 0.79930 1.90711 1.54102 1.48536 1.50271 1.84517 1.60701 1.59120 1.28445 0.92787 0.99103 0.99354 0.93448 0.92850 0.93300 0.92310 0.90231 0.94435 0.93898 0.90212 0.90239 0.90297 0.90545 0.91111 0.85449 0.86975 0.71076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.04 5.15 30.60 0.16 -3.88 16 11 C -0.10 -3.27 5.39 30.60 0.17 -3.11 16 12 C 0.05 1.40 4.82 86.31 0.42 1.81 16 13 N -0.51 -12.23 4.98 -856.71 -4.27 -16.50 16 14 C 0.03 0.64 6.12 86.45 0.53 1.17 16 15 C -0.12 -2.12 7.00 31.49 0.22 -1.90 16 16 C -0.11 -2.07 5.70 31.49 0.18 -1.89 16 17 C 0.07 1.49 1.85 45.06 0.08 1.57 16 18 H 0.05 1.15 7.79 -2.38 -0.02 1.13 16 19 C -0.10 -1.76 5.47 29.84 0.16 -1.60 16 20 C 0.49 8.76 8.17 71.23 0.58 9.34 16 21 O -0.55 -12.79 15.69 21.96 0.34 -12.45 16 22 O -0.51 -6.78 13.42 -51.45 -0.69 -7.47 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.71 7.79 -2.39 -0.02 1.69 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 1.98 7.02 -2.38 -0.02 1.96 16 31 H 0.04 1.01 7.64 -2.39 -0.02 0.99 16 32 H 0.04 0.97 7.68 -2.39 -0.02 0.95 16 33 H 0.08 1.85 8.02 -2.38 -0.02 1.84 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.28 7.73 -2.39 -0.02 1.26 16 37 H 0.07 1.38 7.73 -2.39 -0.02 1.37 16 38 H 0.13 1.91 7.95 -2.39 -0.02 1.89 16 39 H 0.11 1.89 7.18 -2.39 -0.02 1.87 16 40 H 0.43 2.02 9.10 -74.06 -0.67 1.35 16 Total: -1.00 -69.81 326.11 1.37 -68.44 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.33 Total: 6.90 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.34 Total: -28.15 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.98 Total: -74.04 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.35 Total: -19.92 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.81 1.37 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385326615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.267 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds