Wall clock time and date at job start Mon Mar 30 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 H 1.08999 * 110.00831 * 300.69971 * 9 7 2 11 11 C 1.53869 * 110.03178 * 62.08496 * 9 7 2 12 12 C 1.54276 * 106.59637 * 119.29071 * 11 9 7 13 13 C 1.54894 * 104.19265 * 23.60520 * 12 11 9 14 14 H 1.09003 * 110.75308 * 80.37507 * 13 12 11 15 15 N 1.46895 * 110.75376 * 203.55713 * 13 12 11 16 16 C 1.46903 * 111.00322 * 273.55261 * 15 13 12 17 17 C 1.52580 * 109.22306 * 275.59608 * 16 15 13 18 18 C 1.53124 * 109.94592 * 168.95883 * 17 16 15 19 19 S 1.81747 * 108.80506 * 63.08852 * 18 17 16 20 20 C 1.81747 * 102.22031 * 306.71459 * 19 18 17 21 21 C 1.52577 * 109.22900 * 154.40345 * 16 15 13 22 22 C 1.54261 * 110.03200 * 179.31084 * 9 7 2 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.08997 * 110.03373 * 238.57004 * 11 9 7 25 25 H 1.08994 * 110.03739 * 0.02562 * 11 9 7 26 26 H 1.08995 * 110.48303 * 142.28740 * 12 11 9 27 27 H 1.08999 * 110.48492 * 264.80057 * 12 11 9 28 28 H 1.00899 * 111.00328 * 37.50373 * 15 13 12 29 29 H 1.08995 * 109.22327 * 34.99765 * 16 15 13 30 30 H 1.08992 * 109.39662 * 289.14996 * 17 16 15 31 31 H 1.09003 * 109.38884 * 48.86036 * 17 16 15 32 32 H 1.09000 * 109.60705 * 303.28545 * 18 17 16 33 33 H 1.08995 * 109.68052 * 182.93906 * 18 17 16 34 34 H 1.09002 * 109.58005 * 293.45616 * 20 19 18 35 35 H 1.09003 * 109.57655 * 173.06959 * 20 19 18 36 36 H 1.08998 * 109.39191 * 311.14743 * 21 16 15 37 37 H 1.09004 * 109.39393 * 70.84325 * 21 16 15 38 38 H 1.09000 * 110.49016 * 335.77683 * 22 9 7 39 39 H 1.09001 * 110.49236 * 98.42699 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 1 0.6153 -2.5629 0.8773 11 6 0.3962 -2.6142 -1.2801 12 6 0.8973 -3.8624 -2.0357 13 6 1.5541 -4.7337 -0.9364 14 1 0.7982 -5.2872 -0.3793 15 7 2.5429 -5.6500 -1.5199 16 6 1.9053 -6.8933 -1.9734 17 6 1.7832 -7.8542 -0.7945 18 6 0.8837 -9.0341 -1.1734 19 16 1.6658 -9.9546 -2.5314 20 6 1.9683 -8.6478 -3.7578 21 6 2.7446 -7.5110 -3.0878 22 6 2.2418 -3.6813 -0.0302 23 1 -0.4850 -0.8400 0.0004 24 1 -0.6543 -2.7348 -1.0153 25 1 0.5265 -1.7263 -1.8986 26 1 0.0619 -4.3918 -2.4938 27 1 1.6306 -3.5817 -2.7917 28 1 3.0466 -5.2064 -2.2733 29 1 0.9103 -6.6672 -2.3567 30 1 2.7723 -8.2243 -0.5253 31 1 1.3506 -7.3291 0.0571 32 1 -0.0892 -8.6635 -1.4961 33 1 0.7573 -9.6905 -0.3125 34 1 1.0165 -8.2697 -4.1310 35 1 2.5527 -9.0512 -4.5848 36 1 2.9802 -6.7475 -3.8291 37 1 3.6709 -7.9036 -2.6681 38 1 3.1944 -3.3720 -0.4604 39 1 2.3869 -4.0784 0.9744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393904399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:41 Heat of formation + Delta-G solvation = -47.577793 kcal Electronic energy + Delta-G solvation = -17320.072319 eV Core-core repulsion = 14772.284523 eV Total energy + Delta-G solvation = -2547.787796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07902 -38.12156 -35.08613 -32.88561 -32.53845 -29.86737 -28.46477 -26.19306 -25.25037 -24.15213 -21.55968 -21.24720 -20.94137 -18.83655 -17.88472 -17.19983 -16.19345 -16.16759 -15.64866 -15.46501 -15.01388 -14.83114 -14.68644 -14.22043 -13.93670 -13.74081 -13.42499 -13.33347 -12.92225 -12.72571 -12.39521 -12.31928 -12.26818 -11.96789 -11.82667 -11.74138 -11.63117 -11.30828 -11.21506 -10.69041 -10.51833 -10.40137 -9.33381 -8.70737 -8.56546 -6.28949 0.81094 1.52693 1.55946 1.60253 1.79298 2.58467 2.99149 3.22103 3.69130 3.77062 3.87834 3.93760 4.00074 4.04875 4.11941 4.23547 4.35079 4.46063 4.54497 4.61705 4.68856 4.73652 4.80999 4.84883 4.90347 4.94640 5.02455 5.04195 5.14038 5.23471 5.24445 5.32831 5.54354 5.70651 6.10823 6.15689 6.26418 6.45631 6.70955 7.51326 8.82239 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.054650 B = 0.004004 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.229822 B = 6991.241963 C = 7056.795834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.033 4.033 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.604 4.604 8 H 0.043 0.957 9 C 0.017 3.983 10 H -0.014 1.014 11 C -0.101 4.101 12 C -0.134 4.134 13 C 0.100 3.900 14 H 0.078 0.922 15 N -0.675 5.675 16 C 0.082 3.918 17 C -0.106 4.106 18 C -0.070 4.070 19 S -0.303 6.303 20 C -0.068 4.068 21 C -0.117 4.117 22 C -0.084 4.084 23 H 0.261 0.739 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.346 0.654 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -17.572 -7.098 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.231 4.231 3 Si 0.933 3.067 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.642 4.642 8 H 0.062 0.938 9 C -0.002 4.002 10 H 0.004 0.996 11 C -0.140 4.140 12 C -0.174 4.174 13 C -0.010 4.010 14 H 0.096 0.904 15 N -0.306 5.306 16 C -0.027 4.027 17 C -0.146 4.146 18 C -0.219 4.219 19 S -0.078 6.078 20 C -0.216 4.216 21 C -0.156 4.156 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.793 -17.313 -6.562 18.900 hybrid contribution -0.930 0.231 -0.430 1.050 sum 2.863 -17.082 -6.992 18.678 Atomic orbital electron populations 1.70891 1.07791 1.30399 1.48683 1.27161 0.96674 1.06210 0.93098 0.83011 0.74179 0.71740 0.77778 1.21137 1.19834 1.19671 1.22454 0.94005 0.93079 1.54664 0.93832 1.19454 0.93816 0.94524 0.92429 0.99561 1.22069 0.97149 0.96652 0.98120 1.22912 1.00238 0.96179 0.98024 1.22400 0.92613 0.91510 0.94461 0.90356 1.60497 1.27015 1.05506 1.37551 1.21486 0.96502 0.90232 0.94528 1.21675 1.00348 0.94479 0.98084 1.23445 1.00435 0.99331 0.98652 1.86941 1.80965 1.20353 1.19493 1.23434 1.04049 0.95780 0.98377 1.21843 0.99061 0.97637 0.97078 1.22151 0.98133 0.93903 0.98072 0.92874 0.95342 0.95082 0.91607 0.91832 0.83389 0.94185 0.90627 0.91396 0.89627 0.86739 0.89404 0.86140 0.89629 0.90101 0.92805 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 13.27 21.45 0.28 -57.26 16 2 C -0.03 -1.92 5.08 84.65 0.43 -1.49 16 3 Si 1.11 50.55 29.90 68.60 2.05 52.60 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.60 -34.15 8.33 25.60 0.21 -33.94 16 8 H 0.04 2.44 7.55 -2.91 -0.02 2.42 16 9 C 0.02 0.84 2.51 -10.82 -0.03 0.82 16 10 H -0.01 -0.76 8.00 -2.39 -0.02 -0.78 16 11 C -0.10 -4.66 4.89 31.32 0.15 -4.50 16 12 C -0.13 -4.65 6.26 31.67 0.20 -4.45 16 13 C 0.10 3.25 2.90 46.24 0.13 3.39 16 14 H 0.08 2.50 7.15 -2.39 -0.02 2.49 16 15 N -0.68 -17.60 6.16 -464.19 -2.86 -20.46 16 16 C 0.08 1.73 2.12 44.64 0.09 1.83 16 17 C -0.11 -2.19 5.26 30.50 0.16 -2.02 16 18 C -0.07 -1.25 6.46 72.02 0.47 -0.78 16 19 S -0.30 -5.81 22.33 -56.49 -1.26 -7.08 16 20 C -0.07 -1.05 6.45 72.01 0.46 -0.58 16 21 C -0.12 -1.98 5.14 30.49 0.16 -1.82 16 22 C -0.08 -3.45 6.05 31.69 0.19 -3.26 16 23 H 0.26 16.01 5.98 -92.71 -0.55 15.46 16 24 H 0.03 1.30 7.88 -2.39 -0.02 1.28 16 25 H 0.03 1.61 7.21 -2.39 -0.02 1.59 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 2.13 7.82 -2.39 -0.02 2.11 16 28 H 0.35 8.61 7.73 -89.69 -0.69 7.92 16 29 H 0.04 0.89 7.67 -2.39 -0.02 0.87 16 30 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 31 H 0.07 1.54 7.28 -2.39 -0.02 1.52 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 37 H 0.08 1.46 8.06 -2.38 -0.02 1.44 16 38 H 0.05 2.27 7.68 -2.39 -0.02 2.25 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -63.16 309.18 1.38 -61.77 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.53 Total: 17.25 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 2.63 Total: -46.83 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.58 Total: -77.72 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.05 Total: 52.60 kcal Atomic # 16 Polarization: -5.81 SS G_CDS: -1.26 Total: -7.08 kcal Total: -63.16 1.38 -61.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393904399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.197 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds