Wall clock time and date at job start Mon Mar 30 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08999 * 110.00831 * 300.69971 * 9 7 2 11 11 C 1.53869 * 110.03178 * 62.08496 * 9 7 2 12 12 C 1.54276 * 106.59637 * 119.29071 * 11 9 7 13 13 C 1.54894 * 104.19265 * 23.60520 * 12 11 9 14 14 H 1.09003 * 110.75308 * 80.37507 * 13 12 11 15 15 N 1.46895 * 110.75376 * 203.55713 * 13 12 11 16 16 C 1.46903 * 111.00322 * 273.55261 * 15 13 12 17 17 C 1.52580 * 109.22306 * 275.59608 * 16 15 13 18 18 C 1.53124 * 109.94592 * 168.95883 * 17 16 15 19 19 S 1.81747 * 108.80506 * 63.08852 * 18 17 16 20 20 C 1.81747 * 102.22031 * 306.71459 * 19 18 17 21 21 C 1.52577 * 109.22900 * 154.40345 * 16 15 13 22 22 C 1.54261 * 110.03200 * 179.31084 * 9 7 2 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.03373 * 238.57004 * 11 9 7 25 25 H 1.08994 * 110.03739 * 0.02562 * 11 9 7 26 26 H 1.08995 * 110.48303 * 142.28740 * 12 11 9 27 27 H 1.08999 * 110.48492 * 264.80057 * 12 11 9 28 28 H 1.00899 * 111.00328 * 37.50373 * 15 13 12 29 29 H 1.08995 * 109.22327 * 34.99765 * 16 15 13 30 30 H 1.08992 * 109.39662 * 289.14996 * 17 16 15 31 31 H 1.09003 * 109.38884 * 48.86036 * 17 16 15 32 32 H 1.09000 * 109.60705 * 303.28545 * 18 17 16 33 33 H 1.08995 * 109.68052 * 182.93906 * 18 17 16 34 34 H 1.09002 * 109.58005 * 293.45616 * 20 19 18 35 35 H 1.09003 * 109.57655 * 173.06959 * 20 19 18 36 36 H 1.08998 * 109.39191 * 311.14743 * 21 16 15 37 37 H 1.09004 * 109.39393 * 70.84325 * 21 16 15 38 38 H 1.09000 * 110.49016 * 335.77683 * 22 9 7 39 39 H 1.09001 * 110.49236 * 98.42699 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6153 -2.5629 0.8773 11 6 0.3962 -2.6142 -1.2801 12 6 0.8973 -3.8624 -2.0357 13 6 1.5541 -4.7337 -0.9364 14 1 0.7982 -5.2872 -0.3793 15 7 2.5429 -5.6500 -1.5199 16 6 1.9053 -6.8933 -1.9734 17 6 1.7832 -7.8542 -0.7945 18 6 0.8837 -9.0341 -1.1734 19 16 1.6658 -9.9546 -2.5314 20 6 1.9683 -8.6478 -3.7578 21 6 2.7446 -7.5110 -3.0878 22 6 2.2418 -3.6813 -0.0302 23 1 -0.4850 -0.8400 0.0004 24 1 -0.6543 -2.7348 -1.0153 25 1 0.5265 -1.7263 -1.8986 26 1 0.0619 -4.3918 -2.4938 27 1 1.6306 -3.5817 -2.7917 28 1 3.0466 -5.2064 -2.2733 29 1 0.9103 -6.6672 -2.3567 30 1 2.7723 -8.2243 -0.5253 31 1 1.3506 -7.3291 0.0571 32 1 -0.0892 -8.6635 -1.4961 33 1 0.7573 -9.6905 -0.3125 34 1 1.0165 -8.2697 -4.1310 35 1 2.5527 -9.0512 -4.5848 36 1 2.9802 -6.7475 -3.8291 37 1 3.6709 -7.9036 -2.6681 38 1 3.1944 -3.3720 -0.4604 39 1 2.3869 -4.0784 0.9744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393904399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:41 Heat of formation + Delta-G solvation = -31.248763 kcal Electronic energy + Delta-G solvation = -17319.364239 eV Core-core repulsion = 14772.284523 eV Total energy + Delta-G solvation = -2547.079716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76987 -36.75534 -33.35647 -31.75156 -31.34051 -28.10277 -27.03778 -24.74227 -23.55028 -23.25650 -20.56766 -19.79466 -19.10767 -17.05363 -16.78470 -16.01410 -14.95520 -14.63957 -14.44453 -14.10062 -13.86461 -13.72823 -13.12197 -13.04708 -12.75236 -12.53995 -12.22501 -11.81761 -11.56287 -11.49208 -10.98294 -10.89915 -10.56220 -10.49257 -10.41735 -10.10022 -9.98108 -9.87336 -9.83870 -9.37790 -8.41215 -8.30649 -8.10337 -7.89070 -6.30730 -4.02111 1.57293 2.31947 3.44462 3.45831 3.64551 4.06958 4.53669 4.55365 4.62886 4.78481 4.93202 4.99303 5.14544 5.30601 5.35764 5.41163 5.41266 5.48290 5.54591 5.69568 5.75509 5.80625 5.93556 6.05924 6.17355 6.33001 6.46532 6.56421 6.65001 6.86032 6.90190 7.11912 7.34263 7.44200 7.59575 7.71702 8.30350 8.47256 8.92902 9.69799 11.07723 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.004004 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.229822 B = 6991.241963 C = 7056.795834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.590 4.590 8 H 0.048 0.952 9 C 0.028 3.972 10 H 0.016 0.984 11 C -0.108 4.108 12 C -0.147 4.147 13 C 0.080 3.920 14 H 0.073 0.927 15 N -0.677 5.677 16 C 0.081 3.919 17 C -0.110 4.110 18 C -0.078 4.078 19 S -0.276 6.276 20 C -0.076 4.076 21 C -0.123 4.123 22 C -0.091 4.091 23 H 0.271 0.729 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.341 0.659 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.698 -16.479 -5.983 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.628 4.628 8 H 0.066 0.934 9 C 0.009 3.991 10 H 0.034 0.966 11 C -0.147 4.147 12 C -0.186 4.186 13 C -0.029 4.029 14 H 0.091 0.909 15 N -0.307 5.307 16 C -0.029 4.029 17 C -0.149 4.149 18 C -0.227 4.227 19 S -0.050 6.050 20 C -0.225 4.225 21 C -0.162 4.162 22 C -0.129 4.129 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.922 -16.184 -5.441 17.322 hybrid contribution -0.666 -0.077 -0.806 1.049 sum 2.256 -16.261 -6.247 17.565 Atomic orbital electron populations 1.70782 1.06833 1.30931 1.46578 1.25767 0.96586 1.02491 0.93892 0.83593 0.74924 0.75598 0.76479 1.20887 1.21507 1.21568 1.22067 0.93948 0.91460 1.55366 0.93385 1.19409 0.93152 0.93809 0.92717 0.96593 1.22294 0.97678 0.95662 0.99095 1.23000 0.99313 0.98235 0.98053 1.22739 0.92639 0.92005 0.95531 0.90879 1.60590 1.27811 1.05393 1.36880 1.21418 0.96422 0.91367 0.93700 1.21728 1.00367 0.94209 0.98620 1.23487 1.00793 0.99862 0.98524 1.86804 1.80759 1.18949 1.18514 1.23409 1.03619 0.96792 0.98687 1.21911 0.99566 0.97221 0.97543 1.22308 0.99395 0.94224 0.96981 0.91737 0.94684 0.91706 0.93955 0.92478 0.83961 0.94036 0.90133 0.90435 0.90046 0.87708 0.89970 0.87725 0.90778 0.89794 0.92054 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.34 13.27 55.43 0.74 -26.60 16 2 C 0.02 0.47 5.08 -17.82 -0.09 0.38 16 3 Si 1.07 25.11 29.90 -169.99 -5.08 20.02 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.59 -16.41 8.33 -34.44 -0.29 -16.69 16 8 H 0.05 1.34 7.55 -52.49 -0.40 0.94 16 9 C 0.03 0.69 2.51 -90.66 -0.23 0.46 16 10 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 11 C -0.11 -2.47 4.89 -25.61 -0.13 -2.59 16 12 C -0.15 -2.66 6.26 -25.06 -0.16 -2.82 16 13 C 0.08 1.37 2.90 -65.68 -0.19 1.18 16 14 H 0.07 1.24 7.15 -51.93 -0.37 0.87 16 15 N -0.68 -9.61 6.16 -98.07 -0.60 -10.21 16 16 C 0.08 0.96 2.12 -68.14 -0.14 0.82 16 17 C -0.11 -1.24 5.26 -26.88 -0.14 -1.38 16 18 C -0.08 -0.78 6.46 37.22 0.24 -0.54 16 19 S -0.28 -2.94 22.33 -107.50 -2.40 -5.34 16 20 C -0.08 -0.70 6.45 37.21 0.24 -0.46 16 21 C -0.12 -1.22 5.14 -26.90 -0.14 -1.36 16 22 C -0.09 -1.88 6.05 -25.03 -0.15 -2.03 16 23 H 0.27 8.02 5.98 -40.82 -0.24 7.77 16 24 H 0.03 0.78 7.88 -51.93 -0.41 0.38 16 25 H 0.06 1.65 7.21 -51.93 -0.37 1.28 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16 28 H 0.34 4.71 7.73 -39.29 -0.30 4.41 16 29 H 0.04 0.53 7.67 -51.93 -0.40 0.13 16 30 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.08 0.95 7.28 -51.93 -0.38 0.57 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 37 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 38 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -29.01 309.18 -10.54 -39.54 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.67 Total: 2.96 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -1.17 Total: -25.04 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.13 Total: -36.81 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.02 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.40 Total: -5.34 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.01 -10.54 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393904399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.295 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds