Wall clock time and date at job start Mon Mar 30 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 108.82647 * 2 1 4 4 C 1.54258 * 108.86959 * 118.53249 * 2 1 3 5 5 S 1.83616 * 102.73401 * 96.26068 * 4 2 1 6 6 C 1.83964 * 94.79289 * 34.47764 * 5 4 2 7 7 C 1.52331 * 108.86858 * 241.47572 * 2 1 3 8 8 H 1.09006 * 108.87239 * 359.97438 * 7 2 1 9 9 N 1.46897 * 108.87141 * 118.35780 * 7 2 1 10 10 C 1.46897 * 111.00158 * 204.99608 * 9 7 2 11 11 H 1.09001 * 110.43883 * 327.54485 * 10 9 7 12 12 C 1.54269 * 110.48575 * 90.22551 * 10 9 7 13 13 C 1.53878 * 106.59896 * 142.28919 * 12 10 9 14 14 C 1.54260 * 106.59775 * 0.02562 * 13 12 10 15 15 H 1.09003 * 110.49090 * 95.06746 * 14 13 12 16 16 C 1.50702 * 110.59900 * 217.65493 * 14 13 12 17 17 H 1.08001 * 119.99729 * 114.83957 * 16 14 13 18 18 C 1.37873 * 120.00217 * 294.84292 * 16 14 13 19 19 N 1.31508 * 120.00355 * 179.97438 * 18 16 14 20 20 Si 1.86796 * 119.99744 * 359.97438 * 18 16 14 21 21 H 1.48509 * 109.47192 * 90.00171 * 20 18 16 22 22 H 1.48500 * 109.47311 * 209.99789 * 20 18 16 23 23 H 1.48496 * 109.47314 * 329.99982 * 20 18 16 24 24 C 1.54891 * 104.19885 * 336.38798 * 14 13 12 25 25 H 1.09005 * 109.46741 * 180.69684 * 1 2 3 26 26 H 1.08996 * 109.47202 * 300.69920 * 1 2 3 27 27 H 1.08998 * 109.46951 * 60.70037 * 1 2 3 28 28 H 1.09000 * 110.78499 * 214.56738 * 4 2 1 29 29 H 1.09004 * 110.78573 * 338.01916 * 4 2 1 30 30 H 1.09001 * 110.78565 * 207.26012 * 6 5 4 31 31 H 1.08995 * 110.95106 * 83.87087 * 6 5 4 32 32 H 1.00899 * 110.99653 * 81.04290 * 9 7 2 33 33 H 1.09000 * 110.03564 * 261.57806 * 12 10 9 34 34 H 1.09003 * 110.03180 * 23.00284 * 12 10 9 35 35 H 1.08996 * 110.02924 * 240.71629 * 13 12 10 36 36 H 1.08996 * 110.02933 * 119.28778 * 13 12 10 37 37 H 0.96996 * 120.00334 * 180.02562 * 19 18 16 38 38 H 1.09004 * 110.75951 * 279.63149 * 24 14 13 39 39 H 1.09000 * 110.75996 * 156.25672 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0290 -0.6972 1.2824 5 16 2.3447 -2.4141 0.7130 6 6 2.9049 -1.9181 -0.9676 7 6 2.0227 -0.6883 -1.2665 8 1 1.1607 -1.0074 -1.8525 9 7 2.8011 0.2737 -2.0580 10 6 2.7972 -0.0903 -3.4812 11 1 2.7570 -1.1734 -3.5970 12 6 1.6102 0.5774 -4.2060 13 6 2.1199 0.9870 -5.5989 14 6 3.5985 0.5534 -5.6722 15 1 3.6861 -0.4254 -6.1439 16 6 4.4137 1.5743 -6.4234 17 1 5.1845 2.1320 -5.9122 18 6 4.1756 1.7964 -7.7631 19 7 4.8867 2.6876 -8.4185 20 14 2.8429 0.8314 -8.6473 21 1 1.5548 1.5644 -8.5516 22 1 3.2146 0.6686 -10.0758 23 1 2.6995 -0.5057 -8.0176 24 6 4.0479 0.4838 -4.1916 25 1 -0.3633 -1.0277 0.0125 26 1 -0.3633 0.5246 0.8836 27 1 -0.3633 0.5029 -0.8962 28 1 2.9481 -0.2344 1.6417 29 1 1.2598 -0.6829 2.0547 30 1 2.7166 -2.7136 -1.6886 31 1 3.9600 -1.6449 -0.9619 32 1 3.7440 0.3514 -1.7073 33 1 0.7863 -0.1296 -4.3028 34 1 1.2835 1.4586 -3.6538 35 1 2.0405 2.0670 -5.7227 36 1 1.5433 0.4788 -6.3717 37 1 4.7189 2.8442 -9.3609 38 1 4.2846 1.4780 -3.8125 39 1 4.8992 -0.1871 -4.0774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:27 Heat of formation + Delta-G solvation = -16.159154 kcal Electronic energy + Delta-G solvation = -17363.315942 eV Core-core repulsion = 14816.890561 eV Total energy + Delta-G solvation = -2546.425382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83936 -36.87189 -33.49556 -32.05275 -29.50733 -28.37940 -27.52810 -26.60360 -23.69054 -23.02324 -20.20750 -19.50084 -19.02918 -16.93685 -16.71796 -15.68331 -15.43345 -15.05356 -14.53904 -14.13832 -13.82068 -13.66162 -13.18748 -12.84047 -12.60030 -12.38246 -12.12995 -11.97632 -11.68385 -11.51054 -11.12482 -11.05848 -10.89620 -10.60575 -10.37596 -10.13488 -10.09924 -9.93392 -9.68054 -9.37906 -8.96213 -8.54030 -8.32954 -7.88036 -6.05784 -4.04299 1.69321 2.11752 3.29926 3.38351 3.39948 4.10486 4.28812 4.43612 4.63407 4.81253 4.86117 4.91880 5.19382 5.28116 5.33010 5.34984 5.40384 5.44784 5.57251 5.61867 5.69668 5.88668 5.90769 6.02729 6.13023 6.30076 6.38759 6.47205 6.60607 6.68366 6.79724 6.94288 7.15653 7.30154 7.47511 7.57169 7.80833 8.54889 8.98231 9.57485 11.07657 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.043152 B = 0.004530 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.706242 B = 6179.806785 C = 6304.247908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.063 4.063 5 S -0.304 6.304 6 C -0.094 4.094 7 C 0.088 3.912 8 H 0.091 0.909 9 N -0.673 5.673 10 C 0.076 3.924 11 H 0.043 0.957 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.014 3.986 15 H 0.029 0.971 16 C -0.508 4.508 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.904 5.904 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.266 1.266 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.341 0.659 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -7.218 17.082 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.211 4.211 5 S -0.079 6.079 6 C -0.244 4.244 7 C -0.024 4.024 8 H 0.110 0.890 9 N -0.304 5.304 10 C -0.033 4.033 11 H 0.061 0.939 12 C -0.146 4.146 13 C -0.168 4.168 14 C -0.005 4.005 15 H 0.047 0.953 16 C -0.546 4.546 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.190 1.190 24 C -0.144 4.144 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.160 0.840 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.220 -7.765 17.377 20.732 hybrid contribution 0.038 -0.206 -1.192 1.210 sum -8.182 -7.971 16.185 19.810 Atomic orbital electron populations 1.21940 0.93855 1.02185 1.02124 1.21584 0.97165 1.01336 0.90915 0.88460 1.24270 1.04283 0.92261 1.00308 1.87892 1.87375 1.14806 1.17821 1.25094 1.02738 1.01825 0.94699 1.22312 0.96659 0.88331 0.95110 0.89038 1.60852 1.18707 1.47922 1.02891 1.22559 0.98012 0.96890 0.85869 0.93857 1.22142 0.96000 0.99701 0.96768 1.22598 0.98758 1.01465 0.93984 1.19889 0.91546 0.97024 0.92076 0.95278 1.21031 1.18734 1.20550 0.94283 0.90902 1.24990 0.95902 0.94762 0.97438 1.69902 1.40671 1.33968 1.09683 0.86906 0.82536 0.81378 0.78433 1.20309 1.22070 1.19049 1.22589 0.94231 1.00240 0.97309 0.92226 0.92596 0.91912 0.89384 0.87850 0.87963 0.89157 0.84003 0.93891 0.91398 0.91385 0.94312 0.92744 0.90953 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.57 37.16 0.32 -0.96 16 2 C -0.09 -0.85 2.99 -90.30 -0.27 -1.12 16 3 H 0.10 0.98 7.79 -51.93 -0.40 0.57 16 4 C -0.06 -0.56 6.94 37.82 0.26 -0.29 16 5 S -0.30 -3.38 23.26 -107.50 -2.50 -5.88 16 6 C -0.09 -1.00 6.61 37.82 0.25 -0.75 16 7 C 0.09 0.97 2.51 -67.39 -0.17 0.80 16 8 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 9 N -0.67 -8.58 5.80 -97.68 -0.57 -9.15 16 10 C 0.08 1.17 2.91 -66.06 -0.19 0.98 16 11 H 0.04 0.66 7.57 -51.93 -0.39 0.26 16 12 C -0.11 -1.83 6.51 -25.61 -0.17 -1.99 16 13 C -0.13 -2.72 4.89 -25.61 -0.13 -2.84 16 14 C 0.01 0.32 2.27 -90.11 -0.20 0.11 16 15 H 0.03 0.69 7.06 -51.93 -0.37 0.32 16 16 C -0.51 -14.06 8.95 -34.44 -0.31 -14.37 16 17 H 0.07 2.18 8.01 -52.49 -0.42 1.76 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 19 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 20 Si 0.88 21.71 24.89 -169.99 -4.23 17.48 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.27 -6.29 6.41 56.52 0.36 -5.93 16 24 C -0.11 -1.97 5.65 -24.75 -0.14 -2.11 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.43 8.13 -51.93 -0.42 0.00 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.80 7.79 -51.93 -0.40 0.39 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.94 7.62 -51.93 -0.40 0.55 16 32 H 0.34 4.10 7.86 -39.29 -0.31 3.79 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 35 H 0.07 1.53 7.84 -51.93 -0.41 1.12 16 36 H 0.04 0.81 6.05 -51.93 -0.31 0.50 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.41 8.05 -51.93 -0.42 1.00 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -29.11 308.94 -9.47 -38.58 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.76 Total: 1.79 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -0.84 Total: -20.64 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.21 Total: -35.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.23 Total: 17.48 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.50 Total: -5.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.11 -9.47 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.419 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds