Wall clock time and date at job start Mon Mar 30 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29829 * 118.35874 * 2 1 4 4 C 1.50306 * 122.88994 * 180.37217 * 3 2 1 5 5 H 1.08998 * 109.38974 * 103.57187 * 4 3 2 6 6 C 1.53001 * 109.42616 * 223.44649 * 4 3 2 7 7 C 1.53082 * 109.71815 * 343.52057 * 4 3 2 8 8 N 1.47249 * 108.47186 * 48.96579 * 7 4 3 9 9 C 1.46901 * 110.99776 * 54.58230 * 8 7 4 10 10 C 1.53000 * 109.46769 * 170.00318 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.47152 * 179.97438 * 11 10 9 13 13 C 1.76198 * 100.00092 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.38802 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00450 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99698 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46777 * 90.00197 * 17 15 13 19 19 H 1.48501 * 109.46807 * 210.00417 * 17 15 13 20 20 H 1.48504 * 109.46961 * 330.00465 * 17 15 13 21 21 C 1.46836 * 110.20409 * 291.19592 * 8 7 4 22 22 H 1.09003 * 109.46919 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46913 * 119.99963 * 1 2 3 24 24 H 1.08996 * 109.47293 * 240.00491 * 1 2 3 25 25 H 1.08001 * 118.54927 * 0.38960 * 3 2 1 26 26 H 1.09003 * 109.46991 * 180.25352 * 6 4 3 27 27 H 1.08995 * 109.47523 * 300.24973 * 6 4 3 28 28 H 1.09003 * 109.47088 * 60.25549 * 6 4 3 29 29 H 1.09002 * 109.64298 * 289.27184 * 7 4 3 30 30 H 1.09007 * 109.63888 * 168.65898 * 7 4 3 31 31 H 1.09002 * 109.47401 * 50.00025 * 9 8 7 32 32 H 1.09001 * 109.46874 * 290.00038 * 9 8 7 33 33 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 34 34 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 36 36 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 37 37 H 0.96996 * 120.00276 * 179.97438 * 16 15 13 38 38 H 1.08995 * 109.33837 * 171.17418 * 21 8 7 39 39 H 1.09008 * 109.33703 * 290.67894 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1425 0.0000 4 6 3.6221 1.2612 -0.0082 5 1 3.9580 1.5334 -1.0087 6 6 4.0523 2.3427 0.9850 7 6 4.2484 -0.0767 0.3929 8 7 3.6207 -1.1435 -0.4047 9 6 3.7217 -0.8552 -1.8416 10 6 3.2891 -2.0864 -2.6404 11 6 3.3950 -1.7864 -4.1369 12 16 2.8840 -3.2431 -5.0819 13 6 3.0974 -2.6345 -6.7216 14 1 3.4506 -1.6265 -6.8818 15 6 2.8107 -3.4502 -7.8075 16 7 2.9707 -2.9957 -9.0324 17 14 2.1992 -5.1934 -7.5304 18 1 0.7161 -5.1917 -7.4564 19 1 2.6378 -6.0566 -8.6564 20 1 2.7578 -5.7176 -6.2582 21 6 2.2201 -1.3212 -0.0009 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5138 -0.8899 24 1 -0.3634 -0.5137 0.8900 25 1 1.5341 2.0473 0.0065 26 1 5.1385 2.4325 0.9763 27 1 3.6067 3.2957 0.7000 28 1 3.7182 2.0702 1.9861 29 1 4.0728 -0.2604 1.4529 30 1 5.3201 -0.0536 0.1947 31 1 4.7530 -0.6046 -2.0903 32 1 3.0736 -0.0148 -2.0900 33 1 3.9373 -2.9268 -2.3919 34 1 2.2580 -2.3370 -2.3917 35 1 2.7471 -0.9459 -4.3857 36 1 4.4264 -1.5361 -4.3853 37 1 2.7706 -3.5658 -9.7912 38 1 1.7264 -1.9976 -0.6986 39 1 2.1849 -1.7507 1.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430285133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:03 Heat of formation + Delta-G solvation = -5.602224 kcal Electronic energy + Delta-G solvation = -16786.612885 eV Core-core repulsion = 14240.645286 eV Total energy + Delta-G solvation = -2545.967599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.06801 -34.95844 -33.70091 -32.42142 -32.17407 -27.08784 -27.02774 -26.59405 -25.59092 -22.93128 -21.45196 -20.90750 -17.56896 -17.44847 -16.10219 -15.77533 -15.08707 -14.96179 -14.84336 -14.17131 -13.94906 -13.55536 -13.13121 -12.85326 -12.82038 -12.59943 -12.19395 -12.05466 -11.84259 -11.71462 -11.61976 -11.53268 -11.40131 -11.05083 -11.00670 -10.58582 -10.31537 -10.09622 -9.74407 -8.98512 -8.89655 -8.53111 -8.29654 -6.91257 -6.26326 -3.98159 2.06015 3.03303 3.31646 3.47611 3.58262 3.96064 4.33822 4.52761 4.69777 4.71932 4.83769 4.96801 5.12275 5.15529 5.19628 5.25670 5.31723 5.38329 5.46326 5.53686 5.60686 5.64022 5.69486 5.71739 5.80222 5.84063 5.87013 5.93278 6.00021 6.03761 6.27590 6.45240 6.53121 6.68215 6.77876 7.01522 7.08782 7.97517 8.46450 9.19760 10.83267 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.004155 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.807365 B = 6737.566560 C = 6943.541041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.152 4.152 3 C -0.158 4.158 4 C -0.099 4.099 5 H 0.081 0.919 6 C -0.137 4.137 7 C 0.057 3.943 8 N -0.527 5.527 9 C 0.054 3.946 10 C -0.096 4.096 11 C -0.081 4.081 12 S -0.215 6.215 13 C -0.502 4.502 14 H 0.087 0.913 15 C 0.092 3.908 16 N -0.883 5.883 17 Si 0.861 3.139 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.237 1.237 21 C 0.081 3.919 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.091 0.909 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 7.388 20.992 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.154 4.154 3 C -0.176 4.176 4 C -0.119 4.119 5 H 0.099 0.901 6 C -0.195 4.195 7 C -0.071 4.071 8 N -0.247 5.247 9 C -0.075 4.075 10 C -0.135 4.135 11 C -0.230 4.230 12 S 0.012 5.988 13 C -0.649 4.649 14 H 0.105 0.895 15 C -0.116 4.116 16 N -0.520 5.520 17 Si 0.686 3.314 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.161 1.161 21 C -0.047 4.047 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.908 5.858 21.222 22.035 hybrid contribution -0.414 1.411 -0.884 1.715 sum -1.322 7.269 20.338 21.639 Atomic orbital electron populations 1.20898 0.92211 1.02188 1.02269 1.21787 0.96556 0.96461 1.00590 1.22044 0.95458 0.97154 1.02923 1.20692 0.93415 0.97344 1.00416 0.90119 1.21703 1.01061 0.97925 0.98830 1.22350 0.98842 0.87868 0.98065 1.62747 1.14580 1.42708 1.04661 1.22214 1.01305 0.97514 0.86447 1.21338 1.02036 0.97665 0.92482 1.23006 1.03244 1.00613 0.96118 1.84137 1.88332 1.21074 1.05226 1.22138 1.51535 1.03443 0.87825 0.89477 1.24794 0.94017 0.98692 0.94135 1.69937 1.47047 1.37185 0.97827 0.86672 0.80266 0.84344 0.80079 1.19410 1.20121 1.16109 1.21127 0.87586 0.93957 1.02037 0.92376 0.91305 0.91731 0.87900 0.92425 0.92731 0.92670 0.90669 0.90335 0.90874 0.94060 0.90754 0.91662 0.91732 0.91439 0.92006 0.89117 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.15 -1.65 5.35 -101.01 -0.54 -2.19 16 3 C -0.16 -1.67 8.13 -35.89 -0.29 -1.96 16 4 C -0.10 -0.97 2.38 -91.92 -0.22 -1.19 16 5 H 0.08 0.87 7.15 -51.93 -0.37 0.50 16 6 C -0.14 -1.09 9.15 37.16 0.34 -0.75 16 7 C 0.06 0.58 5.32 -3.59 -0.02 0.56 16 8 N -0.53 -6.39 5.02 -236.11 -1.19 -7.58 16 9 C 0.05 0.74 4.03 -3.82 -0.02 0.72 16 10 C -0.10 -1.54 5.19 -26.73 -0.14 -1.68 16 11 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 12 S -0.22 -5.34 19.41 -107.50 -2.09 -7.43 16 13 C -0.50 -14.78 10.04 30.94 0.31 -14.47 16 14 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 15 C 0.09 2.71 5.50 -17.43 -0.10 2.62 16 16 N -0.88 -27.07 13.97 55.49 0.78 -26.30 16 17 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 21 C 0.08 0.91 5.55 -5.28 -0.03 0.89 16 22 H 0.06 0.51 7.61 -51.93 -0.40 0.11 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 1.03 7.63 -52.49 -0.40 0.63 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 30 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.04 0.58 6.04 -51.93 -0.31 0.27 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.04 6.36 -51.93 -0.33 0.71 16 35 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 37 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 1.09 6.06 -51.93 -0.31 0.78 16 39 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -30.69 318.16 -9.31 -40.00 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.77 Total: -0.94 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.13 Total: -19.61 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: -0.41 Total: -33.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.09 Total: -7.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.69 -9.31 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430285133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.399 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds