Wall clock time and date at job start Mon Mar 30 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 C 1.50700 * 109.46978 * 119.99491 * 2 1 3 5 5 H 1.07998 * 119.99913 * 120.00079 * 4 2 1 6 6 C 1.37880 * 120.00109 * 300.00484 * 4 2 1 7 7 N 1.31518 * 120.00108 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47047 * 59.99926 * 8 6 4 10 10 H 1.48497 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47172 * 299.99755 * 8 6 4 12 12 N 1.46895 * 109.47357 * 239.99519 * 2 1 3 13 13 C 1.46906 * 110.99874 * 187.48889 * 12 2 1 14 14 C 1.46901 * 111.00132 * 63.53543 * 12 2 1 15 15 C 1.53342 * 108.46620 * 163.82409 * 14 12 2 16 16 C 1.54742 * 108.82063 * 58.22303 * 15 14 12 17 17 H 1.09006 * 114.19204 * 195.91124 * 16 15 14 18 18 C 1.54967 * 105.19913 * 322.11394 * 16 15 14 19 19 C 1.52464 * 111.62361 * 81.73137 * 18 16 15 20 20 C 1.54743 * 111.84389 * 359.90002 * 19 18 16 21 21 H 1.09000 * 114.83943 * 152.54220 * 20 19 18 22 22 C 1.52456 * 108.78974 * 287.58838 * 14 12 2 23 23 S 1.84392 * 105.58216 * 69.39686 * 16 15 14 24 24 H 1.08997 * 109.47734 * 268.82662 * 1 2 3 25 25 H 1.09009 * 109.47052 * 28.82950 * 1 2 3 26 26 H 1.09001 * 109.46748 * 148.82358 * 1 2 3 27 27 H 0.96994 * 120.00502 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46977 * 297.00276 * 13 12 2 29 29 H 1.09001 * 109.47201 * 57.00630 * 13 12 2 30 30 H 1.08999 * 109.46960 * 177.00415 * 13 12 2 31 31 H 1.09007 * 108.75743 * 45.94302 * 14 12 2 32 32 H 1.08991 * 110.38356 * 298.02518 * 15 14 12 33 33 H 1.09007 * 109.07779 * 177.63017 * 15 14 12 34 34 H 1.09007 * 109.04531 * 202.26214 * 18 16 15 35 35 H 1.08999 * 109.04255 * 321.19379 * 18 16 15 36 36 H 1.08996 * 109.03981 * 120.54283 * 19 18 16 37 37 H 1.08998 * 109.03408 * 239.35065 * 19 18 16 38 38 H 1.09007 * 109.50546 * 182.58752 * 22 14 12 39 39 H 1.09004 * 109.53727 * 62.49182 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8304 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8061 -1.1206 4.0084 10 1 1.8266 -0.4195 5.2205 11 1 1.8256 -2.5199 4.0080 12 7 2.0197 -0.6926 -1.1993 13 6 3.4772 -0.8689 -1.1472 14 6 1.6190 0.0205 -2.4195 15 6 2.4736 -0.4926 -3.5848 16 6 2.2681 -2.0204 -3.7197 17 1 3.0227 -2.5208 -4.3266 18 6 2.1653 -2.5465 -2.2656 19 6 0.7630 -2.3579 -1.6977 20 6 -0.1871 -1.6895 -2.7200 21 1 -1.2412 -1.9378 -2.5956 22 6 0.1224 -0.1759 -2.6341 23 16 0.5394 -2.2362 -4.3242 24 1 -0.3634 -0.0210 1.0274 25 1 -0.3634 0.9004 -0.4956 26 1 -0.3633 -0.8793 -0.5320 27 1 0.7092 1.1620 3.4843 28 1 3.9613 0.1078 -1.1394 29 1 3.7451 -1.4144 -0.2423 30 1 3.8067 -1.4307 -2.0211 31 1 1.8180 1.0839 -2.2855 32 1 3.5275 -0.2817 -3.4042 33 1 2.1555 -0.0002 -4.5038 34 1 2.4144 -3.6076 -2.2529 35 1 2.8774 -2.0070 -1.6411 36 1 0.3581 -3.3310 -1.4200 37 1 0.8214 -1.7322 -0.8071 38 1 -0.1792 0.3104 -3.5618 39 1 -0.4259 0.2609 -1.7993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403788428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:42 Heat of formation + Delta-G solvation = 181.493606 kcal Electronic energy + Delta-G solvation = -19282.616005 eV Core-core repulsion = 16744.761490 eV Total energy + Delta-G solvation = -2537.854515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36585 -34.69884 -33.35595 -32.11427 -31.11217 -28.76324 -25.69530 -25.07393 -23.66841 -23.35619 -20.18766 -19.44845 -18.87192 -16.95037 -16.23038 -15.87757 -14.96777 -14.46790 -13.98338 -13.90006 -13.28144 -12.89279 -12.76994 -12.51528 -12.15499 -11.71656 -11.58058 -11.33016 -11.07145 -10.99532 -10.85388 -10.60783 -10.44376 -10.29089 -10.06893 -9.92306 -9.79875 -9.58251 -9.13298 -8.77395 -8.38634 -8.24537 -7.18169 -6.61177 -6.11336 -4.18457 2.47809 2.81584 3.25818 3.31348 3.33574 4.31247 4.67659 5.08649 5.14480 5.21035 5.24049 5.38366 5.52910 5.69761 5.75303 5.81529 5.85948 5.93140 6.20373 6.23569 6.34801 6.42502 6.50276 6.53878 6.56345 6.65052 6.73074 6.84185 6.96489 6.98929 7.25943 7.35943 7.52981 7.70954 7.85779 7.97777 8.16259 8.37965 8.87839 9.47664 10.94640 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.007721 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.934858 B = 3625.804871 C = 3765.115365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.191 3.809 3 H 0.003 0.997 4 C -0.513 4.513 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.505 5.505 13 C -0.006 4.006 14 C 0.076 3.924 15 C -0.115 4.115 16 C -0.020 4.020 17 H 0.105 0.895 18 C -0.186 4.186 19 C -0.130 4.130 20 C -0.010 4.010 21 H 0.106 0.894 22 C -0.137 4.137 23 S -0.367 6.367 24 H 0.080 0.920 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.262 0.738 28 H 0.018 0.982 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.185 0.815 36 H 0.018 0.982 37 H 0.177 0.823 38 H 0.059 0.941 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -2.217 -8.370 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.085 3.915 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.230 5.230 13 C -0.151 4.151 14 C -0.032 4.032 15 C -0.154 4.154 16 C -0.148 4.148 17 H 0.123 0.877 18 C -0.222 4.222 19 C -0.168 4.168 20 C -0.138 4.138 21 H 0.124 0.876 22 C -0.176 4.176 23 S -0.140 6.140 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.200 0.800 36 H 0.036 0.964 37 H 0.193 0.807 38 H 0.078 0.922 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.089 -2.924 -9.332 9.840 hybrid contribution 0.925 0.631 1.578 1.935 sum 2.015 -2.293 -7.754 8.333 Atomic orbital electron populations 1.22528 0.97851 0.97434 1.02988 1.19494 0.92511 0.92801 0.86654 0.97945 1.21126 1.31710 1.12624 0.89656 0.91690 1.24929 0.95058 0.94990 0.99050 1.69943 1.36224 1.22621 1.23733 0.86622 0.79120 0.79857 0.82206 1.20342 1.21396 1.20103 1.65534 1.09196 1.45365 1.02938 1.22522 0.90204 0.99772 1.02576 1.21581 0.94802 0.95971 0.90866 1.22387 0.99880 0.94386 0.98764 1.24456 0.92794 0.98164 0.99421 0.87680 1.24644 1.03955 0.99724 0.93901 1.23489 0.90761 0.99366 1.03153 1.24502 1.00820 0.97893 0.90548 0.87569 1.22834 0.96246 0.94924 1.03592 1.87656 1.09715 1.90083 1.26523 0.90126 0.95942 0.92585 0.92832 0.96345 0.89201 0.90247 0.94264 0.90964 0.91376 0.95548 0.80002 0.96365 0.80682 0.92205 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 7.01 37.16 0.26 -3.00 16 2 C 0.19 4.25 1.64 -68.87 -0.11 4.14 16 3 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 4 C -0.51 -12.56 7.61 -34.44 -0.26 -12.82 16 5 H 0.07 1.56 6.15 -52.49 -0.32 1.24 16 6 C 0.06 1.59 5.07 -17.82 -0.09 1.50 16 7 N -0.89 -23.75 11.57 55.43 0.64 -23.11 16 8 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.50 -9.23 0.38 -311.09 -0.12 -9.35 16 13 C -0.01 -0.10 6.21 60.07 0.37 0.28 16 14 C 0.08 1.29 2.23 -67.81 -0.15 1.13 16 15 C -0.11 -1.69 4.83 -25.64 -0.12 -1.81 16 16 C -0.02 -0.31 4.51 -24.78 -0.11 -0.42 16 17 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.19 -3.11 4.77 -25.97 -0.12 -3.24 16 19 C -0.13 -2.37 4.65 -26.09 -0.12 -2.49 16 20 C -0.01 -0.16 4.22 -24.90 -0.11 -0.27 16 21 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 22 C -0.14 -2.28 4.75 -26.09 -0.12 -2.41 16 23 S -0.37 -6.28 22.00 -107.50 -2.37 -8.64 16 24 H 0.08 1.98 5.95 -51.93 -0.31 1.67 16 25 H 0.02 0.46 6.49 -51.92 -0.34 0.12 16 26 H 0.06 1.11 3.75 -51.93 -0.19 0.92 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 1.60 5.93 -51.93 -0.31 1.29 16 30 H 0.08 1.14 4.24 -51.93 -0.22 0.92 16 31 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.07 0.96 6.48 -51.93 -0.34 0.62 16 33 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.18 3.03 1.16 -172.03 -0.20 2.83 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.18 3.52 1.99 -86.02 -0.17 3.35 16 38 H 0.06 0.95 8.03 -51.93 -0.42 0.53 16 39 H 0.11 1.95 3.45 -51.93 -0.18 1.77 16 LS Contribution 268.94 15.07 4.05 4.05 Total: -1.00 -25.73 268.94 -8.99 -34.73 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.49 Total: 6.67 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.69 Total: -19.40 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.52 Total: -32.46 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.37 Total: -8.64 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.73 -8.99 -34.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403788428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.219 kcal (2) G-P(sol) polarization free energy of solvation -25.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds