Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99925 * 2 1 4 4 H 1.48504 * 109.47121 * 270.00137 * 3 2 1 5 5 H 1.48498 * 109.46798 * 29.99951 * 3 2 1 6 6 H 1.48498 * 109.47193 * 150.00313 * 3 2 1 7 7 C 1.37874 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00525 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46634 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46554 * 180.02562 * 12 11 10 14 14 C 1.46899 * 110.99659 * 190.00258 * 13 12 11 15 15 C 1.52997 * 109.47426 * 75.87681 * 14 13 12 16 16 C 1.50700 * 109.46984 * 174.90388 * 15 14 13 17 17 O 1.20829 * 119.99942 * 0.02562 * 16 15 14 18 18 O 1.34232 * 120.00166 * 179.97438 * 16 15 14 19 19 C 1.46895 * 111.00265 * 66.04245 * 13 12 11 20 20 C 1.52994 * 117.50153 * 254.28090 * 19 13 12 21 21 C 1.52995 * 60.00106 * 252.51024 * 20 19 13 22 22 H 0.97005 * 120.00201 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47356 * 59.99947 * 9 7 2 24 24 H 1.09006 * 109.47316 * 300.00085 * 9 7 2 25 25 H 1.09003 * 109.46981 * 59.99580 * 10 9 7 26 26 H 1.09006 * 109.46803 * 300.00262 * 10 9 7 27 27 H 1.08993 * 109.46790 * 60.00055 * 11 10 9 28 28 H 1.08996 * 109.46871 * 299.99920 * 11 10 9 29 29 H 1.08992 * 109.47139 * 60.00105 * 12 11 10 30 30 H 1.08997 * 109.46893 * 299.99782 * 12 11 10 31 31 H 1.09007 * 109.46714 * 315.87527 * 14 13 12 32 32 H 1.09000 * 109.47132 * 195.88309 * 14 13 12 33 33 H 1.08999 * 109.47524 * 294.90890 * 15 14 13 34 34 H 1.08997 * 109.47051 * 54.90715 * 15 14 13 35 35 H 0.96694 * 117.00151 * 180.02562 * 18 16 15 36 36 H 1.09002 * 115.55189 * 39.99284 * 19 13 12 37 37 H 1.08998 * 117.50179 * 0.02562 * 20 19 13 38 38 H 1.09005 * 117.49676 * 145.01835 * 20 19 13 39 39 H 1.09003 * 117.50134 * 252.50514 * 21 20 19 40 40 H 1.09006 * 117.51680 * 107.47983 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0018 14 6 2.6464 -8.5534 0.2370 15 6 3.0210 -8.6028 1.7196 16 6 3.8483 -9.8335 1.9880 17 8 4.1116 -10.5929 1.0858 18 8 4.2934 -10.0855 3.2290 19 6 0.9960 -7.5993 -1.2558 20 6 -0.5217 -7.4118 -1.2093 21 6 0.0715 -8.8136 -1.3633 22 1 -0.4851 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8721 -3.6043 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.8541 -5.0445 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 3.1007 -6.0923 0.8898 30 1 3.1019 -6.0921 -0.8901 31 1 3.5487 -8.4288 -0.3618 32 1 2.1497 -9.4823 -0.0434 33 1 3.5968 -7.7143 1.9787 34 1 2.1137 -8.6363 2.3226 35 1 4.8205 -10.8868 3.3520 36 1 1.5153 -7.2806 -2.1597 37 1 -0.9680 -7.1566 -0.2482 38 1 -1.0012 -6.9694 -2.0825 39 1 -0.0177 -9.2936 -2.3379 40 1 0.0157 -9.4813 -0.5035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395349361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = -108.508174 kcal Electronic energy + Delta-G solvation = -18604.265476 eV Core-core repulsion = 15611.082669 eV Total energy + Delta-G solvation = -2993.182807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27900 -39.68616 -37.14589 -36.62657 -35.56263 -34.26441 -32.00816 -29.74359 -26.67192 -24.96770 -23.51091 -23.14148 -21.92336 -21.59875 -20.94812 -19.07364 -18.42746 -17.74370 -17.27266 -16.86107 -16.47252 -16.45977 -15.55178 -15.41726 -15.05342 -14.41428 -14.16152 -13.99207 -13.80687 -13.47755 -13.10685 -12.87938 -12.80736 -12.54793 -12.48989 -12.31471 -12.21099 -12.11102 -11.82901 -11.65059 -11.45730 -11.27998 -11.17192 -11.04553 -10.89166 -10.53358 -9.34386 -8.17974 -6.29257 1.21237 1.40671 1.42140 1.53335 2.02680 2.42290 2.91909 2.93028 3.14788 3.77818 3.98724 4.04763 4.08117 4.17883 4.20046 4.34173 4.50445 4.56924 4.62380 4.65079 4.77425 4.82415 4.83995 4.89771 4.96791 5.03567 5.13319 5.28685 5.31860 5.34495 5.42111 5.59335 5.63090 5.81814 5.89943 6.05861 6.14790 6.28613 6.88666 7.00961 7.40038 8.93817 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.003654 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.780615 B = 7661.544923 C = 8588.472710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.098 4.098 11 C -0.097 4.097 12 C 0.065 3.935 13 N -0.514 5.514 14 C 0.071 3.929 15 C -0.109 4.109 16 C 0.491 3.509 17 O -0.554 6.554 18 O -0.513 6.513 19 C -0.007 4.007 20 C -0.166 4.166 21 C -0.157 4.157 22 H 0.263 0.737 23 H -0.013 1.013 24 H -0.010 1.010 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.428 0.572 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -20.930 2.593 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.136 4.136 11 C -0.135 4.135 12 C -0.063 4.063 13 N -0.238 5.238 14 C -0.056 4.056 15 C -0.147 4.147 16 C 0.335 3.665 17 O -0.445 6.445 18 O -0.327 6.327 19 C -0.116 4.116 20 C -0.204 4.204 21 C -0.194 4.194 22 H 0.072 0.928 23 H 0.005 0.995 24 H 0.008 0.992 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.289 0.711 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.786 -20.673 2.697 21.391 hybrid contribution 0.988 0.575 -0.664 1.322 sum 5.775 -20.098 2.033 21.010 Atomic orbital electron populations 1.70105 1.07830 1.27706 1.51824 1.26003 0.95775 1.03403 0.94799 0.85457 0.78722 0.78457 0.78470 1.19835 1.20720 1.18638 1.21760 0.93566 0.92576 1.50322 0.92211 1.18999 0.94477 0.93226 0.94537 1.21418 0.97973 0.93811 1.00377 1.21402 0.97867 0.92786 1.01491 1.22149 0.94994 0.87880 1.01227 1.61675 1.27360 1.01837 1.32882 1.21770 0.95370 0.94392 0.94106 1.21311 1.00956 0.93906 0.98522 1.23549 0.76650 0.86709 0.79610 1.90721 1.57026 1.50118 1.46641 1.84516 1.66593 1.49960 1.31613 1.22424 0.92210 1.05300 0.91619 1.23052 0.94454 0.99624 1.03252 1.23096 1.01848 0.90714 1.03761 0.92817 0.99456 0.99169 0.92791 0.93492 0.93151 0.92537 0.89487 0.94803 0.94456 0.89859 0.86524 0.85643 0.71063 0.89831 0.88998 0.88528 0.87359 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.99 5.15 30.60 0.16 -3.83 16 11 C -0.10 -3.26 5.18 30.60 0.16 -3.10 16 12 C 0.06 1.69 4.78 86.30 0.41 2.10 16 13 N -0.51 -11.93 4.57 -871.00 -3.98 -15.91 16 14 C 0.07 1.43 4.30 86.30 0.37 1.80 16 15 C -0.11 -1.80 5.85 29.85 0.17 -1.62 16 16 C 0.49 8.71 8.33 71.24 0.59 9.30 16 17 O -0.55 -13.37 16.67 21.95 0.37 -13.01 16 18 O -0.51 -6.62 13.42 -51.43 -0.69 -7.31 16 19 C -0.01 -0.16 4.18 44.91 0.19 0.03 16 20 C -0.17 -3.74 10.00 30.59 0.31 -3.43 16 21 C -0.16 -2.94 9.55 30.59 0.29 -2.64 16 22 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 23 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 24 H -0.01 -0.59 8.14 -2.38 -0.02 -0.60 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.05 1.76 7.02 -2.39 -0.02 1.74 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.03 6.72 -2.39 -0.02 2.01 16 30 H 0.03 0.89 8.09 -2.39 -0.02 0.87 16 31 H 0.04 0.81 8.00 -2.38 -0.02 0.79 16 32 H 0.08 1.70 6.60 -2.39 -0.02 1.68 16 33 H 0.12 1.75 6.96 -2.39 -0.02 1.73 16 34 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.43 1.93 9.10 -74.06 -0.67 1.25 16 36 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 1.81 7.72 -2.38 -0.02 1.79 16 Total: -1.00 -70.12 333.31 1.84 -68.27 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.34 Total: 9.58 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.50 Total: -30.85 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -3.69 Total: -73.34 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.32 Total: -20.31 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.12 1.84 -68.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395349361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.234 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds