Wall clock time and date at job start Mon Mar 30 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48493 * 109.47258 * 270.00423 * 3 2 1 5 5 H 1.48507 * 109.47058 * 30.00337 * 3 2 1 6 6 H 1.48503 * 109.46927 * 150.00287 * 3 2 1 7 7 C 1.37873 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00441 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.43166 * 57.46056 * 9 7 2 11 11 C 1.54892 * 110.48942 * 294.77877 * 9 7 2 12 12 C 1.54885 * 102.75270 * 203.37875 * 11 9 7 13 13 C 1.54276 * 104.19366 * 37.93840 * 12 11 9 14 14 H 1.09000 * 110.07013 * 95.70048 * 13 12 11 15 15 N 1.46903 * 110.03051 * 217.10649 * 13 12 11 16 16 C 1.46894 * 110.99899 * 272.16730 * 15 13 12 17 17 C 1.52580 * 109.22500 * 155.00348 * 16 15 13 18 18 C 1.53096 * 109.95688 * 190.99866 * 17 16 15 19 19 S 1.81748 * 108.83974 * 296.97129 * 18 17 16 20 20 C 1.81744 * 102.22096 * 53.26874 * 19 18 17 21 21 C 1.52581 * 109.22972 * 276.23721 * 16 15 13 22 22 C 1.53867 * 106.59760 * 336.39366 * 13 12 11 23 23 H 0.97001 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09003 * 110.74974 * 321.69490 * 11 9 7 25 25 H 1.08996 * 110.75367 * 84.87385 * 11 9 7 26 26 H 1.09002 * 110.48626 * 279.26529 * 12 11 9 27 27 H 1.08999 * 110.48869 * 156.61871 * 12 11 9 28 28 H 1.00899 * 110.99807 * 148.21582 * 15 13 12 29 29 H 1.08999 * 109.19260 * 35.62103 * 16 15 13 30 30 H 1.08999 * 109.39287 * 70.85145 * 17 16 15 31 31 H 1.08998 * 109.30983 * 311.09562 * 17 16 15 32 32 H 1.08998 * 109.57729 * 56.78187 * 18 17 16 33 33 H 1.09010 * 109.57773 * 177.16828 * 18 17 16 34 34 H 1.08997 * 109.58091 * 186.92651 * 20 19 18 35 35 H 1.09003 * 109.68420 * 66.60275 * 20 19 18 36 36 H 1.09000 * 109.39174 * 289.15662 * 21 16 15 37 37 H 1.09001 * 109.38570 * 48.85710 * 21 16 15 38 38 H 1.09001 * 110.03214 * 119.28454 * 22 13 12 39 39 H 1.09002 * 110.03231 * 240.71112 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8614 11 6 0.4538 -2.6649 1.3171 12 6 0.2758 -4.2002 1.4181 13 6 1.6126 -4.7708 0.9008 14 1 2.2770 -4.9847 1.7380 15 7 1.3707 -5.9949 0.1254 16 6 1.3558 -7.1765 0.9979 17 6 0.5258 -8.2755 0.3412 18 6 0.2693 -9.4053 1.3421 19 16 1.8610 -10.1471 1.8104 20 6 2.8189 -8.6977 2.3441 21 6 2.7883 -7.6476 1.2304 22 6 2.2325 -3.6893 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 1.0251 -2.2856 2.1644 25 1 -0.5123 -2.1648 1.2495 26 1 -0.5495 -4.5309 0.7876 27 1 0.1092 -4.4976 2.4534 28 1 2.0532 -6.0974 -0.6106 29 1 0.9060 -6.9100 1.9544 30 1 1.0649 -8.6705 -0.5199 31 1 -0.4267 -7.8601 0.0125 32 1 -0.2213 -9.0034 2.2286 33 1 -0.3657 -10.1630 0.8828 34 1 3.8497 -8.9929 2.5395 35 1 2.3801 -8.2813 3.2509 36 1 3.1796 -8.0835 0.3112 37 1 3.4067 -6.7972 1.5178 38 1 3.1974 -3.3777 0.3988 39 1 2.3540 -4.0726 -1.0142 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393904397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:37 Heat of formation + Delta-G solvation = -41.642318 kcal Electronic energy + Delta-G solvation = -17261.203652 eV Core-core repulsion = 14713.673238 eV Total energy + Delta-G solvation = -2547.530415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95102 -37.88681 -34.79260 -32.98656 -32.43857 -29.92152 -28.59295 -26.21200 -25.11841 -24.01109 -21.77404 -20.98374 -20.56054 -18.54632 -17.88769 -16.83752 -16.56199 -16.06602 -15.73338 -15.31327 -15.03926 -14.69895 -14.24840 -14.04984 -13.99028 -13.80123 -13.66261 -13.19227 -12.93500 -12.69183 -12.46902 -12.35141 -12.09272 -11.83650 -11.68605 -11.62205 -11.42460 -11.35553 -10.99849 -10.78770 -10.64731 -10.44107 -9.28197 -8.68640 -8.10375 -6.20287 0.83808 1.40966 1.41529 1.51572 1.58553 2.43989 3.12827 3.20397 3.66966 3.86802 3.99328 4.01162 4.07805 4.14994 4.25769 4.34618 4.46632 4.51564 4.64445 4.75897 4.76842 4.81963 4.93091 4.97348 4.98945 5.08492 5.18312 5.22127 5.27038 5.33316 5.44153 5.52630 5.65905 5.94020 6.01941 6.23775 6.41331 6.54957 6.91850 7.47148 8.98424 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.055693 B = 0.003986 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.638705 B = 7022.279605 C = 7237.695355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.043 3.957 10 H -0.005 1.005 11 C -0.095 4.095 12 C -0.104 4.104 13 C 0.099 3.901 14 H 0.048 0.952 15 N -0.679 5.679 16 C 0.083 3.917 17 C -0.104 4.104 18 C -0.068 4.068 19 S -0.304 6.304 20 C -0.067 4.067 21 C -0.145 4.145 22 C -0.109 4.109 23 H 0.259 0.741 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.344 0.656 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 -18.012 3.907 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.024 3.976 10 H 0.013 0.987 11 C -0.133 4.133 12 C -0.142 4.142 13 C -0.010 4.010 14 H 0.066 0.934 15 N -0.310 5.310 16 C -0.027 4.027 17 C -0.143 4.143 18 C -0.216 4.216 19 S -0.079 6.079 20 C -0.216 4.216 21 C -0.186 4.186 22 C -0.147 4.147 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.773 -18.895 3.882 19.488 hybrid contribution 0.757 2.422 0.174 2.544 sum 3.530 -16.473 4.056 17.328 Atomic orbital electron populations 1.70103 1.07288 1.27081 1.51510 1.25773 0.95632 1.02429 0.94938 0.85653 0.78812 0.79587 0.78199 1.20210 1.21032 1.19133 1.21628 0.92896 0.92226 1.50378 0.92898 1.19353 0.92962 0.92153 0.93136 0.98653 1.22217 0.99052 0.93741 0.98324 1.22371 0.97358 0.95061 0.99402 1.21996 0.95402 0.89076 0.94531 0.93445 1.60723 1.55928 1.00900 1.13418 1.21584 0.94379 0.90474 0.96299 1.21621 1.01273 0.93578 0.97846 1.23456 0.94926 1.00931 1.02326 1.86926 1.16185 1.18586 1.86197 1.23363 1.02878 0.94850 1.00494 1.22423 0.98247 0.98650 0.99263 1.22316 0.98520 0.95454 0.98384 0.93196 0.94813 0.94686 0.92159 0.92257 0.83637 0.91266 0.90804 0.90129 0.89436 0.86450 0.86912 0.89539 0.90292 0.90971 0.92977 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 12.29 21.45 0.26 -54.17 16 2 C 0.01 0.61 5.35 84.65 0.45 1.06 16 3 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -29.63 8.46 25.60 0.22 -29.41 16 8 H 0.05 2.87 7.54 -2.91 -0.02 2.84 16 9 C 0.04 2.15 2.72 -10.47 -0.03 2.13 16 10 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 11 C -0.09 -4.48 5.75 31.88 0.18 -4.30 16 12 C -0.10 -3.82 6.39 31.67 0.20 -3.62 16 13 C 0.10 3.24 2.95 45.64 0.13 3.38 16 14 H 0.05 1.45 7.06 -2.39 -0.02 1.43 16 15 N -0.68 -18.23 5.99 -467.20 -2.80 -21.03 16 16 C 0.08 1.77 2.06 44.64 0.09 1.87 16 17 C -0.10 -1.96 5.34 30.49 0.16 -1.80 16 18 C -0.07 -1.13 6.45 72.01 0.46 -0.67 16 19 S -0.30 -5.86 22.33 -56.49 -1.26 -7.12 16 20 C -0.07 -1.14 6.46 72.02 0.46 -0.68 16 21 C -0.15 -2.71 5.00 30.49 0.15 -2.56 16 22 C -0.11 -4.30 6.04 31.32 0.19 -4.11 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.03 1.62 8.05 -2.39 -0.02 1.60 16 25 H 0.03 1.83 7.55 -2.39 -0.02 1.82 16 26 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.34 8.69 7.77 -89.69 -0.70 8.00 16 29 H 0.07 1.60 7.70 -2.39 -0.02 1.59 16 30 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 37 H 0.07 1.42 7.25 -2.39 -0.02 1.40 16 38 H 0.05 2.06 7.66 -2.39 -0.02 2.04 16 39 H 0.06 2.14 7.47 -2.39 -0.02 2.12 16 Total: -1.00 -60.35 311.95 1.23 -59.12 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.31 Total: 15.96 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 2.69 Total: -38.72 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -2.53 Total: -75.20 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.26 Total: -7.12 kcal Total: -60.35 1.23 -59.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393904397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.475 kcal (2) G-P(sol) polarization free energy of solvation -60.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds