Wall clock time and date at job start Mon Mar 30 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29823 * 118.35994 * 2 1 4 4 C 1.50308 * 122.89346 * 179.64795 * 3 2 1 5 5 H 1.08998 * 109.43196 * 256.40433 * 4 3 2 6 6 C 1.53001 * 109.42795 * 136.50220 * 4 3 2 7 7 C 1.53088 * 109.72136 * 16.46660 * 4 3 2 8 8 N 1.47245 * 108.46846 * 311.04777 * 7 4 3 9 9 C 1.46906 * 110.99961 * 192.19330 * 8 7 4 10 10 C 1.52999 * 109.46897 * 303.11913 * 9 8 7 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 8 12 12 S 1.81003 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.76196 * 99.99846 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00031 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00514 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99570 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47213 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46950 * 120.00258 * 17 15 13 20 20 H 1.48495 * 109.47292 * 239.99816 * 17 15 13 21 21 C 1.46843 * 110.20540 * 68.80836 * 8 7 4 22 22 H 1.09005 * 109.46496 * 270.01693 * 1 2 3 23 23 H 1.09002 * 109.46864 * 30.01544 * 1 2 3 24 24 H 1.08998 * 109.47046 * 150.01860 * 1 2 3 25 25 H 1.07996 * 118.55171 * 359.63546 * 3 2 1 26 26 H 1.09001 * 109.46818 * 60.00598 * 6 4 3 27 27 H 1.08998 * 109.47081 * 179.97438 * 6 4 3 28 28 H 1.08997 * 109.47263 * 300.00680 * 6 4 3 29 29 H 1.08998 * 109.63486 * 191.35952 * 7 4 3 30 30 H 1.08996 * 109.63794 * 70.74050 * 7 4 3 31 31 H 1.09000 * 109.47033 * 183.11660 * 9 8 7 32 32 H 1.09001 * 109.46544 * 63.11716 * 9 8 7 33 33 H 1.09000 * 109.47486 * 60.00024 * 10 9 8 34 34 H 1.09001 * 109.47362 * 299.99301 * 10 9 8 35 35 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 36 36 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 37 37 H 0.96995 * 120.00407 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.33659 * 69.31682 * 21 8 7 39 39 H 1.08998 * 109.33972 * 188.99184 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2612 0.0078 5 1 3.9590 1.5337 1.0079 6 6 4.0520 2.3420 -0.9863 7 6 4.2484 -0.0768 -0.3934 8 7 3.6207 -1.1435 0.4042 9 6 4.3680 -2.4022 0.2807 10 6 4.4618 -2.7970 -1.1944 11 6 5.2407 -4.1077 -1.3230 12 16 5.3511 -4.5753 -3.0681 13 6 6.2686 -6.0728 -2.9262 14 1 6.5774 -6.4268 -1.9537 15 6 6.5944 -6.7975 -4.0643 16 7 6.2177 -6.3663 -5.2495 17 14 7.5678 -8.3848 -3.9138 18 1 7.8668 -8.6484 -2.4834 19 1 6.7706 -9.5086 -4.4678 20 1 8.8391 -8.2595 -4.6708 21 6 2.2201 -1.3213 0.0004 22 1 -0.3632 0.0003 1.0278 23 1 -0.3633 0.8899 -0.5141 24 1 -0.3633 -0.8901 -0.5135 25 1 1.5341 2.0472 -0.0060 26 1 3.6100 3.2961 -0.6992 27 1 5.1385 2.4290 -0.9809 28 1 3.7137 2.0711 -1.9864 29 1 5.3200 -0.0536 -0.1953 30 1 4.0727 -0.2603 -1.4534 31 1 3.8525 -3.1867 0.8348 32 1 5.3712 -2.2703 0.6861 33 1 4.9774 -2.0126 -1.7485 34 1 3.4586 -2.9290 -1.5998 35 1 6.2438 -3.9754 -0.9177 36 1 4.7256 -4.8923 -0.7688 37 1 6.4451 -6.8729 -6.0447 38 1 2.1849 -1.7507 -1.0009 39 1 1.7256 -1.9954 0.6998 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430285134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:04 Heat of formation + Delta-G solvation = -25.433401 kcal Electronic energy + Delta-G solvation = -16604.112000 eV Core-core repulsion = 14057.284457 eV Total energy + Delta-G solvation = -2546.827543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57216 -36.68657 -34.63055 -34.35481 -33.12019 -28.19583 -27.77901 -27.74010 -27.14352 -24.34331 -22.39908 -21.75051 -19.63431 -18.38861 -17.06237 -16.91885 -16.76366 -16.19721 -15.88186 -15.44853 -15.20101 -14.72366 -14.34496 -14.14872 -13.71848 -13.50651 -13.44914 -13.30818 -13.20257 -12.95577 -12.81650 -12.58338 -12.50882 -12.39191 -12.27572 -11.69972 -11.58424 -11.56419 -11.23095 -11.17355 -10.38296 -9.65171 -9.25420 -8.70369 -8.39540 -6.16665 1.30407 1.34227 1.37232 1.48499 1.73278 2.26353 2.91719 2.94857 3.29015 3.72360 3.84060 3.96118 4.08191 4.11246 4.28844 4.36918 4.40012 4.45028 4.51622 4.57320 4.66382 4.75196 4.77343 4.81676 4.88537 4.89903 4.91403 5.07233 5.12681 5.21046 5.23963 5.26627 5.37872 5.39786 5.59469 5.96794 6.06852 6.16256 6.21274 7.02724 8.70209 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037179 B = 0.003746 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.936659 B = 7473.560791 C = 7633.004519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.142 4.142 3 C -0.153 4.153 4 C -0.055 4.055 5 H 0.086 0.914 6 C -0.139 4.139 7 C 0.049 3.951 8 N -0.529 5.529 9 C 0.066 3.934 10 C -0.120 4.120 11 C -0.083 4.083 12 S -0.206 6.206 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.015 3.985 16 N -0.908 5.908 17 Si 0.996 3.004 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.271 1.271 21 C 0.080 3.920 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.271 0.729 38 H 0.038 0.962 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.658 14.558 12.142 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.142 4.142 3 C -0.171 4.171 4 C -0.073 4.073 5 H 0.104 0.896 6 C -0.197 4.197 7 C -0.079 4.079 8 N -0.251 5.251 9 C -0.064 4.064 10 C -0.160 4.160 11 C -0.233 4.233 12 S 0.023 5.977 13 C -0.685 4.685 14 H 0.091 0.909 15 C -0.190 4.190 16 N -0.545 5.545 17 Si 0.817 3.183 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.048 4.048 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.062 15.193 11.539 20.711 hybrid contribution 0.992 -1.930 -0.194 2.178 sum -7.070 13.263 11.344 18.831 Atomic orbital electron populations 1.20850 0.90666 1.02836 1.02679 1.21186 0.96848 0.94226 1.01926 1.22221 0.95817 0.97442 1.01613 1.20084 0.92721 0.94154 1.00373 0.89556 1.21741 1.01670 0.98030 0.98220 1.22352 0.99129 0.91492 0.94910 1.62774 1.02071 1.06200 1.54072 1.22227 0.99659 0.91269 0.93250 1.21857 0.99584 0.95174 0.99435 1.23115 1.02204 1.00011 0.97943 1.84665 1.73557 1.31192 1.08312 1.23072 1.40355 1.08903 0.96194 0.90862 1.26088 0.96764 1.02151 0.93961 1.70162 1.45313 1.40333 0.98685 0.84949 0.77753 0.76693 0.78874 1.18573 1.19631 1.19613 1.21009 0.88487 0.95983 0.99296 0.90658 0.91024 0.91957 0.86291 0.90999 0.91898 0.93455 0.90208 0.95404 0.89858 0.89662 0.92112 0.92322 0.91708 0.91780 0.91950 0.94363 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.90 71.24 0.71 -1.14 16 2 C -0.14 -2.98 5.91 -15.45 -0.09 -3.07 16 3 C -0.15 -3.02 8.74 26.74 0.23 -2.79 16 4 C -0.05 -1.08 3.16 -11.63 -0.04 -1.12 16 5 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 6 C -0.14 -2.31 9.15 71.98 0.66 -1.65 16 7 C 0.05 1.17 3.97 86.27 0.34 1.51 16 8 N -0.53 -13.18 4.93 -900.89 -4.44 -17.62 16 9 C 0.07 1.72 5.34 86.30 0.46 2.18 16 10 C -0.12 -3.95 4.52 30.60 0.14 -3.82 16 11 C -0.08 -3.38 5.67 71.98 0.41 -2.97 16 12 S -0.21 -11.16 21.44 -56.49 -1.21 -12.37 16 13 C -0.54 -31.46 9.50 67.96 0.65 -30.82 16 14 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 15 C 0.02 0.87 5.49 84.86 0.47 1.34 16 16 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 17 Si 1.00 44.22 29.55 68.60 2.03 46.25 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 C 0.08 1.91 5.18 85.39 0.44 2.36 16 22 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.07 1.01 7.93 -2.39 -0.02 0.99 16 24 H 0.06 1.01 8.09 -2.39 -0.02 0.99 16 25 H 0.12 1.95 7.87 -2.91 -0.02 1.92 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 30 H 0.03 0.76 6.93 -2.39 -0.02 0.74 16 31 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 2.08 6.64 -2.39 -0.02 2.06 16 34 H 0.06 2.02 6.43 -2.39 -0.02 2.00 16 35 H 0.06 2.58 8.14 -2.40 -0.02 2.56 16 36 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.04 1.04 6.21 -2.39 -0.01 1.03 16 39 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.19 322.67 2.02 -64.17 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.99 Total: 14.69 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 4.37 Total: -39.99 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -4.16 Total: -72.74 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -1.21 Total: -12.37 kcal Total: -66.19 2.02 -64.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430285134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.732 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds