Wall clock time and date at job start Mon Mar 30 2020 06:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.71057 * 2 1 4 4 C 1.54255 * 108.86978 * 241.53705 * 2 1 3 5 5 S 1.83954 * 102.58369 * 214.65292 * 4 2 1 6 6 C 1.83954 * 94.80624 * 34.49348 * 5 4 2 7 7 C 1.52336 * 108.86802 * 118.46238 * 2 1 3 8 8 H 1.08998 * 108.86851 * 359.97438 * 7 2 1 9 9 N 1.46900 * 108.86594 * 241.64072 * 7 2 1 10 10 C 1.46894 * 111.00128 * 155.00049 * 9 7 2 11 11 H 1.09001 * 110.43406 * 327.53917 * 10 9 7 12 12 C 1.54266 * 110.48865 * 90.22342 * 10 9 7 13 13 C 1.53867 * 106.60230 * 142.29173 * 12 10 9 14 14 C 1.54271 * 106.59894 * 359.97438 * 13 12 10 15 15 H 1.08997 * 110.59799 * 95.12921 * 14 13 12 16 16 C 1.50698 * 110.48673 * 217.71446 * 14 13 12 17 17 H 1.08008 * 119.99964 * 114.77427 * 16 14 13 18 18 C 1.37881 * 120.00365 * 294.77501 * 16 14 13 19 19 N 1.31509 * 120.00374 * 180.02562 * 18 16 14 20 20 Si 1.86801 * 119.99723 * 359.97438 * 18 16 14 21 21 H 1.48503 * 109.47053 * 90.00010 * 20 18 16 22 22 H 1.48497 * 109.47248 * 210.00334 * 20 18 16 23 23 H 1.48503 * 109.46977 * 330.00445 * 20 18 16 24 24 C 1.54884 * 104.19177 * 336.39157 * 14 13 12 25 25 H 1.09001 * 109.47176 * 301.54237 * 1 2 3 26 26 H 1.09000 * 109.47221 * 61.53713 * 1 2 3 27 27 H 1.09000 * 109.47431 * 181.53880 * 1 2 3 28 28 H 1.09004 * 110.79068 * 332.92478 * 4 2 1 29 29 H 1.09000 * 110.78939 * 96.37513 * 4 2 1 30 30 H 1.09006 * 110.79056 * 207.23563 * 6 5 4 31 31 H 1.09001 * 110.95446 * 83.85362 * 6 5 4 32 32 H 1.00903 * 110.99712 * 278.95155 * 9 7 2 33 33 H 1.09004 * 110.03068 * 261.57165 * 12 10 9 34 34 H 1.08997 * 110.03445 * 22.99892 * 12 10 9 35 35 H 1.09000 * 110.03494 * 240.71502 * 13 12 10 36 36 H 1.09004 * 110.03900 * 119.28465 * 13 12 10 37 37 H 0.96997 * 120.00306 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.76348 * 279.62581 * 24 14 13 39 39 H 1.09007 * 110.91459 * 156.32830 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6957 -1.2832 5 16 3.5560 -1.5462 -0.7102 6 6 2.9047 -1.9170 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 1.1606 -1.0045 1.8540 9 7 2.8010 0.2760 2.0577 10 6 2.7971 -0.0863 3.4813 11 1 1.8551 -0.5644 3.7497 12 6 3.9876 -1.0120 3.8062 13 6 4.4971 -0.6008 5.1986 14 6 3.5989 0.5610 5.6711 15 1 2.7871 0.1886 6.2958 16 6 4.4118 1.5852 6.4202 17 1 4.5312 2.5800 6.0170 18 6 5.0032 1.2523 7.6205 19 7 5.7122 2.1462 8.2745 20 14 4.7961 -0.4681 8.3183 21 1 5.8914 -1.3390 7.8213 22 1 4.8441 -0.4098 9.8013 23 1 3.4880 -1.0231 7.8868 24 6 3.0398 1.1665 4.3596 25 1 -0.3633 0.5376 0.8758 26 1 -0.3634 0.4898 -0.9034 27 1 -0.3634 -1.0273 0.0276 28 1 1.2954 -1.4178 -1.6420 29 1 2.2611 0.0376 -2.0555 30 1 3.7178 -1.9936 1.6918 31 1 2.3076 -2.8289 0.9639 32 1 3.7439 0.3533 1.7069 33 1 3.6592 -2.0513 3.8207 34 1 4.7764 -0.8797 3.0657 35 1 5.5332 -0.2687 5.1340 36 1 4.4160 -1.4405 5.8889 37 1 6.1280 1.9121 9.1190 38 1 3.7722 1.8275 3.8963 39 1 2.1051 1.6963 4.5431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:30 Heat of formation + Delta-G solvation = -32.841042 kcal Electronic energy + Delta-G solvation = -17431.525562 eV Core-core repulsion = 14884.376799 eV Total energy + Delta-G solvation = -2547.148763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10837 -38.05828 -35.00257 -33.68321 -30.53257 -30.04648 -28.38755 -27.81498 -25.50227 -23.76721 -21.65951 -21.02508 -20.39505 -18.71000 -17.66350 -17.07288 -16.73115 -16.10853 -15.84414 -15.18041 -15.09405 -14.78455 -14.25478 -14.13366 -13.91288 -13.66292 -13.55789 -13.14178 -12.83517 -12.77632 -12.55843 -12.37043 -12.05825 -11.92462 -11.67674 -11.58201 -11.51564 -11.48680 -11.13665 -10.95286 -10.77546 -10.70294 -9.35990 -8.72224 -8.27555 -6.30319 0.93006 1.32738 1.35383 1.37728 1.45888 2.35262 3.07215 3.12745 3.52275 3.86289 3.89181 3.98510 4.06883 4.09737 4.14016 4.30597 4.45210 4.60334 4.63760 4.67827 4.72162 4.79824 4.81740 4.91899 4.94568 5.03531 5.07907 5.16925 5.21964 5.26324 5.35959 5.43934 5.54116 5.66854 5.83418 6.21540 6.35439 6.45693 6.77314 7.34935 8.89820 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.039402 B = 0.004826 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.446989 B = 5800.802118 C = 6052.893707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.085 0.915 4 C -0.045 4.045 5 S -0.357 6.357 6 C -0.092 4.092 7 C 0.089 3.911 8 H 0.098 0.902 9 N -0.674 5.674 10 C 0.094 3.906 11 H 0.091 0.909 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.004 3.996 15 H 0.031 0.969 16 C -0.512 4.512 17 H 0.029 0.971 18 C 0.009 3.991 19 N -0.956 5.956 20 Si 0.943 3.057 21 H -0.268 1.268 22 H -0.295 1.295 23 H -0.242 1.242 24 C -0.085 4.085 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.344 0.656 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.045 0.955 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 -10.581 -18.443 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.193 4.193 5 S -0.131 6.131 6 C -0.242 4.242 7 C -0.023 4.023 8 H 0.116 0.884 9 N -0.304 5.304 10 C -0.016 4.016 11 H 0.110 0.890 12 C -0.177 4.177 13 C -0.165 4.165 14 C -0.016 4.016 15 H 0.049 0.951 16 C -0.550 4.550 17 H 0.047 0.953 18 C -0.187 4.187 19 N -0.597 5.597 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.222 1.222 23 H -0.165 1.165 24 C -0.123 4.123 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.802 -10.334 -18.803 24.021 hybrid contribution 0.302 -0.718 1.449 1.644 sum -10.500 -11.052 -17.354 23.099 Atomic orbital electron populations 1.21891 0.92552 1.02521 1.02698 1.21650 0.97648 1.00998 0.90408 0.89628 1.24370 0.93740 1.01112 1.00106 1.88257 1.28464 1.76982 1.19354 1.25203 1.02431 1.02683 0.93835 1.22333 0.96046 0.88347 0.95562 0.88409 1.60784 1.19769 1.48282 1.01532 1.22439 0.97625 0.94239 0.87271 0.89046 1.22856 0.98374 1.00044 0.96438 1.22422 0.99839 0.97763 0.96499 1.19948 0.94273 0.93117 0.94234 0.95102 1.21399 1.30478 0.98080 1.05048 0.95312 1.25904 0.94447 1.01226 0.97127 1.70068 1.35972 1.36839 1.16782 0.85868 0.80443 0.80319 0.76559 1.19336 1.22167 1.16504 1.22237 0.99234 0.96630 0.94238 0.92515 0.91171 0.91714 0.87722 0.87043 0.87904 0.87858 0.83552 0.90591 0.91852 0.93971 0.93794 0.92728 0.93575 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.60 71.98 0.62 -1.09 16 2 C -0.09 -1.38 2.98 -10.59 -0.03 -1.41 16 3 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 4 C -0.05 -0.67 6.92 72.41 0.50 -0.17 16 5 S -0.36 -7.63 23.27 -56.49 -1.31 -8.94 16 6 C -0.09 -1.73 6.75 72.41 0.49 -1.24 16 7 C 0.09 1.66 2.62 45.12 0.12 1.78 16 8 H 0.10 1.70 6.79 -2.39 -0.02 1.69 16 9 N -0.67 -16.50 5.86 -462.90 -2.71 -19.21 16 10 C 0.09 2.69 3.15 46.00 0.15 2.84 16 11 H 0.09 2.36 7.43 -2.39 -0.02 2.34 16 12 C -0.14 -4.10 4.77 31.32 0.15 -3.95 16 13 C -0.13 -5.08 4.89 31.32 0.15 -4.93 16 14 C 0.00 0.16 2.28 -10.47 -0.02 0.14 16 15 H 0.03 1.40 7.06 -2.39 -0.02 1.39 16 16 C -0.51 -29.52 8.94 25.60 0.23 -29.29 16 17 H 0.03 1.85 8.01 -2.91 -0.02 1.83 16 18 C 0.01 0.54 5.46 84.66 0.46 1.00 16 19 N -0.96 -60.90 13.96 21.45 0.30 -60.60 16 20 Si 0.94 44.78 24.88 68.60 1.71 46.48 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.24 -10.45 6.42 99.48 0.64 -9.82 16 24 C -0.09 -3.25 5.96 31.89 0.19 -3.06 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 1.22 7.86 -2.39 -0.02 1.20 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.14 5.22 -2.38 -0.01 2.13 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.34 8.99 7.84 -89.69 -0.70 8.29 16 33 H 0.08 1.89 7.83 -2.38 -0.02 1.87 16 34 H 0.06 1.82 7.01 -2.39 -0.02 1.81 16 35 H 0.04 1.87 7.83 -2.39 -0.02 1.85 16 36 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 37 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 38 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -65.62 303.86 1.23 -64.39 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.25 Total: 17.28 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.00 Total: -39.40 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.41 Total: -79.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.71 Total: 46.48 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.31 Total: -8.94 kcal Total: -65.62 1.23 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.545 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds