Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 O 1.45198 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.34636 * 116.99855 * 180.02562 * 4 3 2 6 6 O 1.21509 * 120.00384 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00274 * 180.02562 * 5 4 3 8 8 C 1.46919 * 120.63395 * 179.97438 * 7 5 4 9 9 C 1.53195 * 108.89273 * 126.29715 * 8 7 5 10 10 C 1.53346 * 109.14901 * 54.57640 * 9 8 7 11 11 C 1.53004 * 109.41904 * 178.67276 * 10 9 8 12 12 C 1.50701 * 109.47085 * 295.13082 * 11 10 9 13 13 H 1.07998 * 120.00293 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99472 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00682 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99519 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47056 * 90.00284 * 16 14 12 18 18 H 1.48503 * 109.47155 * 209.99821 * 16 14 12 19 19 H 1.48497 * 109.47425 * 330.00030 * 16 14 12 20 20 C 1.53034 * 109.61010 * 298.71225 * 10 9 8 21 21 C 1.46933 * 120.62602 * 359.97266 * 7 5 4 22 22 H 1.08994 * 109.47280 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47042 * 60.00194 * 1 2 3 24 24 H 1.09007 * 109.47005 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46821 * 240.00215 * 2 1 3 26 26 H 1.08998 * 109.46726 * 120.00206 * 2 1 3 27 27 H 1.09002 * 109.46530 * 60.00104 * 3 2 1 28 28 H 1.08996 * 109.47037 * 300.00232 * 3 2 1 29 29 H 1.09002 * 109.58751 * 246.15665 * 8 7 5 30 30 H 1.08996 * 109.58750 * 6.43850 * 8 7 5 31 31 H 1.08997 * 109.49914 * 174.65962 * 9 8 7 32 32 H 1.09002 * 109.49585 * 294.75599 * 9 8 7 33 33 H 1.09001 * 109.42242 * 58.75065 * 10 9 8 34 34 H 1.09001 * 109.46592 * 55.13132 * 11 10 9 35 35 H 1.08997 * 109.47133 * 175.12697 * 11 10 9 36 36 H 0.97001 * 120.00836 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.50232 * 301.42239 * 20 10 9 38 38 H 1.09007 * 109.52628 * 181.33900 * 20 10 9 39 39 H 1.08994 * 109.58580 * 353.42544 * 21 7 5 40 40 H 1.09006 * 109.57831 * 113.70037 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4920 1.4425 0.0006 5 6 4.1032 2.6421 0.0012 6 8 3.4414 3.6612 0.0017 7 7 5.4491 2.7128 0.0013 8 6 6.1305 4.0144 0.0014 9 6 7.1206 4.0559 1.1696 10 6 8.0629 2.8499 1.0735 11 6 9.0758 2.9032 2.2190 12 6 9.9562 4.1153 2.0550 13 1 9.8083 4.7808 1.2174 14 6 10.9504 4.3745 2.9745 15 7 11.1308 3.5639 3.9941 16 14 12.0421 5.8766 2.7709 17 1 11.4315 7.0316 3.4767 18 1 13.3819 5.5965 3.3470 19 1 12.1809 6.1957 1.3273 20 6 7.2520 1.5557 1.1698 21 6 6.2629 1.4894 0.0013 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9562 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 6.6678 4.1457 -0.9379 30 1 5.3959 4.8114 0.1166 31 1 7.6992 4.9785 1.1235 32 1 6.5737 4.0156 2.1116 33 1 8.5908 2.8775 0.1203 34 1 8.5462 2.9646 3.1697 35 1 9.6902 2.0030 2.2028 36 1 11.8305 3.7460 4.6408 37 1 6.7041 1.5388 2.1118 38 1 7.9254 0.6996 1.1252 39 1 5.6159 0.6202 0.1188 40 1 6.8090 1.4139 -0.9391 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399469972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -128.253242 kcal Electronic energy + Delta-G solvation = -19216.520925 eV Core-core repulsion = 16222.481908 eV Total energy + Delta-G solvation = -2994.039017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.71778 -39.47755 -37.62133 -35.78852 -34.76579 -33.92963 -32.04535 -29.96302 -27.67426 -26.26886 -24.31478 -23.67693 -22.47714 -21.87240 -20.61092 -19.06275 -18.35073 -18.09363 -17.77324 -16.53978 -16.02469 -15.89290 -15.37025 -15.09495 -14.85587 -14.73975 -14.38773 -13.96083 -13.71696 -13.49259 -13.42175 -13.04292 -13.01184 -12.72165 -12.50474 -12.33238 -12.16119 -12.11603 -12.04455 -11.85064 -11.60848 -11.45009 -11.31904 -11.04450 -10.82819 -10.51052 -9.75533 -8.15548 -6.24552 1.09757 1.42211 1.42496 1.53207 1.68557 2.43540 2.83250 3.18346 3.87945 3.93319 3.97494 4.00994 4.06492 4.17506 4.30077 4.40246 4.42312 4.53856 4.58957 4.65756 4.76329 4.83569 4.88116 4.96504 5.05018 5.11332 5.18155 5.23382 5.27361 5.33706 5.38435 5.45288 5.54068 5.58802 5.82108 5.91548 6.27987 6.31629 6.92499 7.16997 7.44093 8.96351 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.047691 B = 0.003793 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.968236 B = 7379.589450 C = 7661.142173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.078 3.922 4 O -0.368 6.368 5 C 0.646 3.354 6 O -0.611 6.611 7 N -0.589 5.589 8 C 0.132 3.868 9 C -0.112 4.112 10 C -0.074 4.074 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.937 5.937 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.260 1.260 20 C -0.124 4.124 21 C 0.119 3.881 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.068 0.932 34 H -0.017 1.017 35 H -0.008 1.008 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 -7.202 -10.474 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.004 3.996 4 O -0.282 6.282 5 C 0.401 3.599 6 O -0.504 6.504 7 N -0.329 5.329 8 C 0.012 3.988 9 C -0.150 4.150 10 C -0.093 4.093 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.084 0.916 14 C -0.200 4.200 15 N -0.578 5.578 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.184 1.184 20 C -0.162 4.162 21 C -0.002 4.002 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.001 0.999 35 H 0.010 0.990 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.953 -6.973 -10.341 21.047 hybrid contribution 0.829 0.889 0.648 1.378 sum -16.124 -6.084 -9.692 19.772 Atomic orbital electron populations 1.21690 0.92675 1.03474 1.02574 1.21540 0.97126 0.92692 1.04109 1.23310 0.73620 1.00246 1.02418 1.86223 1.25171 1.30054 1.86770 1.18149 0.83484 0.82113 0.76132 1.90930 1.65073 1.36101 1.58268 1.47148 1.01581 1.09689 1.74471 1.21721 0.94672 0.82921 0.99526 1.21853 0.96303 0.99886 0.96950 1.21118 0.95055 0.93797 0.99316 1.19020 0.93115 0.95285 0.93039 1.21696 1.15419 1.09973 1.09462 0.91613 1.25940 0.99273 0.99674 0.95130 1.70096 1.33915 1.39293 1.14476 0.85546 0.77832 0.79409 0.78870 1.20231 1.21208 1.18433 1.21952 0.97729 0.98575 0.97978 1.21879 0.93348 0.85637 0.99354 0.92303 0.91937 0.90246 0.90129 0.90671 0.91978 0.91281 0.89085 0.89807 0.90487 0.94118 0.91329 0.99852 0.98954 0.93050 0.93391 0.89879 0.88038 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.66 6.31 30.60 0.19 -1.47 16 3 C 0.08 1.64 5.47 71.98 0.39 2.03 16 4 O -0.37 -9.76 8.86 -55.46 -0.49 -10.25 16 5 C 0.65 20.51 8.43 129.79 1.09 21.61 16 6 O -0.61 -22.71 15.54 19.81 0.31 -22.40 16 7 N -0.59 -17.49 2.97 -949.17 -2.82 -20.31 16 8 C 0.13 4.01 6.42 86.36 0.55 4.56 16 9 C -0.11 -4.04 5.21 30.78 0.16 -3.88 16 10 C -0.07 -2.83 2.10 -10.66 -0.02 -2.85 16 11 C 0.03 1.65 4.45 29.85 0.13 1.78 16 12 C -0.53 -28.87 8.39 25.60 0.21 -28.65 16 13 H 0.07 3.40 7.06 -2.91 -0.02 3.38 16 14 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 15 N -0.94 -56.90 13.28 21.45 0.28 -56.61 16 16 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 C -0.12 -3.89 5.36 30.68 0.16 -3.72 16 21 C 0.12 3.02 6.45 86.37 0.56 3.58 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 2.64 7.00 -2.39 -0.02 2.63 16 31 H 0.08 2.93 6.93 -2.39 -0.02 2.92 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.10 2.27 6.93 -2.39 -0.02 2.25 16 40 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -67.66 323.84 4.91 -62.74 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.99 Total: 8.49 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.62 Total: -7.56 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -2.54 Total: -76.93 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.18 Total: -32.65 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.66 4.91 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399469972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.510 kcal (2) G-P(sol) polarization free energy of solvation -67.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds