Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 H 1.09008 * 109.47006 * 59.45212 * 3 2 1 5 5 C 1.50696 * 109.47126 * 179.44843 * 3 2 1 6 6 H 1.08002 * 120.00118 * 124.71859 * 5 3 2 7 7 C 1.37886 * 120.00197 * 304.71744 * 5 3 2 8 8 N 1.31512 * 119.99571 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00055 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47221 * 90.00210 * 9 7 5 11 11 H 1.48496 * 109.47256 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47304 * 329.99988 * 9 7 5 13 13 N 1.46902 * 109.47463 * 299.45188 * 3 2 1 14 14 C 1.46893 * 110.99546 * 308.95009 * 13 3 2 15 15 C 1.52461 * 108.79018 * 167.07378 * 14 13 3 16 16 C 1.54745 * 109.27853 * 57.46801 * 15 14 13 17 17 H 1.08996 * 114.19632 * 196.09553 * 16 15 14 18 18 C 1.54971 * 105.19939 * 322.30822 * 16 15 14 19 19 C 1.53928 * 110.92241 * 81.37988 * 18 16 15 20 20 C 1.54966 * 111.93304 * 359.82424 * 19 18 16 21 21 H 1.09002 * 114.36377 * 152.33081 * 20 19 18 22 22 C 1.52457 * 108.79286 * 290.47612 * 14 13 3 23 23 S 1.84399 * 101.87116 * 28.39907 * 20 19 18 24 24 H 1.09000 * 109.47222 * 185.06750 * 1 2 3 25 25 H 1.09000 * 109.47194 * 305.07511 * 1 2 3 26 26 H 1.09001 * 109.46737 * 65.07080 * 1 2 3 27 27 H 1.09005 * 109.46850 * 240.00146 * 2 1 3 28 28 H 1.09000 * 109.46533 * 120.00314 * 2 1 3 29 29 H 0.97002 * 119.99562 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99893 * 72.90439 * 13 3 2 31 31 H 1.09000 * 108.66593 * 48.77928 * 14 13 3 32 32 H 1.09002 * 109.50577 * 177.40891 * 15 14 13 33 33 H 1.09006 * 109.50615 * 297.49203 * 15 14 13 34 34 H 1.09003 * 109.03661 * 201.67978 * 18 16 15 35 35 H 1.08998 * 109.03829 * 320.48791 * 18 16 15 36 36 H 1.09004 * 108.84867 * 239.21959 * 19 18 16 37 37 H 1.09000 * 108.91153 * 120.47384 * 19 18 16 38 38 H 1.08997 * 109.50202 * 62.47818 * 22 14 13 39 39 H 1.09008 * 109.50475 * 182.58994 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6687 1.9591 0.8851 5 6 3.5470 1.4424 0.0137 6 1 4.0940 1.9726 -0.7519 7 6 4.2275 0.7655 1.0036 8 7 3.5614 0.1194 1.9355 9 14 6.0953 0.7649 1.0201 10 1 6.5837 1.9183 1.8179 11 1 6.5846 -0.4992 1.6267 12 1 6.6027 0.8750 -0.3712 13 7 1.5613 2.1312 -1.2060 14 6 1.8612 1.3492 -2.4128 15 6 1.0758 1.9311 -3.5828 16 6 1.4449 3.4241 -3.7537 17 1 0.7465 3.9891 -4.3711 18 6 1.6100 3.9694 -2.3126 19 6 3.0005 3.6239 -1.7500 20 6 3.8543 2.8253 -2.7672 21 1 4.9302 2.9581 -2.6534 22 6 3.3680 1.3614 -2.6441 23 16 3.1802 3.4195 -4.3774 24 1 -0.3634 -1.0236 0.0908 25 1 -0.3633 0.5905 0.8410 26 1 -0.3633 0.4332 -0.9319 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 4.0401 -0.3565 2.6321 30 1 0.5745 2.3311 -1.1405 31 1 1.5391 0.3205 -2.2508 32 1 1.3249 1.3880 -4.4944 33 1 0.0076 1.8401 -3.3853 34 1 1.4875 5.0525 -2.3260 35 1 0.8384 3.5345 -1.6773 36 1 2.8764 3.0289 -0.8452 37 1 3.5196 4.5487 -1.4985 38 1 3.8691 0.8810 -1.8038 39 1 3.5996 0.8226 -3.5630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403616983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 102.858671 kcal Electronic energy + Delta-G solvation = -19210.592408 eV Core-core repulsion = 16669.328027 eV Total energy + Delta-G solvation = -2541.264381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.86729 -36.62259 -34.11811 -32.90562 -32.06686 -31.38379 -28.42472 -25.12322 -24.91297 -24.15495 -21.96371 -21.19345 -19.83151 -18.68912 -17.94998 -16.82457 -16.52076 -15.98561 -15.09970 -14.85505 -14.64631 -14.26446 -14.06474 -13.99696 -13.80928 -13.43077 -13.08728 -12.93941 -12.78155 -12.63825 -12.40313 -12.26159 -11.85572 -11.69011 -11.50875 -11.37409 -11.12611 -10.94857 -10.59498 -10.33663 -10.18461 -10.00040 -8.48832 -8.01677 -7.99135 -6.02902 1.23857 1.42852 1.48365 1.53153 1.57309 2.47615 3.26548 3.59542 3.87445 4.06874 4.08825 4.23435 4.34694 4.55426 4.57956 4.60324 4.63893 4.66487 4.82978 4.89625 5.11481 5.14912 5.17285 5.23068 5.29244 5.34500 5.40025 5.48156 5.56321 5.69309 5.76811 5.85542 5.94062 6.06383 6.29164 6.49538 6.56843 7.04147 7.06661 7.60932 9.02630 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.010526 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.078023 B = 2659.412678 C = 3443.339504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.152 4.152 3 C 0.197 3.803 4 H 0.013 0.987 5 C -0.514 4.514 6 H 0.098 0.902 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.930 3.070 10 H -0.283 1.283 11 H -0.294 1.294 12 H -0.268 1.268 13 N -0.637 5.637 14 C 0.088 3.912 15 C -0.107 4.107 16 C -0.010 4.010 17 H 0.131 0.869 18 C -0.096 4.096 19 C -0.139 4.139 20 C -0.004 4.004 21 H 0.092 0.908 22 C -0.125 4.125 23 S -0.399 6.399 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.254 0.746 30 H 0.324 0.676 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.124 0.876 36 H 0.178 0.822 37 H -0.001 1.001 38 H 0.105 0.895 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 2.942 -7.657 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.191 4.191 3 C 0.089 3.911 4 H 0.031 0.969 5 C -0.552 4.552 6 H 0.115 0.885 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.758 3.242 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.192 1.192 13 N -0.272 5.272 14 C -0.021 4.021 15 C -0.146 4.146 16 C -0.138 4.138 17 H 0.149 0.851 18 C -0.135 4.135 19 C -0.178 4.178 20 C -0.132 4.132 21 H 0.110 0.890 22 C -0.164 4.164 23 S -0.172 6.172 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.147 0.853 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.141 0.859 36 H 0.194 0.806 37 H 0.018 0.982 38 H 0.123 0.877 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.443 3.519 -8.667 10.822 hybrid contribution 0.446 -1.175 1.358 1.851 sum -4.998 2.344 -7.308 9.158 Atomic orbital electron populations 1.21756 0.96833 1.00482 1.00717 1.22105 0.93786 1.01659 1.01566 1.19260 0.94046 0.89145 0.88663 0.96892 1.22134 0.92482 1.30038 1.10560 0.88460 1.25523 1.00680 0.95996 0.95886 1.69966 1.35666 1.34675 1.14944 0.85980 0.83156 0.76763 0.78332 1.20963 1.22070 1.19237 1.64326 1.18279 1.42162 1.02456 1.21189 0.94629 0.96035 0.90267 1.22205 1.00435 0.93750 0.98259 1.24671 0.91051 0.99458 0.98608 0.85124 1.22937 1.00095 0.97577 0.92847 1.24053 0.92011 0.97386 1.04317 1.24375 1.00228 0.98713 0.89833 0.89008 1.22607 0.96983 0.94478 1.02366 1.87775 1.13466 1.89755 1.26192 0.93873 0.93771 0.92576 0.94807 0.91190 0.93609 0.85321 0.93754 0.91071 0.89046 0.94926 0.85932 0.80553 0.98209 0.87684 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.37 71.98 0.67 -3.91 16 2 C -0.15 -6.23 4.63 30.59 0.14 -6.09 16 3 C 0.20 8.16 2.19 44.17 0.10 8.26 16 4 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 5 C -0.51 -23.96 5.09 25.60 0.13 -23.83 16 6 H 0.10 4.43 3.19 -2.91 -0.01 4.42 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -48.38 10.98 21.45 0.24 -48.14 16 9 Si 0.93 41.29 29.54 68.60 2.03 43.32 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.64 -20.76 0.93 -475.17 -0.44 -21.20 16 14 C 0.09 2.79 2.08 44.56 0.09 2.89 16 15 C -0.11 -2.76 5.16 31.01 0.16 -2.60 16 16 C -0.01 -0.27 4.83 31.86 0.15 -0.12 16 17 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 18 C -0.10 -2.80 5.24 31.58 0.17 -2.63 16 19 C -0.14 -5.03 4.70 31.58 0.15 -4.88 16 20 C 0.00 -0.13 3.97 31.86 0.13 -0.01 16 21 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 22 C -0.13 -4.57 4.73 31.01 0.15 -4.43 16 23 S -0.40 -13.52 21.99 -56.49 -1.24 -14.76 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.55 6.84 -2.39 -0.02 1.53 16 27 H 0.03 1.41 6.04 -2.38 -0.01 1.39 16 28 H 0.07 3.44 5.69 -2.39 -0.01 3.43 16 29 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 30 H 0.32 9.06 5.63 -89.70 -0.50 8.55 16 31 H 0.04 1.50 5.18 -2.39 -0.01 1.49 16 32 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 33 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 3.30 4.19 -63.88 -0.27 3.04 16 36 H 0.18 7.05 2.02 -70.38 -0.14 6.91 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.11 4.46 4.51 -2.39 -0.01 4.45 16 39 H 0.05 1.72 8.03 -2.38 -0.02 1.70 16 Total: -1.00 -51.73 274.85 3.23 -48.50 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.16 Total: 28.28 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 2.48 Total: -35.99 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.21 Total: -69.34 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: -13.52 SS G_CDS: -1.24 Total: -14.76 kcal Total: -51.73 3.23 -48.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403616983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.358 kcal (2) G-P(sol) polarization free energy of solvation -51.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds