Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 O 1.45198 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.34636 * 116.99855 * 180.02562 * 4 3 2 6 6 O 1.21509 * 120.00384 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00274 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63395 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 126.29715 * 8 7 5 10 10 C 1.53346 * 109.14901 * 54.57640 * 9 8 7 11 11 C 1.53004 * 109.41904 * 178.67276 * 10 9 8 12 12 C 1.50701 * 109.47085 * 295.13082 * 11 10 9 13 13 H 1.07998 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99472 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00682 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99519 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47056 * 90.00284 * 16 14 12 18 18 H 1.48503 * 109.47155 * 209.99821 * 16 14 12 19 19 H 1.48497 * 109.47425 * 330.00030 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 10 9 8 21 21 C 1.46933 * 120.62602 * 359.97266 * 7 5 4 22 22 H 1.08994 * 109.47280 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47042 * 60.00194 * 1 2 3 24 24 H 1.09007 * 109.47005 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46821 * 240.00215 * 2 1 3 26 26 H 1.08998 * 109.46726 * 120.00206 * 2 1 3 27 27 H 1.09002 * 109.46530 * 60.00104 * 3 2 1 28 28 H 1.08996 * 109.47037 * 300.00232 * 3 2 1 29 29 H 1.09002 * 109.58751 * 246.15665 * 8 7 5 30 30 H 1.08996 * 109.58750 * 6.43850 * 8 7 5 31 31 H 1.08997 * 109.49914 * 174.65962 * 9 8 7 32 32 H 1.09002 * 109.49585 * 294.75599 * 9 8 7 33 33 H 1.09001 * 109.42242 * 58.75065 * 10 9 8 34 34 H 1.09001 * 109.46592 * 55.13132 * 11 10 9 35 35 H 1.08997 * 109.47133 * 175.12697 * 11 10 9 36 36 H 0.97001 * 120.00836 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.50232 * 301.42239 * 20 10 9 38 38 H 1.09007 * 109.52628 * 181.33900 * 20 10 9 39 39 H 1.08994 * 109.58580 * 353.42544 * 21 7 5 40 40 H 1.09006 * 109.57831 * 113.70037 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1032 2.6421 0.0012 6 8 3.4414 3.6612 0.0017 7 7 5.4491 2.7128 0.0013 8 6 6.1305 4.0144 0.0014 9 6 7.1206 4.0559 1.1696 10 6 8.0629 2.8499 1.0735 11 6 9.0758 2.9032 2.2190 12 6 9.9562 4.1153 2.0550 13 1 9.8083 4.7808 1.2174 14 6 10.9504 4.3745 2.9745 15 7 11.1308 3.5639 3.9941 16 14 12.0421 5.8766 2.7709 17 1 11.4315 7.0316 3.4767 18 1 13.3819 5.5965 3.3470 19 1 12.1809 6.1957 1.3273 20 6 7.2520 1.5557 1.1698 21 6 6.2629 1.4894 0.0013 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9562 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 6.6678 4.1457 -0.9379 30 1 5.3959 4.8114 0.1166 31 1 7.6992 4.9785 1.1235 32 1 6.5737 4.0156 2.1116 33 1 8.5908 2.8775 0.1203 34 1 8.5462 2.9646 3.1697 35 1 9.6902 2.0030 2.2028 36 1 11.8305 3.7460 4.6408 37 1 6.7041 1.5388 2.1118 38 1 7.9254 0.6996 1.1252 39 1 5.6159 0.6202 0.1188 40 1 6.8090 1.4139 -0.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399469972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -110.529419 kcal Electronic energy + Delta-G solvation = -19215.752362 eV Core-core repulsion = 16222.481908 eV Total energy + Delta-G solvation = -2993.270454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48666 -38.17568 -36.38412 -34.22034 -33.83509 -32.08900 -30.73608 -28.24284 -26.74214 -24.60068 -22.98574 -22.11927 -21.71344 -20.45301 -19.19710 -17.77165 -16.90822 -16.70474 -16.24029 -15.09366 -14.79810 -14.52594 -14.17495 -13.78189 -13.61558 -13.25678 -12.93599 -12.64637 -12.61976 -12.47034 -12.11959 -11.86703 -11.38863 -11.36702 -11.18304 -11.02600 -10.77119 -10.69401 -10.52573 -10.45281 -10.37368 -10.07980 -9.63989 -9.28292 -8.97424 -8.43646 -8.34799 -5.99850 -4.01771 2.23736 2.95659 3.31754 3.38484 3.41021 3.92068 4.45723 4.64816 4.65741 4.95884 5.17049 5.19840 5.24444 5.34645 5.35609 5.39434 5.42483 5.57314 5.65060 5.67717 5.78586 5.81072 5.87789 5.97705 6.08746 6.31030 6.34050 6.39923 6.57236 6.64696 6.97465 7.00558 7.10963 7.52542 7.66577 7.81169 7.99784 8.41404 8.42356 9.04736 9.62173 11.11440 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.047691 B = 0.003793 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.968236 B = 7379.589450 C = 7661.142173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.086 3.914 4 O -0.371 6.371 5 C 0.648 3.352 6 O -0.582 6.582 7 N -0.587 5.587 8 C 0.124 3.876 9 C -0.119 4.119 10 C -0.082 4.082 11 C 0.028 3.972 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.130 4.130 21 C 0.112 3.888 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 -6.962 -8.712 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.011 3.989 4 O -0.285 6.285 5 C 0.403 3.597 6 O -0.473 6.473 7 N -0.326 5.326 8 C 0.003 3.997 9 C -0.157 4.157 10 C -0.101 4.101 11 C -0.009 4.009 12 C -0.555 4.555 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.168 4.168 21 C -0.010 4.010 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.332 -6.712 -8.563 19.624 hybrid contribution 0.677 0.859 0.060 1.095 sum -15.655 -5.853 -8.503 18.752 Atomic orbital electron populations 1.21681 0.94152 1.02446 1.02361 1.21528 0.96040 0.94900 1.03748 1.22988 0.75208 0.98097 1.02628 1.86209 1.23573 1.31506 1.87231 1.18012 0.83354 0.81825 0.76544 1.90952 1.64389 1.34947 1.56966 1.47066 1.01495 1.09265 1.74823 1.21855 0.95361 0.82616 0.99879 1.21993 0.96243 1.00922 0.96543 1.21265 0.95704 0.91544 1.01543 1.19124 0.92564 0.97008 0.92240 1.21244 1.15406 1.09345 1.09468 0.92552 1.25019 0.97519 0.96550 0.95384 1.69956 1.32983 1.37184 1.13413 0.86643 0.80044 0.83324 0.78283 1.20717 1.21317 1.19890 1.22047 0.97485 1.00005 0.97313 1.21820 0.93787 0.85768 0.99647 0.92255 0.92338 0.91703 0.90836 0.90714 0.91323 0.91414 0.91368 0.89383 0.89380 0.92227 0.92209 0.96632 0.96559 0.93051 0.91983 0.90905 0.89823 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -1.01 6.31 -26.73 -0.17 -1.18 16 3 C 0.09 0.95 5.47 37.16 0.20 1.15 16 4 O -0.37 -5.23 8.86 -40.31 -0.36 -5.58 16 5 C 0.65 10.73 8.43 54.06 0.46 11.19 16 6 O -0.58 -11.02 15.54 -19.28 -0.30 -11.32 16 7 N -0.59 -9.25 2.97 -178.53 -0.53 -9.78 16 8 C 0.12 1.96 6.42 -3.71 -0.02 1.94 16 9 C -0.12 -2.16 5.21 -26.45 -0.14 -2.30 16 10 C -0.08 -1.58 2.10 -90.42 -0.19 -1.77 16 11 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 12 C -0.52 -14.03 8.39 -34.44 -0.29 -14.32 16 13 H 0.06 1.48 7.06 -52.49 -0.37 1.10 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.63 13.28 55.43 0.74 -25.89 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.13 -2.11 5.36 -26.59 -0.14 -2.25 16 21 C 0.11 1.57 6.45 -3.69 -0.02 1.54 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 31 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 39 H 0.08 1.06 6.93 -51.93 -0.36 0.70 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -31.25 323.84 -7.69 -38.94 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -6.93 Total: -3.08 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.17 Total: -4.52 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.21 Total: -35.67 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.66 Total: -16.91 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.25 -7.69 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399469972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.586 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds