Wall clock time and date at job start Mon Mar 30 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 H 1.09008 * 109.47006 * 59.45212 * 3 2 1 5 5 C 1.50696 * 109.47126 * 179.44843 * 3 2 1 6 6 H 1.08002 * 120.00118 * 124.71859 * 5 3 2 7 7 C 1.37886 * 120.00197 * 304.71744 * 5 3 2 8 8 N 1.31512 * 119.99571 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47221 * 90.00210 * 9 7 5 11 11 H 1.48496 * 109.47256 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47304 * 329.99988 * 9 7 5 13 13 N 1.46902 * 109.47463 * 299.45188 * 3 2 1 14 14 C 1.46893 * 110.99546 * 308.95009 * 13 3 2 15 15 C 1.52461 * 108.79018 * 167.07378 * 14 13 3 16 16 C 1.54745 * 109.27853 * 57.46801 * 15 14 13 17 17 H 1.08996 * 114.19632 * 196.09553 * 16 15 14 18 18 C 1.54971 * 105.19939 * 322.30822 * 16 15 14 19 19 C 1.53928 * 110.92241 * 81.37988 * 18 16 15 20 20 C 1.54966 * 111.93304 * 359.82424 * 19 18 16 21 21 H 1.09002 * 114.36377 * 152.33081 * 20 19 18 22 22 C 1.52457 * 108.79286 * 290.47612 * 14 13 3 23 23 S 1.84399 * 101.87116 * 28.39907 * 20 19 18 24 24 H 1.09000 * 109.47222 * 185.06750 * 1 2 3 25 25 H 1.09000 * 109.47194 * 305.07511 * 1 2 3 26 26 H 1.09001 * 109.46737 * 65.07080 * 1 2 3 27 27 H 1.09005 * 109.46850 * 240.00146 * 2 1 3 28 28 H 1.09000 * 109.46533 * 120.00314 * 2 1 3 29 29 H 0.97002 * 119.99562 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99893 * 72.90439 * 13 3 2 31 31 H 1.09000 * 108.66593 * 48.77928 * 14 13 3 32 32 H 1.09002 * 109.50577 * 177.40891 * 15 14 13 33 33 H 1.09006 * 109.50615 * 297.49203 * 15 14 13 34 34 H 1.09003 * 109.03661 * 201.67978 * 18 16 15 35 35 H 1.08998 * 109.03829 * 320.48791 * 18 16 15 36 36 H 1.09004 * 108.84867 * 239.21959 * 19 18 16 37 37 H 1.09000 * 108.91153 * 120.47384 * 19 18 16 38 38 H 1.08997 * 109.50202 * 62.47818 * 22 14 13 39 39 H 1.09008 * 109.50475 * 182.58994 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6687 1.9591 0.8851 5 6 3.5470 1.4424 0.0137 6 1 4.0940 1.9726 -0.7519 7 6 4.2275 0.7655 1.0036 8 7 3.5614 0.1194 1.9355 9 14 6.0953 0.7649 1.0201 10 1 6.5837 1.9183 1.8179 11 1 6.5846 -0.4992 1.6267 12 1 6.6027 0.8750 -0.3712 13 7 1.5613 2.1312 -1.2060 14 6 1.8612 1.3492 -2.4128 15 6 1.0758 1.9311 -3.5828 16 6 1.4449 3.4241 -3.7537 17 1 0.7465 3.9891 -4.3711 18 6 1.6100 3.9694 -2.3126 19 6 3.0005 3.6239 -1.7500 20 6 3.8543 2.8253 -2.7672 21 1 4.9302 2.9581 -2.6534 22 6 3.3680 1.3614 -2.6441 23 16 3.1802 3.4195 -4.3774 24 1 -0.3634 -1.0236 0.0908 25 1 -0.3633 0.5905 0.8410 26 1 -0.3633 0.4332 -0.9319 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0401 -0.3565 2.6321 30 1 0.5745 2.3311 -1.1405 31 1 1.5391 0.3205 -2.2508 32 1 1.3249 1.3880 -4.4944 33 1 0.0076 1.8401 -3.3853 34 1 1.4875 5.0525 -2.3260 35 1 0.8384 3.5345 -1.6773 36 1 2.8764 3.0289 -0.8452 37 1 3.5196 4.5487 -1.4985 38 1 3.8691 0.8810 -1.8038 39 1 3.5996 0.8226 -3.5630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403616983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:54 Heat of formation + Delta-G solvation = 113.234509 kcal Electronic energy + Delta-G solvation = -19210.142478 eV Core-core repulsion = 16669.328027 eV Total energy + Delta-G solvation = -2540.814451 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40136 -35.04308 -32.40117 -31.42950 -30.65146 -29.89615 -26.72790 -23.56778 -23.51673 -22.63343 -20.34936 -19.83424 -18.30455 -17.02892 -16.49280 -15.29045 -14.84475 -14.35758 -13.62172 -13.36538 -13.12466 -12.79085 -12.62852 -12.52706 -12.35258 -12.00763 -11.53479 -11.34821 -11.18885 -10.95996 -10.87819 -10.63557 -10.32744 -10.11902 -10.02127 -9.79344 -9.61737 -9.46203 -8.93951 -8.81352 -8.50114 -8.36709 -7.06218 -6.52913 -6.11477 -4.14048 2.59768 2.97717 3.24079 3.31981 3.34582 4.31795 4.98984 5.14964 5.22826 5.38835 5.39896 5.63220 5.72188 5.91048 5.94812 6.03982 6.06191 6.07780 6.25803 6.31685 6.33202 6.53267 6.61898 6.69586 6.71452 6.79932 6.93337 6.96279 7.12184 7.22057 7.32383 7.47649 7.65416 7.76204 7.96123 8.05950 8.28336 8.58059 8.87591 9.48205 10.91901 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.010526 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.078023 B = 2659.412678 C = 3443.339504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C 0.189 3.811 4 H 0.039 0.961 5 C -0.524 4.524 6 H 0.095 0.905 7 C 0.062 3.938 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.648 5.648 14 C 0.085 3.915 15 C -0.114 4.114 16 C -0.023 4.023 17 H 0.103 0.897 18 C -0.099 4.099 19 C -0.139 4.139 20 C 0.001 3.999 21 H 0.103 0.897 22 C -0.130 4.130 23 S -0.377 6.377 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.106 0.894 29 H 0.260 0.740 30 H 0.308 0.692 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.111 0.889 36 H 0.195 0.805 37 H 0.013 0.987 38 H 0.134 0.866 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 2.261 -5.998 7.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.082 3.918 4 H 0.056 0.944 5 C -0.562 4.562 6 H 0.112 0.888 7 C -0.140 4.140 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.283 5.283 14 C -0.024 4.024 15 C -0.154 4.154 16 C -0.151 4.151 17 H 0.121 0.879 18 C -0.138 4.138 19 C -0.177 4.177 20 C -0.127 4.127 21 H 0.121 0.879 22 C -0.169 4.169 23 S -0.150 6.150 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.129 0.871 36 H 0.210 0.790 37 H 0.031 0.969 38 H 0.151 0.849 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.648 2.828 -6.992 8.378 hybrid contribution -0.117 -1.007 0.898 1.354 sum -3.766 1.821 -6.094 7.391 Atomic orbital electron populations 1.21878 0.99751 0.99618 0.99510 1.22299 0.91215 1.02548 1.03707 1.19520 0.95286 0.88968 0.88074 0.94361 1.21767 0.90943 1.31869 1.11591 0.88756 1.24993 0.98228 0.95339 0.95436 1.69828 1.35067 1.33218 1.14183 0.86658 0.85840 0.77483 0.78547 1.20573 1.21392 1.19621 1.64365 1.17171 1.43041 1.03674 1.21216 0.95518 0.96132 0.89574 1.22260 0.99143 0.94502 0.99483 1.24491 0.92675 0.98729 0.99228 0.87900 1.23039 1.01627 0.96940 0.92218 1.24055 0.90473 0.98439 1.04723 1.24461 1.00598 0.98669 0.88985 0.87920 1.22757 0.95751 0.94773 1.03588 1.87675 1.10789 1.89851 1.26720 0.94703 0.93714 0.94967 0.94093 0.87637 0.92950 0.87047 0.93179 0.91379 0.92186 0.95601 0.87144 0.78950 0.96854 0.84864 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.37 37.16 0.35 -2.27 16 2 C -0.16 -3.29 4.63 -26.73 -0.12 -3.41 16 3 C 0.19 3.95 2.19 -68.87 -0.15 3.79 16 4 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 5 C -0.52 -12.07 5.09 -34.44 -0.18 -12.25 16 6 H 0.10 2.13 3.19 -52.49 -0.17 1.96 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.88 -22.79 10.98 55.43 0.61 -22.18 16 9 Si 0.89 19.67 29.54 -169.99 -5.02 14.64 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.65 -11.24 0.93 -101.54 -0.09 -11.34 16 14 C 0.09 1.45 2.08 -68.27 -0.14 1.31 16 15 C -0.11 -1.72 5.16 -26.09 -0.13 -1.86 16 16 C -0.02 -0.36 4.83 -24.77 -0.12 -0.48 16 17 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 18 C -0.10 -1.61 5.24 -25.21 -0.13 -1.75 16 19 C -0.14 -2.59 4.70 -25.21 -0.12 -2.71 16 20 C 0.00 0.01 3.97 -24.78 -0.10 -0.09 16 21 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 22 C -0.13 -2.43 4.73 -26.09 -0.12 -2.56 16 23 S -0.38 -6.82 21.99 -107.50 -2.36 -9.19 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.50 6.84 -51.93 -0.36 0.15 16 27 H 0.04 0.87 6.04 -51.93 -0.31 0.55 16 28 H 0.11 2.55 5.69 -51.93 -0.30 2.25 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.31 4.87 5.63 -39.29 -0.22 4.65 16 31 H 0.05 0.91 5.18 -51.93 -0.27 0.64 16 32 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 1.71 4.19 -83.08 -0.35 1.36 16 36 H 0.19 3.91 2.02 -86.36 -0.17 3.74 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.13 2.81 4.51 -51.93 -0.23 2.58 16 39 H 0.05 0.85 8.03 -51.92 -0.42 0.44 16 LS Contribution 274.85 15.07 4.14 4.14 Total: -1.00 -23.88 274.85 -9.52 -33.40 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.73 Total: 11.33 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -1.07 Total: -20.82 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.51 Total: -33.52 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -6.82 SS G_CDS: -2.36 Total: -9.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -23.88 -9.52 -33.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403616983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.639 kcal (2) G-P(sol) polarization free energy of solvation -23.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds