Wall clock time and date at job start Mon Mar 30 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47258 * 270.00423 * 3 2 1 5 5 H 1.48507 * 109.47058 * 30.00337 * 3 2 1 6 6 H 1.48503 * 109.46927 * 150.00287 * 3 2 1 7 7 C 1.37873 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00441 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.43166 * 57.46056 * 9 7 2 11 11 C 1.54892 * 110.48942 * 294.77877 * 9 7 2 12 12 C 1.54885 * 102.75270 * 203.37875 * 11 9 7 13 13 C 1.54276 * 104.19366 * 37.93840 * 12 11 9 14 14 H 1.09000 * 110.07013 * 95.70048 * 13 12 11 15 15 N 1.46903 * 110.03051 * 217.10649 * 13 12 11 16 16 C 1.46894 * 110.99899 * 272.16730 * 15 13 12 17 17 C 1.52580 * 109.22500 * 155.00348 * 16 15 13 18 18 C 1.53096 * 109.95688 * 190.99866 * 17 16 15 19 19 S 1.81748 * 108.83974 * 296.97129 * 18 17 16 20 20 C 1.81744 * 102.22096 * 53.26874 * 19 18 17 21 21 C 1.52581 * 109.22972 * 276.23721 * 16 15 13 22 22 C 1.53867 * 106.59760 * 336.39366 * 13 12 11 23 23 H 0.97001 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09003 * 110.74974 * 321.69490 * 11 9 7 25 25 H 1.08996 * 110.75367 * 84.87385 * 11 9 7 26 26 H 1.09002 * 110.48626 * 279.26529 * 12 11 9 27 27 H 1.08999 * 110.48869 * 156.61871 * 12 11 9 28 28 H 1.00899 * 110.99807 * 148.21582 * 15 13 12 29 29 H 1.08999 * 109.19260 * 35.62103 * 16 15 13 30 30 H 1.08999 * 109.39287 * 70.85145 * 17 16 15 31 31 H 1.08998 * 109.30983 * 311.09562 * 17 16 15 32 32 H 1.08998 * 109.57729 * 56.78187 * 18 17 16 33 33 H 1.09010 * 109.57773 * 177.16828 * 18 17 16 34 34 H 1.08997 * 109.58091 * 186.92651 * 20 19 18 35 35 H 1.09003 * 109.68420 * 66.60275 * 20 19 18 36 36 H 1.09000 * 109.39174 * 289.15662 * 21 16 15 37 37 H 1.09001 * 109.38570 * 48.85710 * 21 16 15 38 38 H 1.09001 * 110.03214 * 119.28454 * 22 13 12 39 39 H 1.09002 * 110.03231 * 240.71112 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8614 11 6 0.4538 -2.6649 1.3171 12 6 0.2758 -4.2002 1.4181 13 6 1.6126 -4.7708 0.9008 14 1 2.2770 -4.9847 1.7380 15 7 1.3707 -5.9949 0.1254 16 6 1.3558 -7.1765 0.9979 17 6 0.5258 -8.2755 0.3412 18 6 0.2693 -9.4053 1.3421 19 16 1.8610 -10.1471 1.8104 20 6 2.8189 -8.6977 2.3441 21 6 2.7883 -7.6476 1.2304 22 6 2.2325 -3.6893 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 1.0251 -2.2856 2.1644 25 1 -0.5123 -2.1648 1.2495 26 1 -0.5495 -4.5309 0.7876 27 1 0.1092 -4.4976 2.4534 28 1 2.0532 -6.0974 -0.6106 29 1 0.9060 -6.9100 1.9544 30 1 1.0649 -8.6705 -0.5199 31 1 -0.4267 -7.8601 0.0125 32 1 -0.2213 -9.0034 2.2286 33 1 -0.3657 -10.1630 0.8828 34 1 3.8497 -8.9929 2.5395 35 1 2.3801 -8.2813 3.2509 36 1 3.1796 -8.0835 0.3112 37 1 3.4067 -6.7972 1.5178 38 1 3.1974 -3.3777 0.3988 39 1 2.3540 -4.0726 -1.0142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393904397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:38 Heat of formation + Delta-G solvation = -26.430713 kcal Electronic energy + Delta-G solvation = -17260.544028 eV Core-core repulsion = 14713.673238 eV Total energy + Delta-G solvation = -2546.870790 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.69669 -36.50354 -33.02797 -31.70144 -31.38980 -28.13039 -27.15413 -24.76255 -23.49002 -23.18504 -20.71885 -19.29871 -19.00318 -17.04730 -16.51455 -15.59315 -14.90193 -14.83348 -14.56011 -13.97364 -13.76992 -13.55008 -13.12920 -13.05923 -12.80748 -12.39282 -12.31299 -11.69940 -11.54292 -11.00167 -10.94498 -10.76578 -10.67107 -10.50628 -10.37737 -10.16460 -9.89553 -9.81515 -9.52457 -9.14083 -8.74808 -8.33471 -8.10768 -7.86149 -5.97858 -4.00573 1.60933 2.35506 3.31298 3.38190 3.40883 4.20398 4.45892 4.52743 4.69599 4.83958 4.94482 5.03948 5.22604 5.33346 5.38881 5.46493 5.50578 5.53808 5.65743 5.78390 5.80804 5.94846 6.08762 6.10393 6.35682 6.48578 6.63893 6.72679 6.87177 7.04901 7.18648 7.36001 7.51951 7.68342 7.76762 7.92051 8.08576 8.48873 9.02422 9.63163 11.11587 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.055693 B = 0.003986 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.638705 B = 7022.279605 C = 7237.695355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.115 4.115 13 C 0.084 3.916 14 H 0.033 0.967 15 N -0.675 5.675 16 C 0.081 3.919 17 C -0.110 4.110 18 C -0.076 4.076 19 S -0.280 6.280 20 C -0.074 4.074 21 C -0.152 4.152 22 C -0.117 4.117 23 H 0.259 0.741 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.337 0.663 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -16.865 3.379 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.034 3.966 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.154 4.154 13 C -0.025 4.025 14 H 0.051 0.949 15 N -0.305 5.305 16 C -0.030 4.030 17 C -0.149 4.149 18 C -0.225 4.225 19 S -0.054 6.054 20 C -0.222 4.222 21 C -0.193 4.193 22 C -0.155 4.155 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.156 0.844 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.742 -17.728 3.357 18.127 hybrid contribution 1.101 2.078 0.366 2.380 sum 2.843 -15.650 3.724 16.336 Atomic orbital electron populations 1.69966 1.05849 1.26338 1.50607 1.24975 0.94817 0.98932 0.95188 0.86673 0.79899 0.83835 0.78050 1.20749 1.21290 1.20020 1.21224 0.92654 0.90744 1.50678 0.92870 1.19368 0.92396 0.90894 0.93924 0.94977 1.22419 1.01275 0.90622 0.99582 1.22504 0.96360 0.98515 0.97980 1.22308 0.96763 0.88805 0.94644 0.94861 1.60830 1.55568 1.00991 1.13093 1.21550 0.93243 0.91197 0.97018 1.21703 1.01840 0.93762 0.97642 1.23466 0.95472 1.01116 1.02423 1.86797 1.15112 1.17477 1.86060 1.23368 1.02318 0.95718 1.00841 1.22524 0.99439 0.98550 0.98785 1.22475 0.99784 0.96308 0.96977 0.93136 0.93738 0.91518 0.91656 0.94422 0.84370 0.90663 0.90905 0.89614 0.89867 0.87783 0.88052 0.89907 0.90524 0.90706 0.92853 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 12.29 55.43 0.68 -24.97 16 2 C 0.06 1.73 5.35 -17.82 -0.10 1.64 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.11 8.46 -34.44 -0.29 -14.40 16 8 H 0.05 1.44 7.54 -52.49 -0.40 1.04 16 9 C 0.05 1.31 2.72 -90.11 -0.25 1.06 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.10 -2.33 5.75 -24.74 -0.14 -2.47 16 12 C -0.12 -2.18 6.39 -25.07 -0.16 -2.34 16 13 C 0.08 1.44 2.95 -66.59 -0.20 1.24 16 14 H 0.03 0.56 7.06 -51.93 -0.37 0.19 16 15 N -0.67 -9.73 5.99 -99.02 -0.59 -10.33 16 16 C 0.08 0.96 2.06 -68.15 -0.14 0.82 16 17 C -0.11 -1.16 5.34 -26.90 -0.14 -1.31 16 18 C -0.08 -0.72 6.45 37.21 0.24 -0.48 16 19 S -0.28 -3.00 22.33 -107.50 -2.40 -5.40 16 20 C -0.07 -0.72 6.46 37.21 0.24 -0.48 16 21 C -0.15 -1.62 5.00 -26.89 -0.13 -1.75 16 22 C -0.12 -2.36 6.04 -25.62 -0.15 -2.52 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.04 1.06 8.05 -51.93 -0.42 0.64 16 25 H 0.07 1.69 7.55 -51.93 -0.39 1.30 16 26 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.34 4.63 7.77 -39.29 -0.31 4.32 16 29 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 30 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.07 0.84 7.25 -51.93 -0.38 0.47 16 38 H 0.05 1.08 7.66 -51.93 -0.40 0.69 16 39 H 0.05 0.93 7.47 -51.93 -0.39 0.55 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -27.93 311.95 -10.64 -38.57 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.79 Total: 2.15 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -1.22 Total: -21.00 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.09 Total: -35.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.40 Total: -5.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.93 -10.64 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393904397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.139 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds