Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 108.71425 * 2 1 4 4 C 1.54264 * 108.86535 * 241.53448 * 2 1 3 5 5 S 1.83958 * 102.57989 * 214.65635 * 4 2 1 6 6 C 1.83957 * 94.80810 * 34.49469 * 5 4 2 7 7 C 1.52335 * 108.86706 * 118.46294 * 2 1 3 8 8 H 1.08999 * 108.75434 * 241.55468 * 7 2 1 9 9 N 1.46900 * 108.87052 * 359.97438 * 7 2 1 10 10 C 1.46900 * 111.00339 * 209.53317 * 9 7 2 11 11 H 1.09003 * 110.53346 * 327.61386 * 10 9 7 12 12 C 1.54463 * 110.65967 * 90.23953 * 10 9 7 13 13 C 1.53877 * 106.68421 * 142.05489 * 12 10 9 14 14 C 1.54265 * 106.59605 * 0.15594 * 13 12 10 15 15 H 1.09004 * 110.59809 * 95.12740 * 14 13 12 16 16 C 1.50701 * 110.48496 * 217.70899 * 14 13 12 17 17 H 1.08007 * 119.99597 * 114.77641 * 16 14 13 18 18 C 1.37869 * 120.00267 * 294.77624 * 16 14 13 19 19 N 1.31511 * 120.00107 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 120.00208 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46764 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47102 * 119.99990 * 20 18 16 23 23 H 1.48498 * 109.47462 * 240.00746 * 20 18 16 24 24 C 1.54887 * 104.20056 * 336.39127 * 14 13 12 25 25 H 1.09001 * 109.46744 * 301.54383 * 1 2 3 26 26 H 1.09001 * 109.46680 * 61.53525 * 1 2 3 27 27 H 1.08995 * 109.47682 * 181.54055 * 1 2 3 28 28 H 1.09001 * 110.78306 * 96.38453 * 4 2 1 29 29 H 1.08996 * 110.95115 * 333.00488 * 4 2 1 30 30 H 1.09004 * 110.78530 * 207.23253 * 6 5 4 31 31 H 1.08994 * 110.94883 * 83.85740 * 6 5 4 32 32 H 1.00907 * 110.99387 * 85.57849 * 9 7 2 33 33 H 1.08999 * 109.85715 * 22.81285 * 12 10 9 34 34 H 1.08997 * 110.12155 * 261.43972 * 12 10 9 35 35 H 1.08995 * 110.02951 * 240.87549 * 13 12 10 36 36 H 1.08993 * 110.03177 * 119.44086 * 13 12 10 37 37 H 0.97007 * 120.00152 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.75856 * 156.25785 * 24 14 13 39 39 H 1.09006 * 110.75640 * 279.44771 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8797 1.0323 0.0000 4 6 2.0288 -0.6958 -1.2833 5 16 3.5559 -1.5464 -0.7102 6 6 2.9046 -1.9171 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 2.6011 0.0285 1.8515 9 7 0.8609 -1.1150 2.0580 10 6 1.1751 -1.1239 3.4930 11 1 2.2226 -1.3791 3.6534 12 6 0.8505 0.2451 4.1304 13 6 0.2745 -0.0437 5.5278 14 6 0.2716 -1.5772 5.6948 15 1 1.1711 -1.9081 6.2142 16 6 -0.9601 -2.0244 6.4392 17 1 -1.6986 -2.6366 5.9427 18 6 -1.1444 -1.6520 7.7538 19 7 -0.2455 -0.9061 8.3581 20 14 -2.6716 -2.2056 8.6762 21 1 -3.5207 -3.0291 7.7783 22 1 -2.2714 -3.0132 9.8564 23 1 -3.4364 -1.0153 9.1271 24 6 0.2539 -2.1176 4.2434 25 1 -0.3633 0.5376 0.8758 26 1 -0.3633 0.4898 -0.9035 27 1 -0.3634 -1.0272 0.0276 28 1 2.2611 0.0376 -2.0555 29 1 1.2966 -1.4175 -1.6451 30 1 3.7178 -1.9938 1.6917 31 1 2.3075 -2.8290 0.9639 32 1 0.5302 -2.0187 1.7545 33 1 0.1130 0.7705 3.5237 34 1 1.7578 0.8430 4.2168 35 1 -0.7426 0.3416 5.5991 36 1 0.9021 0.4141 6.2923 37 1 -0.3750 -0.6444 9.2832 38 1 0.6608 -3.1280 4.2023 39 1 -0.7561 -2.0924 3.8341 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -29.493175 kcal Electronic energy + Delta-G solvation = -17399.668662 eV Core-core repulsion = 14852.665074 eV Total energy + Delta-G solvation = -2547.003588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98205 -38.00831 -34.85833 -33.32100 -30.60067 -29.83902 -28.43669 -27.16693 -25.46722 -24.60859 -21.25687 -20.81032 -19.99638 -18.37907 -17.62264 -17.12291 -16.54774 -16.35283 -15.91930 -15.45631 -14.81170 -14.55267 -14.32689 -14.02688 -13.74887 -13.52377 -13.03880 -12.96889 -12.92907 -12.79222 -12.58688 -12.31722 -12.00678 -11.80088 -11.72362 -11.59919 -11.44820 -11.37138 -10.95640 -10.82462 -10.71665 -10.46883 -9.30185 -8.76416 -8.11219 -6.20307 0.89081 1.34424 1.40049 1.42160 1.53219 2.44197 3.16006 3.20461 3.48346 3.88722 3.93053 4.00829 4.12305 4.15296 4.23426 4.37084 4.53692 4.63561 4.69176 4.73459 4.84910 4.90442 4.94486 5.01154 5.14432 5.19160 5.22814 5.27225 5.40332 5.46561 5.52392 5.68439 5.70624 5.92604 6.00603 6.21153 6.41989 6.49254 6.92037 7.47367 8.98327 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.045690 B = 0.004276 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.683173 B = 6546.506738 C = 6645.657458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 H 0.084 0.916 4 C -0.045 4.045 5 S -0.347 6.347 6 C -0.082 4.082 7 C 0.090 3.910 8 H 0.079 0.921 9 N -0.660 5.660 10 C 0.094 3.906 11 H 0.045 0.955 12 C -0.102 4.102 13 C -0.088 4.088 14 C 0.039 3.961 15 H -0.004 1.004 16 C -0.528 4.528 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.951 3.049 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.105 4.105 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.347 0.653 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.026 0.974 36 H 0.023 0.977 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 1.069 -18.145 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.103 4.103 3 H 0.103 0.897 4 C -0.193 4.193 5 S -0.121 6.121 6 C -0.232 4.232 7 C -0.022 4.022 8 H 0.098 0.902 9 N -0.292 5.292 10 C -0.015 4.015 11 H 0.062 0.938 12 C -0.140 4.140 13 C -0.126 4.126 14 C 0.020 3.980 15 H 0.014 0.986 16 C -0.566 4.566 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.777 3.223 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.379 1.531 -18.515 19.087 hybrid contribution -0.955 -0.771 1.820 2.195 sum 3.425 0.760 -16.695 17.060 Atomic orbital electron populations 1.21540 0.92526 1.02156 1.01141 1.21565 0.98342 0.99935 0.90489 0.89747 1.24377 0.93620 1.01192 1.00126 1.88114 1.28051 1.77221 1.18716 1.24997 1.02379 1.01742 0.94102 1.22232 0.89669 0.94605 0.95698 0.90223 1.60921 1.31818 1.34669 1.01755 1.22268 0.96723 0.95442 0.87108 0.93750 1.22154 0.99799 0.96643 0.95430 1.21855 0.97805 0.98534 0.94452 1.19384 0.94655 0.92270 0.91681 0.98604 1.21591 1.06450 1.31642 0.96957 0.92784 1.25764 0.99147 0.95276 0.98639 1.70108 1.36211 1.37774 1.12125 0.85607 0.80033 0.78072 0.78575 1.18911 1.20789 1.20798 1.22560 0.98884 0.96861 0.95966 0.92483 0.92600 0.92696 0.86471 0.88233 0.88233 0.88661 0.83251 0.91350 0.93011 0.95462 0.95800 0.93236 0.92916 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 7.89 71.98 0.57 -1.45 16 2 C -0.08 -1.45 3.17 -10.58 -0.03 -1.48 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 4 C -0.05 -0.71 6.92 72.41 0.50 -0.21 16 5 S -0.35 -7.44 23.27 -56.49 -1.31 -8.76 16 6 C -0.08 -1.69 6.86 72.41 0.50 -1.19 16 7 C 0.09 1.88 2.79 45.12 0.13 2.01 16 8 H 0.08 1.86 7.77 -2.39 -0.02 1.84 16 9 N -0.66 -15.91 3.82 -462.58 -1.77 -17.67 16 10 C 0.09 2.96 2.92 46.06 0.13 3.10 16 11 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 12 C -0.10 -3.65 6.54 31.39 0.21 -3.44 16 13 C -0.09 -4.12 5.60 31.32 0.18 -3.95 16 14 C 0.04 1.94 2.73 -10.47 -0.03 1.91 16 15 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 16 C -0.53 -29.09 8.36 25.60 0.21 -28.87 16 17 H 0.05 2.91 7.77 -2.91 -0.02 2.89 16 18 C 0.01 0.56 5.35 84.65 0.45 1.02 16 19 N -0.92 -54.40 12.63 21.44 0.27 -54.13 16 20 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 C -0.10 -4.00 5.64 31.88 0.18 -3.82 16 25 H 0.06 1.24 7.68 -2.39 -0.02 1.22 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.98 7.42 -2.39 -0.02 0.96 16 28 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 30 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.09 1.85 7.54 -2.39 -0.02 1.83 16 32 H 0.35 7.75 7.36 -89.69 -0.66 7.09 16 33 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.36 7.83 -2.39 -0.02 1.34 16 36 H 0.02 1.20 8.06 -2.39 -0.02 1.18 16 37 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.44 8.04 -2.38 -0.02 2.43 16 Total: -1.00 -60.08 313.79 2.55 -57.53 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.35 Total: 13.53 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 2.99 Total: -36.40 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.50 Total: -71.80 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.31 Total: -8.76 kcal Total: -60.08 2.55 -57.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.039 kcal (2) G-P(sol) polarization free energy of solvation -60.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds