Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 108.71425 * 2 1 4 4 C 1.54264 * 108.86535 * 241.53448 * 2 1 3 5 5 S 1.83958 * 102.57989 * 214.65635 * 4 2 1 6 6 C 1.83957 * 94.80810 * 34.49469 * 5 4 2 7 7 C 1.52335 * 108.86706 * 118.46294 * 2 1 3 8 8 H 1.08999 * 108.75434 * 241.55468 * 7 2 1 9 9 N 1.46900 * 108.87052 * 359.97438 * 7 2 1 10 10 C 1.46900 * 111.00339 * 209.53317 * 9 7 2 11 11 H 1.09003 * 110.53346 * 327.61386 * 10 9 7 12 12 C 1.54463 * 110.65967 * 90.23953 * 10 9 7 13 13 C 1.53877 * 106.68421 * 142.05489 * 12 10 9 14 14 C 1.54265 * 106.59605 * 0.15594 * 13 12 10 15 15 H 1.09004 * 110.59809 * 95.12740 * 14 13 12 16 16 C 1.50701 * 110.48496 * 217.70899 * 14 13 12 17 17 H 1.08007 * 119.99597 * 114.77641 * 16 14 13 18 18 C 1.37869 * 120.00267 * 294.77624 * 16 14 13 19 19 N 1.31511 * 120.00107 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 120.00208 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46764 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47102 * 119.99990 * 20 18 16 23 23 H 1.48498 * 109.47462 * 240.00746 * 20 18 16 24 24 C 1.54887 * 104.20056 * 336.39127 * 14 13 12 25 25 H 1.09001 * 109.46744 * 301.54383 * 1 2 3 26 26 H 1.09001 * 109.46680 * 61.53525 * 1 2 3 27 27 H 1.08995 * 109.47682 * 181.54055 * 1 2 3 28 28 H 1.09001 * 110.78306 * 96.38453 * 4 2 1 29 29 H 1.08996 * 110.95115 * 333.00488 * 4 2 1 30 30 H 1.09004 * 110.78530 * 207.23253 * 6 5 4 31 31 H 1.08994 * 110.94883 * 83.85740 * 6 5 4 32 32 H 1.00907 * 110.99387 * 85.57849 * 9 7 2 33 33 H 1.08999 * 109.85715 * 22.81285 * 12 10 9 34 34 H 1.08997 * 110.12155 * 261.43972 * 12 10 9 35 35 H 1.08995 * 110.02951 * 240.87549 * 13 12 10 36 36 H 1.08993 * 110.03177 * 119.44086 * 13 12 10 37 37 H 0.97007 * 120.00152 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.75856 * 156.25785 * 24 14 13 39 39 H 1.09006 * 110.75640 * 279.44771 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8797 1.0323 0.0000 4 6 2.0288 -0.6958 -1.2833 5 16 3.5559 -1.5464 -0.7102 6 6 2.9046 -1.9171 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 2.6011 0.0285 1.8515 9 7 0.8609 -1.1150 2.0580 10 6 1.1751 -1.1239 3.4930 11 1 2.2226 -1.3791 3.6534 12 6 0.8505 0.2451 4.1304 13 6 0.2745 -0.0437 5.5278 14 6 0.2716 -1.5772 5.6948 15 1 1.1711 -1.9081 6.2142 16 6 -0.9601 -2.0244 6.4392 17 1 -1.6986 -2.6366 5.9427 18 6 -1.1444 -1.6520 7.7538 19 7 -0.2455 -0.9061 8.3581 20 14 -2.6716 -2.2056 8.6762 21 1 -3.5207 -3.0291 7.7783 22 1 -2.2714 -3.0132 9.8564 23 1 -3.4364 -1.0153 9.1271 24 6 0.2539 -2.1176 4.2434 25 1 -0.3633 0.5376 0.8758 26 1 -0.3633 0.4898 -0.9035 27 1 -0.3634 -1.0272 0.0276 28 1 2.2611 0.0376 -2.0555 29 1 1.2966 -1.4175 -1.6451 30 1 3.7178 -1.9938 1.6917 31 1 2.3075 -2.8290 0.9639 32 1 0.5302 -2.0187 1.7545 33 1 0.1130 0.7705 3.5237 34 1 1.7578 0.8430 4.2168 35 1 -0.7426 0.3416 5.5991 36 1 0.9021 0.4141 6.2923 37 1 -0.3750 -0.6444 9.2832 38 1 0.6608 -3.1280 4.2023 39 1 -0.7561 -2.0924 3.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -15.426205 kcal Electronic energy + Delta-G solvation = -17399.058673 eV Core-core repulsion = 14852.665074 eV Total energy + Delta-G solvation = -2546.393599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78932 -36.61091 -33.22529 -31.80436 -29.50133 -28.09902 -27.33878 -25.82882 -23.80925 -23.49796 -19.70333 -19.44921 -18.67623 -16.77340 -16.53288 -15.78014 -14.98247 -14.91471 -14.57730 -14.25676 -13.75336 -13.41309 -12.90320 -12.62964 -12.37447 -12.12746 -12.03513 -11.89335 -11.59691 -11.06732 -10.94389 -10.81703 -10.66027 -10.47758 -10.41298 -10.18432 -9.96053 -9.94582 -9.52953 -9.10617 -8.70669 -8.36754 -8.17530 -7.85326 -5.99612 -4.01982 1.74205 2.16693 3.30190 3.38475 3.42102 4.21452 4.38795 4.46297 4.68293 4.90232 4.95799 5.03000 5.30609 5.33927 5.46870 5.48987 5.54029 5.61124 5.71641 5.75095 5.94656 6.02661 6.20790 6.30152 6.49705 6.51445 6.63181 6.76844 6.83217 6.98070 7.14135 7.35057 7.48256 7.57515 7.74517 7.92056 8.03652 8.47884 9.01261 9.62107 11.10329 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.045690 B = 0.004276 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.683173 B = 6546.506738 C = 6645.657458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.060 4.060 5 S -0.312 6.312 6 C -0.089 4.089 7 C 0.087 3.913 8 H 0.089 0.911 9 N -0.668 5.668 10 C 0.076 3.924 11 H 0.041 0.959 12 C -0.113 4.113 13 C -0.096 4.096 14 C 0.051 3.949 15 H 0.028 0.972 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.116 4.116 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.339 0.661 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.258 0.742 38 H 0.042 0.958 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 1.275 -16.244 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.208 4.208 5 S -0.086 6.086 6 C -0.239 4.239 7 C -0.026 4.026 8 H 0.107 0.893 9 N -0.299 5.299 10 C -0.033 4.033 11 H 0.059 0.941 12 C -0.151 4.151 13 C -0.135 4.135 14 C 0.032 3.968 15 H 0.046 0.954 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.154 4.154 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.158 0.842 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.941 1.747 -16.590 17.398 hybrid contribution -1.140 -0.840 1.239 1.882 sum 3.801 0.907 -15.351 15.840 Atomic orbital electron populations 1.21609 0.92747 1.02327 1.01170 1.21621 0.98366 0.99866 0.90930 0.90172 1.24322 0.95090 1.01047 1.00312 1.87942 1.25958 1.76589 1.18097 1.25069 1.02551 1.01796 0.94512 1.22206 0.90394 0.94606 0.95344 0.89318 1.61002 1.31072 1.34064 1.03718 1.22604 0.97388 0.97889 0.85387 0.94145 1.22293 0.99346 0.95179 0.98290 1.22064 0.99553 0.99728 0.92167 1.19377 0.97117 0.91158 0.89132 0.95386 1.21193 1.05584 1.31894 0.96340 0.92670 1.24977 0.96280 0.95113 0.97601 1.69981 1.34412 1.36602 1.11884 0.86610 0.83503 0.78453 0.79873 1.19810 1.21132 1.21083 1.22755 0.98072 0.95743 0.98866 0.90645 0.94233 0.92610 0.88118 0.89269 0.87948 0.89226 0.84186 0.92189 0.94287 0.93048 0.93036 0.93191 0.93883 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 7.89 37.16 0.29 -0.94 16 2 C -0.09 -0.89 3.17 -90.30 -0.29 -1.18 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.06 -0.56 6.92 37.82 0.26 -0.30 16 5 S -0.31 -3.66 23.27 -107.50 -2.50 -6.16 16 6 C -0.09 -1.01 6.86 37.82 0.26 -0.75 16 7 C 0.09 1.01 2.79 -67.39 -0.19 0.82 16 8 H 0.09 1.13 7.77 -51.93 -0.40 0.73 16 9 N -0.67 -8.80 3.82 -97.56 -0.37 -9.17 16 10 C 0.08 1.25 2.92 -65.95 -0.19 1.06 16 11 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 12 C -0.11 -2.06 6.54 -25.51 -0.17 -2.23 16 13 C -0.10 -2.21 5.60 -25.61 -0.14 -2.35 16 14 C 0.05 1.24 2.73 -90.11 -0.25 0.99 16 15 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 16 C -0.51 -13.88 8.36 -34.44 -0.29 -14.17 16 17 H 0.06 1.48 7.77 -52.48 -0.41 1.08 16 18 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -25.57 12.63 55.43 0.70 -24.87 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.12 -2.27 5.64 -24.74 -0.14 -2.41 16 25 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 0.98 7.54 -51.93 -0.39 0.59 16 32 H 0.34 4.25 7.36 -39.29 -0.29 3.96 16 33 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 1.26 7.83 -51.93 -0.41 0.86 16 36 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.29 8.04 -51.93 -0.42 0.88 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -27.59 313.79 -10.24 -37.83 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.84 Total: 1.30 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.93 Total: -19.83 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.33 Total: -34.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.50 Total: -6.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.59 -10.24 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds