Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99925 * 2 1 4 4 H 1.48504 * 109.47121 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.46798 * 29.99951 * 3 2 1 6 6 H 1.48498 * 109.47193 * 150.00313 * 3 2 1 7 7 C 1.37874 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00525 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46634 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46554 * 180.02562 * 12 11 10 14 14 C 1.46899 * 110.99659 * 190.00258 * 13 12 11 15 15 C 1.52997 * 109.47426 * 75.87681 * 14 13 12 16 16 C 1.50700 * 109.46984 * 174.90388 * 15 14 13 17 17 O 1.20829 * 119.99942 * 0.02562 * 16 15 14 18 18 O 1.34232 * 120.00166 * 179.97438 * 16 15 14 19 19 C 1.46895 * 111.00265 * 66.04245 * 13 12 11 20 20 C 1.52994 * 117.50153 * 254.28090 * 19 13 12 21 21 C 1.52995 * 60.00106 * 252.51024 * 20 19 13 22 22 H 0.97005 * 120.00201 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47356 * 59.99947 * 9 7 2 24 24 H 1.09006 * 109.47316 * 300.00085 * 9 7 2 25 25 H 1.09003 * 109.46981 * 59.99580 * 10 9 7 26 26 H 1.09006 * 109.46803 * 300.00262 * 10 9 7 27 27 H 1.08993 * 109.46790 * 60.00055 * 11 10 9 28 28 H 1.08996 * 109.46871 * 299.99920 * 11 10 9 29 29 H 1.08992 * 109.47139 * 60.00105 * 12 11 10 30 30 H 1.08997 * 109.46893 * 299.99782 * 12 11 10 31 31 H 1.09007 * 109.46714 * 315.87527 * 14 13 12 32 32 H 1.09000 * 109.47132 * 195.88309 * 14 13 12 33 33 H 1.08999 * 109.47524 * 294.90890 * 15 14 13 34 34 H 1.08997 * 109.47051 * 54.90715 * 15 14 13 35 35 H 0.96694 * 117.00151 * 180.02562 * 18 16 15 36 36 H 1.09002 * 115.55189 * 39.99284 * 19 13 12 37 37 H 1.08998 * 117.50179 * 0.02562 * 20 19 13 38 38 H 1.09005 * 117.49676 * 145.01835 * 20 19 13 39 39 H 1.09003 * 117.50134 * 252.50514 * 21 20 19 40 40 H 1.09006 * 117.51680 * 107.47983 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0018 14 6 2.6464 -8.5534 0.2370 15 6 3.0210 -8.6028 1.7196 16 6 3.8483 -9.8335 1.9880 17 8 4.1116 -10.5929 1.0858 18 8 4.2934 -10.0855 3.2290 19 6 0.9960 -7.5993 -1.2558 20 6 -0.5217 -7.4118 -1.2093 21 6 0.0715 -8.8136 -1.3633 22 1 -0.4851 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.8541 -5.0445 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 3.1007 -6.0923 0.8898 30 1 3.1019 -6.0921 -0.8901 31 1 3.5487 -8.4288 -0.3618 32 1 2.1497 -9.4823 -0.0434 33 1 3.5968 -7.7143 1.9787 34 1 2.1137 -8.6363 2.3226 35 1 4.8205 -10.8868 3.3520 36 1 1.5153 -7.2806 -2.1597 37 1 -0.9680 -7.1566 -0.2482 38 1 -1.0012 -6.9694 -2.0825 39 1 -0.0177 -9.2936 -2.3379 40 1 0.0157 -9.4813 -0.5035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395349361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = -87.406008 kcal Electronic energy + Delta-G solvation = -18603.350418 eV Core-core repulsion = 15611.082669 eV Total energy + Delta-G solvation = -2992.267748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51940 -38.73431 -36.43510 -35.24132 -34.22751 -32.46533 -30.78024 -28.18274 -25.08211 -23.89457 -22.31185 -21.96312 -21.05168 -19.99197 -19.94688 -18.34026 -16.97002 -16.49349 -16.17605 -15.93700 -15.33443 -14.58876 -14.36991 -14.19138 -14.11770 -13.40546 -12.84030 -12.59531 -12.35726 -12.24638 -11.82302 -11.68251 -11.53681 -11.35784 -11.16979 -10.96197 -10.85681 -10.68557 -10.48410 -10.42787 -10.19914 -10.12116 -9.57730 -9.23579 -8.98131 -8.37326 -8.30676 -5.96019 -3.98132 1.95285 2.70530 3.33770 3.39902 3.43350 3.79572 3.84284 4.48847 4.59128 4.78314 4.92780 4.98098 5.08930 5.21230 5.33499 5.36252 5.39624 5.50763 5.58536 5.66229 5.72067 5.81086 5.93557 6.01351 6.17640 6.20815 6.23642 6.27792 6.56407 6.85255 6.98161 7.03500 7.12497 7.25973 7.62495 7.73430 7.89756 8.05422 8.48260 9.09499 9.65668 11.15275 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.003654 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.780615 B = 7661.544923 C = 8588.472710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.110 4.110 12 C 0.056 3.944 13 N -0.513 5.513 14 C 0.067 3.933 15 C -0.112 4.112 16 C 0.482 3.518 17 O -0.520 6.520 18 O -0.517 6.517 19 C 0.010 3.990 20 C -0.156 4.156 21 C -0.179 4.179 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.409 0.591 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -20.437 2.128 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.148 4.148 12 C -0.071 4.071 13 N -0.237 5.237 14 C -0.061 4.061 15 C -0.150 4.150 16 C 0.325 3.675 17 O -0.409 6.409 18 O -0.329 6.329 19 C -0.098 4.098 20 C -0.194 4.194 21 C -0.216 4.216 22 H 0.069 0.931 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.267 0.733 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.472 -20.155 2.210 20.571 hybrid contribution 1.426 0.453 -0.550 1.594 sum 4.898 -19.702 1.661 20.369 Atomic orbital electron populations 1.69968 1.06032 1.26485 1.51067 1.25027 0.94834 0.99192 0.95452 0.86625 0.79873 0.83624 0.78054 1.20728 1.21240 1.19908 1.21297 0.93003 0.91259 1.50271 0.92814 1.19076 0.93999 0.91278 0.97129 1.21611 0.99101 0.94155 0.99946 1.21614 0.97756 0.93199 1.02256 1.22333 0.95932 0.88351 1.00463 1.61720 1.27275 1.02040 1.32665 1.21809 0.96061 0.95223 0.93035 1.21344 1.00415 0.93662 0.99553 1.23571 0.77246 0.87159 0.79547 1.90726 1.55617 1.48967 1.45562 1.84560 1.66604 1.48774 1.32966 1.22333 0.92132 1.03539 0.91832 1.23058 0.94643 0.98051 1.03653 1.23051 1.04299 0.91531 1.02721 0.93070 0.96752 0.96635 0.93557 0.93784 0.92279 0.91819 0.90928 0.94838 0.93789 0.89818 0.87386 0.86604 0.73255 0.89375 0.87953 0.88719 0.88939 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.11 -1.85 5.18 -26.73 -0.14 -1.99 16 12 C 0.06 0.77 4.78 -3.82 -0.02 0.75 16 13 N -0.51 -6.27 4.57 -226.66 -1.04 -7.31 16 14 C 0.07 0.72 4.30 -3.83 -0.02 0.70 16 15 C -0.11 -1.03 5.85 -27.88 -0.16 -1.20 16 16 C 0.48 4.71 8.33 36.01 0.30 5.01 16 17 O -0.52 -6.61 16.67 -18.75 -0.31 -6.92 16 18 O -0.52 -3.92 13.42 -39.26 -0.53 -4.45 16 19 C 0.01 0.12 4.18 -67.72 -0.28 -0.16 16 20 C -0.16 -1.79 10.00 -26.74 -0.27 -2.06 16 21 C -0.18 -1.80 9.55 -26.74 -0.26 -2.06 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.92 6.72 -51.93 -0.35 0.58 16 30 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.04 0.51 8.00 -51.92 -0.42 0.09 16 32 H 0.08 0.92 6.60 -51.93 -0.34 0.58 16 33 H 0.11 0.94 6.96 -51.93 -0.36 0.58 16 34 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.41 1.38 9.10 45.56 0.41 1.80 16 36 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -32.71 333.31 -8.67 -41.38 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.01 Total: -1.37 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.53 Total: -16.67 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.30 Total: -33.81 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.84 Total: -11.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.71 -8.67 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395349361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.029 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds