Wall clock time and date at job start Mon Mar 30 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 102.99826 * 2 1 4 4 H 1.09000 * 112.91092 * 316.24843 * 3 2 1 5 5 C 1.53783 * 113.61462 * 87.50729 * 3 2 1 6 6 C 1.53778 * 87.08301 * 139.97839 * 5 3 2 7 7 C 1.53775 * 87.08066 * 334.56490 * 6 5 3 8 8 H 1.09004 * 113.61392 * 140.07043 * 7 6 5 9 9 N 1.46897 * 113.61745 * 270.88271 * 7 6 5 10 10 C 1.46897 * 111.00527 * 255.49931 * 9 7 6 11 11 H 1.09001 * 110.05286 * 326.41341 * 10 9 7 12 12 C 1.53869 * 110.03641 * 87.82759 * 10 9 7 13 13 C 1.54266 * 106.59800 * 119.28640 * 12 10 9 14 14 C 1.55238 * 104.23333 * 23.61579 * 13 12 10 15 15 H 1.08993 * 110.76342 * 80.31404 * 14 13 12 16 16 C 1.50702 * 110.89800 * 203.79412 * 14 13 12 17 17 H 1.08003 * 119.99932 * 113.21199 * 16 14 13 18 18 C 1.37871 * 119.99624 * 293.21103 * 16 14 13 19 19 N 1.31516 * 120.00376 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99561 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47031 * 60.00240 * 20 18 16 22 22 H 1.48502 * 109.46723 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47289 * 299.99816 * 20 18 16 24 24 C 1.54266 * 110.03377 * 204.99970 * 10 9 7 25 25 H 1.08997 * 109.47141 * 299.99725 * 1 2 3 26 26 H 1.09004 * 109.47013 * 59.99837 * 1 2 3 27 27 H 1.08999 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08997 * 113.61893 * 25.42354 * 5 3 2 29 29 H 1.09006 * 113.68758 * 254.53860 * 5 3 2 30 30 H 1.08998 * 113.61435 * 220.01752 * 6 5 3 31 31 H 1.08998 * 113.69239 * 89.12854 * 6 5 3 32 32 H 1.00907 * 110.99804 * 19.45281 * 9 7 6 33 33 H 1.08999 * 110.04012 * 238.57287 * 12 10 9 34 34 H 1.09003 * 110.03070 * 0.02562 * 12 10 9 35 35 H 1.09005 * 110.48526 * 142.29451 * 13 12 10 36 36 H 1.09007 * 110.48724 * 264.79935 * 13 12 10 37 37 H 0.96999 * 119.99732 * 179.97438 * 19 18 16 38 38 H 1.09002 * 110.48629 * 335.78109 * 24 10 9 39 39 H 1.08998 * 110.48744 * 98.29012 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3440 -0.6943 5 6 2.3009 2.3815 1.4077 6 6 3.5206 3.1737 0.9084 7 6 3.7283 2.0519 -0.1227 8 1 4.0271 2.4132 -1.1068 9 7 4.5759 0.9551 0.3636 10 6 5.9191 1.0261 -0.2269 11 1 5.8608 1.4178 -1.2424 12 6 6.8262 1.9237 0.6329 13 6 7.9932 1.0376 1.1153 14 6 8.0614 -0.1069 0.0688 15 1 8.5867 0.2205 -0.8283 16 6 8.7140 -1.3326 0.6544 17 1 8.1361 -2.2326 0.8044 18 6 10.0488 -1.3049 0.9985 19 7 10.7524 -0.2088 0.8163 20 14 10.8580 -2.8244 1.7238 21 1 10.7601 -3.9468 0.7563 22 1 12.2876 -2.5373 2.0051 23 1 10.1698 -3.1972 2.9857 24 6 6.5666 -0.3740 -0.2370 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.5394 1.6578 2.1871 29 1 1.4461 3.0091 1.6603 30 1 4.3237 3.2469 1.6416 31 1 3.2658 4.1351 0.4624 32 1 4.6236 0.9546 1.3715 33 1 7.2081 2.7510 0.0348 34 1 6.2698 2.3063 1.4886 35 1 8.9246 1.6039 1.1222 36 1 7.7838 0.6378 2.1076 37 1 11.6914 -0.1894 1.0588 38 1 6.1257 -1.0038 0.5357 39 1 6.4548 -0.8390 -1.2165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425371262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:38 Heat of formation + Delta-G solvation = -7.864321 kcal Electronic energy + Delta-G solvation = -17167.556575 eV Core-core repulsion = 14621.490884 eV Total energy + Delta-G solvation = -2546.065691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49467 -38.52025 -34.90664 -32.87137 -29.80602 -29.64762 -28.12975 -26.66217 -25.72090 -24.97536 -21.10791 -20.94854 -20.19402 -18.43072 -17.53802 -16.94373 -16.52167 -16.26302 -15.37745 -15.17394 -14.62622 -14.44232 -14.39541 -14.19523 -13.99806 -13.86014 -13.47631 -13.21435 -12.98113 -12.75902 -12.46677 -12.40478 -12.09108 -11.74882 -11.50225 -11.47528 -11.32903 -11.21377 -10.85050 -10.80675 -10.51656 -10.43513 -9.16920 -8.40948 -8.09809 -6.18794 0.99650 1.41936 1.43396 1.51010 1.93895 2.45233 3.15527 3.20992 3.55556 3.70361 3.87329 4.00323 4.13008 4.23982 4.30712 4.41436 4.43635 4.57818 4.69797 4.76104 4.83503 4.89385 4.95248 5.02934 5.07289 5.10548 5.14891 5.20718 5.27649 5.30198 5.45997 5.50727 5.66931 5.93800 6.02353 6.31144 6.43323 6.55957 6.91699 7.48314 8.99005 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.032857 B = 0.004659 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.963843 B = 6009.065159 C = 6554.397802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.269 6.269 3 C -0.070 4.070 4 H 0.117 0.883 5 C -0.119 4.119 6 C -0.159 4.159 7 C 0.087 3.913 8 H 0.088 0.912 9 N -0.656 5.656 10 C 0.102 3.898 11 H 0.075 0.925 12 C -0.137 4.137 13 C -0.093 4.093 14 C 0.039 3.961 15 H -0.001 1.001 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.092 4.092 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.344 0.656 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.540 7.763 -0.225 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.040 6.040 3 C -0.200 4.200 4 H 0.135 0.865 5 C -0.159 4.159 6 C -0.200 4.200 7 C -0.026 4.026 8 H 0.106 0.894 9 N -0.285 5.285 10 C -0.008 4.008 11 H 0.093 0.907 12 C -0.176 4.176 13 C -0.131 4.131 14 C 0.020 3.980 15 H 0.017 0.983 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.777 3.223 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.131 4.131 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.951 6.453 -0.692 20.032 hybrid contribution 0.487 0.879 0.764 1.262 sum -18.465 7.332 0.072 19.867 Atomic orbital electron populations 1.23435 0.94613 1.06541 1.05095 1.87808 1.06480 1.12119 1.97633 1.25091 0.99939 0.93406 1.01557 0.86526 1.23133 0.98980 0.98900 0.94861 1.23565 0.98738 0.98624 0.99066 1.22573 0.90871 0.90015 0.99129 0.89416 1.60286 1.11321 1.44191 1.12734 1.22097 0.86612 0.94887 0.97158 0.90700 1.22855 0.97495 0.97974 0.99295 1.22114 0.95852 0.96925 0.98248 1.19617 0.91409 0.93467 0.93498 0.98252 1.21486 0.95241 0.98692 1.41439 0.93246 1.25740 0.97971 0.98669 0.96186 1.70079 1.08259 1.28556 1.49150 0.85723 0.77323 0.80191 0.79104 1.19729 1.20918 1.19650 1.22254 0.95471 0.95885 0.99454 0.90075 0.90165 0.88193 0.90026 0.89621 0.91205 0.87894 0.83545 0.92313 0.91380 0.94916 0.95039 0.93171 0.93022 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 10.76 113.37 1.22 -0.89 16 2 S -0.27 -6.63 21.31 -56.49 -1.20 -7.84 16 3 C -0.07 -1.39 4.24 31.12 0.13 -1.25 16 4 H 0.12 1.89 8.14 -2.39 -0.02 1.88 16 5 C -0.12 -2.04 7.41 31.12 0.23 -1.81 16 6 C -0.16 -2.80 7.61 31.12 0.24 -2.57 16 7 C 0.09 1.95 4.09 45.44 0.19 2.13 16 8 H 0.09 1.98 7.51 -2.38 -0.02 1.96 16 9 N -0.66 -19.02 5.27 -463.10 -2.44 -21.46 16 10 C 0.10 3.50 3.23 45.64 0.15 3.65 16 11 H 0.07 2.46 7.48 -2.39 -0.02 2.45 16 12 C -0.14 -4.85 6.43 31.32 0.20 -4.65 16 13 C -0.09 -4.38 5.78 31.79 0.18 -4.19 16 14 C 0.04 2.01 2.74 -10.12 -0.03 1.98 16 15 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 16 C -0.53 -30.35 8.50 25.60 0.22 -30.13 16 17 H 0.05 2.80 7.77 -2.91 -0.02 2.78 16 18 C 0.01 0.73 5.37 84.65 0.45 1.19 16 19 N -0.92 -54.88 12.44 21.45 0.27 -54.62 16 20 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 C -0.09 -3.97 5.94 31.67 0.19 -3.79 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.63 7.97 -2.39 -0.02 1.61 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.35 7.23 -2.39 -0.02 1.34 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.34 10.07 7.49 -89.69 -0.67 9.39 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.10 6.68 -2.39 -0.02 2.08 16 35 H 0.03 1.69 7.66 -2.38 -0.02 1.67 16 36 H 0.03 1.52 8.05 -2.38 -0.02 1.51 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.05 2.31 7.94 -2.39 -0.02 2.29 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.67 319.34 2.36 -60.31 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.34 Total: 17.01 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.37 Total: -40.32 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.17 Total: -76.08 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -1.20 Total: -7.84 kcal Total: -62.67 2.36 -60.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425371262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.448 kcal (2) G-P(sol) polarization free energy of solvation -62.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds