Wall clock time and date at job start Mon Mar 30 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.71057 * 2 1 4 4 C 1.54255 * 108.86978 * 241.53705 * 2 1 3 5 5 S 1.83954 * 102.58369 * 214.65292 * 4 2 1 6 6 C 1.83954 * 94.80624 * 34.49348 * 5 4 2 7 7 C 1.52336 * 108.86802 * 118.46238 * 2 1 3 8 8 H 1.08998 * 108.86851 * 359.97438 * 7 2 1 9 9 N 1.46900 * 108.86594 * 241.64072 * 7 2 1 10 10 C 1.46894 * 111.00128 * 155.00049 * 9 7 2 11 11 H 1.09001 * 110.43406 * 327.53917 * 10 9 7 12 12 C 1.54266 * 110.48865 * 90.22342 * 10 9 7 13 13 C 1.53867 * 106.60230 * 142.29173 * 12 10 9 14 14 C 1.54271 * 106.59894 * 359.97438 * 13 12 10 15 15 H 1.08997 * 110.59799 * 95.12921 * 14 13 12 16 16 C 1.50698 * 110.48673 * 217.71446 * 14 13 12 17 17 H 1.08008 * 119.99964 * 114.77427 * 16 14 13 18 18 C 1.37881 * 120.00365 * 294.77501 * 16 14 13 19 19 N 1.31509 * 120.00374 * 180.02562 * 18 16 14 20 20 Si 1.86801 * 119.99723 * 359.97438 * 18 16 14 21 21 H 1.48503 * 109.47053 * 90.00010 * 20 18 16 22 22 H 1.48497 * 109.47248 * 210.00334 * 20 18 16 23 23 H 1.48503 * 109.46977 * 330.00445 * 20 18 16 24 24 C 1.54884 * 104.19177 * 336.39157 * 14 13 12 25 25 H 1.09001 * 109.47176 * 301.54237 * 1 2 3 26 26 H 1.09000 * 109.47221 * 61.53713 * 1 2 3 27 27 H 1.09000 * 109.47431 * 181.53880 * 1 2 3 28 28 H 1.09004 * 110.79068 * 332.92478 * 4 2 1 29 29 H 1.09000 * 110.78939 * 96.37513 * 4 2 1 30 30 H 1.09006 * 110.79056 * 207.23563 * 6 5 4 31 31 H 1.09001 * 110.95446 * 83.85362 * 6 5 4 32 32 H 1.00903 * 110.99712 * 278.95155 * 9 7 2 33 33 H 1.09004 * 110.03068 * 261.57165 * 12 10 9 34 34 H 1.08997 * 110.03445 * 22.99892 * 12 10 9 35 35 H 1.09000 * 110.03494 * 240.71502 * 13 12 10 36 36 H 1.09004 * 110.03900 * 119.28465 * 13 12 10 37 37 H 0.96997 * 120.00306 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.76348 * 279.62581 * 24 14 13 39 39 H 1.09007 * 110.91459 * 156.32830 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6957 -1.2832 5 16 3.5560 -1.5462 -0.7102 6 6 2.9047 -1.9170 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 1.1606 -1.0045 1.8540 9 7 2.8010 0.2760 2.0577 10 6 2.7971 -0.0863 3.4813 11 1 1.8551 -0.5644 3.7497 12 6 3.9876 -1.0120 3.8062 13 6 4.4971 -0.6008 5.1986 14 6 3.5989 0.5610 5.6711 15 1 2.7871 0.1886 6.2958 16 6 4.4118 1.5852 6.4202 17 1 4.5312 2.5800 6.0170 18 6 5.0032 1.2523 7.6205 19 7 5.7122 2.1462 8.2745 20 14 4.7961 -0.4681 8.3183 21 1 5.8914 -1.3390 7.8213 22 1 4.8441 -0.4098 9.8013 23 1 3.4880 -1.0231 7.8868 24 6 3.0398 1.1665 4.3596 25 1 -0.3633 0.5376 0.8758 26 1 -0.3634 0.4898 -0.9034 27 1 -0.3634 -1.0273 0.0276 28 1 1.2954 -1.4178 -1.6420 29 1 2.2611 0.0376 -2.0555 30 1 3.7178 -1.9936 1.6918 31 1 2.3076 -2.8289 0.9639 32 1 3.7439 0.3533 1.7069 33 1 3.6592 -2.0513 3.8207 34 1 4.7764 -0.8797 3.0657 35 1 5.5332 -0.2687 5.1340 36 1 4.4160 -1.4405 5.8889 37 1 6.1280 1.9121 9.1190 38 1 3.7722 1.8275 3.8963 39 1 2.1051 1.6963 4.5431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:31 Heat of formation + Delta-G solvation = -14.572370 kcal Electronic energy + Delta-G solvation = -17430.733373 eV Core-core repulsion = 14884.376799 eV Total energy + Delta-G solvation = -2546.356574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94031 -36.84674 -33.49173 -31.96837 -29.45129 -28.41567 -27.53016 -26.57202 -23.91555 -22.64712 -20.52634 -19.50200 -19.08160 -16.82097 -16.64194 -16.02918 -15.27231 -14.77319 -14.61902 -14.10995 -13.79797 -13.39212 -13.00320 -12.89205 -12.58658 -12.49198 -12.40238 -11.98674 -11.78953 -11.54984 -11.22659 -10.99200 -10.89462 -10.68436 -10.30426 -10.07851 -10.00031 -9.92641 -9.67976 -9.40494 -8.94558 -8.52739 -8.25884 -7.83149 -6.04146 -4.02324 1.72972 2.15104 3.29669 3.38365 3.39801 4.12186 4.31951 4.44361 4.70902 4.77065 4.85412 5.04580 5.16838 5.21306 5.30676 5.32252 5.38249 5.41790 5.49849 5.57302 5.63668 5.85169 5.90437 5.97733 6.09004 6.23812 6.37297 6.42902 6.56871 6.74478 6.82730 6.94473 7.20821 7.32360 7.55427 7.60153 7.83017 8.57846 9.01066 9.59203 11.09365 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.039402 B = 0.004826 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.446989 B = 5800.802118 C = 6052.893707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.099 0.901 4 C -0.062 4.062 5 S -0.305 6.305 6 C -0.103 4.103 7 C 0.087 3.913 8 H 0.088 0.912 9 N -0.671 5.671 10 C 0.077 3.923 11 H 0.074 0.926 12 C -0.149 4.149 13 C -0.128 4.128 14 C 0.010 3.990 15 H 0.030 0.970 16 C -0.506 4.506 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.265 1.265 24 C -0.087 4.087 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.347 0.653 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 -7.982 -16.958 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.117 0.883 4 C -0.210 4.210 5 S -0.078 6.078 6 C -0.252 4.252 7 C -0.025 4.025 8 H 0.106 0.894 9 N -0.302 5.302 10 C -0.033 4.033 11 H 0.092 0.908 12 C -0.188 4.188 13 C -0.166 4.166 14 C -0.010 4.010 15 H 0.048 0.952 16 C -0.544 4.544 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.190 1.190 24 C -0.126 4.126 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.782 -7.731 -17.283 20.871 hybrid contribution -0.323 -1.671 1.044 1.997 sum -9.106 -9.402 -16.239 20.857 Atomic orbital electron populations 1.21927 0.94070 1.01733 1.02390 1.21718 0.96534 1.01985 0.90812 0.88270 1.24302 0.95372 1.01036 1.00282 1.88031 1.25686 1.76203 1.17908 1.25258 1.02776 1.02136 0.95068 1.22232 0.96325 0.88773 0.95201 0.89366 1.60874 1.19645 1.47139 1.02496 1.22700 0.97167 0.96860 0.86540 0.90827 1.22923 0.98036 0.98439 0.99402 1.22575 1.01700 0.98830 0.93493 1.19966 0.94557 0.93280 0.93157 0.95196 1.21053 1.30218 0.98565 1.04598 0.90821 1.25002 0.94749 0.96735 0.96650 1.69904 1.34128 1.34217 1.16004 0.86916 0.79154 0.85607 0.77624 1.20463 1.22057 1.19032 1.22356 1.00072 0.95126 0.95013 0.91731 0.92405 0.92846 0.89484 0.87927 0.87009 0.89484 0.83225 0.93388 0.92473 0.91438 0.94258 0.92773 0.91548 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.60 37.16 0.32 -0.81 16 2 C -0.09 -0.85 2.98 -90.30 -0.27 -1.12 16 3 H 0.10 1.05 7.79 -51.93 -0.40 0.65 16 4 C -0.06 -0.55 6.92 37.81 0.26 -0.29 16 5 S -0.30 -3.57 23.27 -107.50 -2.50 -6.07 16 6 C -0.10 -1.13 6.75 37.82 0.26 -0.87 16 7 C 0.09 0.95 2.62 -67.39 -0.18 0.78 16 8 H 0.09 0.96 6.79 -51.93 -0.35 0.61 16 9 N -0.67 -8.96 5.86 -97.66 -0.57 -9.53 16 10 C 0.08 1.20 3.15 -66.04 -0.21 0.99 16 11 H 0.07 1.11 7.43 -51.93 -0.39 0.72 16 12 C -0.15 -2.42 4.77 -25.62 -0.12 -2.54 16 13 C -0.13 -2.65 4.89 -25.61 -0.13 -2.78 16 14 C 0.01 0.22 2.28 -90.11 -0.21 0.02 16 15 H 0.03 0.71 7.06 -51.93 -0.37 0.34 16 16 C -0.51 -14.10 8.94 -34.44 -0.31 -14.41 16 17 H 0.07 2.23 8.01 -52.48 -0.42 1.81 16 18 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 20 Si 0.88 21.76 24.88 -169.99 -4.23 17.53 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.27 -6.28 6.42 56.52 0.36 -5.92 16 24 C -0.09 -1.69 5.96 -24.73 -0.15 -1.84 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.11 1.34 5.22 -51.93 -0.27 1.07 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.35 4.81 7.84 -39.29 -0.31 4.50 16 33 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 34 H 0.06 0.89 7.01 -51.93 -0.36 0.52 16 35 H 0.07 1.51 7.83 -51.93 -0.41 1.10 16 36 H 0.04 0.82 6.05 -51.93 -0.31 0.50 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 39 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -29.24 303.86 -9.31 -38.55 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.54 Total: 2.90 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.82 Total: -20.97 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.20 Total: -36.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.23 Total: 17.53 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.50 Total: -6.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.24 -9.31 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.981 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds