Wall clock time and date at job start Mon Mar 30 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47094 * 2 1 4 4 C 1.50700 * 109.46978 * 119.99491 * 2 1 3 5 5 H 1.07998 * 119.99913 * 120.00079 * 4 2 1 6 6 C 1.37880 * 120.00109 * 300.00484 * 4 2 1 7 7 N 1.31518 * 120.00108 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00171 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47047 * 59.99926 * 8 6 4 10 10 H 1.48497 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47172 * 299.99755 * 8 6 4 12 12 N 1.46895 * 109.47357 * 239.99519 * 2 1 3 13 13 C 1.46906 * 110.99874 * 187.48889 * 12 2 1 14 14 C 1.46901 * 111.00132 * 63.53543 * 12 2 1 15 15 C 1.53342 * 108.46620 * 163.82409 * 14 12 2 16 16 C 1.54742 * 108.82063 * 58.22303 * 15 14 12 17 17 H 1.09006 * 114.19204 * 195.91124 * 16 15 14 18 18 C 1.54967 * 105.19913 * 322.11394 * 16 15 14 19 19 C 1.52464 * 111.62361 * 81.73137 * 18 16 15 20 20 C 1.54743 * 111.84389 * 359.90002 * 19 18 16 21 21 H 1.09000 * 114.83943 * 152.54220 * 20 19 18 22 22 C 1.52456 * 108.78974 * 287.58838 * 14 12 2 23 23 S 1.84392 * 105.58216 * 69.39686 * 16 15 14 24 24 H 1.08997 * 109.47734 * 268.82662 * 1 2 3 25 25 H 1.09009 * 109.47052 * 28.82950 * 1 2 3 26 26 H 1.09001 * 109.46748 * 148.82358 * 1 2 3 27 27 H 0.96994 * 120.00502 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46977 * 297.00276 * 13 12 2 29 29 H 1.09001 * 109.47201 * 57.00630 * 13 12 2 30 30 H 1.08999 * 109.46960 * 177.00415 * 13 12 2 31 31 H 1.09007 * 108.75743 * 45.94302 * 14 12 2 32 32 H 1.08991 * 110.38356 * 298.02518 * 15 14 12 33 33 H 1.09007 * 109.07779 * 177.63017 * 15 14 12 34 34 H 1.09007 * 109.04531 * 202.26214 * 18 16 15 35 35 H 1.08999 * 109.04255 * 321.19379 * 18 16 15 36 36 H 1.08996 * 109.03981 * 120.54283 * 19 18 16 37 37 H 1.08998 * 109.03408 * 239.35065 * 19 18 16 38 38 H 1.09007 * 109.50546 * 182.58752 * 22 14 12 39 39 H 1.09004 * 109.53727 * 62.49182 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8304 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8061 -1.1206 4.0084 10 1 1.8266 -0.4195 5.2205 11 1 1.8256 -2.5199 4.0080 12 7 2.0197 -0.6926 -1.1993 13 6 3.4772 -0.8689 -1.1472 14 6 1.6190 0.0205 -2.4195 15 6 2.4736 -0.4926 -3.5848 16 6 2.2681 -2.0204 -3.7197 17 1 3.0227 -2.5208 -4.3266 18 6 2.1653 -2.5465 -2.2656 19 6 0.7630 -2.3579 -1.6977 20 6 -0.1871 -1.6895 -2.7200 21 1 -1.2412 -1.9378 -2.5956 22 6 0.1224 -0.1759 -2.6341 23 16 0.5394 -2.2362 -4.3242 24 1 -0.3634 -0.0210 1.0274 25 1 -0.3634 0.9004 -0.4956 26 1 -0.3633 -0.8793 -0.5320 27 1 0.7092 1.1620 3.4843 28 1 3.9613 0.1078 -1.1394 29 1 3.7451 -1.4144 -0.2423 30 1 3.8067 -1.4307 -2.0211 31 1 1.8180 1.0839 -2.2855 32 1 3.5275 -0.2817 -3.4042 33 1 2.1555 -0.0002 -4.5038 34 1 2.4144 -3.6076 -2.2529 35 1 2.8774 -2.0070 -1.6411 36 1 0.3581 -3.3310 -1.4200 37 1 0.8214 -1.7322 -0.8071 38 1 -0.1792 0.3104 -3.5618 39 1 -0.4259 0.2609 -1.7993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403788428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:42 Heat of formation + Delta-G solvation = 170.052830 kcal Electronic energy + Delta-G solvation = -19283.112114 eV Core-core repulsion = 16744.761490 eV Total energy + Delta-G solvation = -2538.350624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.78944 -36.35959 -34.78286 -33.82421 -32.49033 -30.34986 -27.41359 -26.64573 -25.04459 -24.77251 -21.87512 -20.87532 -20.21810 -18.51669 -17.74871 -17.45645 -16.68128 -15.98589 -15.54738 -15.31255 -14.79982 -14.29237 -14.22029 -13.85553 -13.80237 -13.19849 -13.00346 -12.84397 -12.71900 -12.61670 -12.39004 -12.19235 -12.04933 -11.93373 -11.73119 -11.44462 -11.16535 -11.09190 -10.73968 -10.43463 -10.18881 -9.61183 -8.51945 -8.13068 -8.06589 -6.18139 1.18130 1.46633 1.48358 1.50373 1.54161 2.45554 3.18010 3.28430 3.76509 3.85592 3.94569 4.08522 4.24107 4.36659 4.40620 4.50201 4.57131 4.62998 4.76105 4.90235 4.99490 5.01638 5.06487 5.11365 5.15153 5.19255 5.21561 5.30570 5.36097 5.49741 5.57932 5.75427 5.83494 5.99115 6.24996 6.31880 6.42584 6.66298 6.97665 7.51183 8.98555 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.007721 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.934858 B = 3625.804871 C = 3765.115365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.200 3.800 3 H -0.036 1.036 4 C -0.515 4.515 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.293 1.293 11 H -0.272 1.272 12 N -0.498 5.498 13 C -0.008 4.008 14 C 0.073 3.927 15 C -0.108 4.108 16 C -0.011 4.011 17 H 0.131 0.869 18 C -0.188 4.188 19 C -0.132 4.132 20 C -0.009 4.009 21 H 0.112 0.888 22 C -0.133 4.133 23 S -0.382 6.382 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.259 0.741 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.187 0.813 36 H 0.006 0.994 37 H 0.159 0.841 38 H 0.070 0.930 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -3.133 -9.739 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.093 3.907 3 H -0.018 1.018 4 C -0.553 4.553 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.198 1.198 12 N -0.223 5.223 13 C -0.153 4.153 14 C -0.036 4.036 15 C -0.147 4.147 16 C -0.139 4.139 17 H 0.149 0.851 18 C -0.224 4.224 19 C -0.170 4.170 20 C -0.137 4.137 21 H 0.130 0.870 22 C -0.172 4.172 23 S -0.155 6.155 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.202 0.798 36 H 0.025 0.975 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.216 -3.853 -10.715 11.600 hybrid contribution 0.579 0.901 1.950 2.225 sum 2.795 -2.952 -8.765 9.662 Atomic orbital electron populations 1.22390 0.97528 0.98499 1.01109 1.19252 0.92732 0.90690 0.87989 1.01824 1.21469 1.30965 1.12417 0.90498 0.91286 1.25627 0.95490 0.95678 1.01723 1.70074 1.37653 1.24069 1.23892 0.85725 0.78763 0.78761 0.79049 1.19691 1.21856 1.19773 1.65575 1.10302 1.44410 1.02044 1.22604 0.89108 0.99971 1.03609 1.21683 0.95389 0.95461 0.91017 1.22357 1.00569 0.93861 0.97926 1.24588 0.92205 0.98607 0.98466 0.85127 1.24611 1.02896 0.99995 0.94927 1.23459 0.92132 0.98374 1.03045 1.24478 1.00992 0.97826 0.90417 0.87046 1.22745 0.96098 0.94730 1.03582 1.87744 1.11341 1.90150 1.26260 0.93402 0.95434 0.90925 0.93239 0.96573 0.90416 0.86844 0.95228 0.88861 0.90352 0.95428 0.79771 0.97534 0.82506 0.91123 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 7.01 71.98 0.50 -5.57 16 2 C 0.20 9.01 1.64 44.17 0.07 9.08 16 3 H -0.04 -1.86 8.01 -2.38 -0.02 -1.88 16 4 C -0.52 -25.37 7.61 25.60 0.19 -25.18 16 5 H 0.07 3.28 6.15 -2.91 -0.02 3.27 16 6 C 0.01 0.72 5.07 84.65 0.43 1.15 16 7 N -0.92 -50.34 11.57 21.45 0.25 -50.09 16 8 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 N -0.50 -17.71 0.38 ******* -0.43 -18.14 16 13 C -0.01 -0.26 6.21 127.69 0.79 0.53 16 14 C 0.07 2.33 2.23 44.85 0.10 2.43 16 15 C -0.11 -2.80 4.83 31.30 0.15 -2.65 16 16 C -0.01 -0.29 4.51 31.86 0.14 -0.15 16 17 H 0.13 2.97 8.14 -2.38 -0.02 2.95 16 18 C -0.19 -5.80 4.77 31.09 0.15 -5.66 16 19 C -0.13 -4.64 4.65 31.01 0.14 -4.49 16 20 C -0.01 -0.30 4.22 31.78 0.13 -0.16 16 21 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 22 C -0.13 -4.23 4.75 31.01 0.15 -4.09 16 23 S -0.38 -12.05 22.00 -56.49 -1.24 -13.30 16 24 H 0.05 2.42 5.95 -2.39 -0.01 2.40 16 25 H 0.03 1.15 6.49 -2.38 -0.02 1.13 16 26 H 0.07 2.90 3.75 -2.39 -0.01 2.89 16 27 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 2.66 5.93 -2.39 -0.01 2.65 16 30 H 0.11 2.85 4.24 -2.39 -0.01 2.84 16 31 H 0.03 1.02 7.91 -2.38 -0.02 1.00 16 32 H 0.09 2.07 6.48 -2.39 -0.02 2.06 16 33 H 0.08 1.95 8.05 -2.38 -0.02 1.93 16 34 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.19 5.66 1.16 -151.30 -0.18 5.48 16 36 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.16 6.21 1.99 -69.70 -0.14 6.07 16 38 H 0.07 2.10 8.03 -2.38 -0.02 2.08 16 39 H 0.10 3.44 3.45 -2.38 -0.01 3.43 16 Total: -1.00 -54.78 268.94 4.32 -50.46 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.76 Total: 22.42 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 2.96 Total: -34.75 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.18 Total: -68.23 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -12.05 SS G_CDS: -1.24 Total: -13.30 kcal Total: -54.78 4.32 -50.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403788428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.508 kcal (2) G-P(sol) polarization free energy of solvation -54.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds