Wall clock time and date at job start Mon Mar 30 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 102.99902 * 2 1 4 4 C 1.52992 * 115.54969 * 65.45532 * 3 2 1 5 5 N 1.46906 * 109.47426 * 35.21406 * 4 3 2 6 6 C 1.46897 * 111.00034 * 175.71402 * 5 4 3 7 7 H 1.08996 * 110.44091 * 323.91159 * 6 5 4 8 8 C 1.54274 * 110.48518 * 86.45592 * 6 5 4 9 9 C 1.53873 * 106.59809 * 142.41923 * 8 6 5 10 10 C 1.54261 * 106.60000 * 359.97438 * 9 8 6 11 11 H 1.09003 * 110.48856 * 95.20183 * 10 9 8 12 12 C 1.50702 * 110.48749 * 217.71127 * 10 9 8 13 13 H 1.08002 * 119.99482 * 118.54711 * 12 10 9 14 14 C 1.37865 * 120.00173 * 298.54629 * 12 10 9 15 15 N 1.31523 * 120.00089 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00207 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47444 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47158 * 300.00204 * 16 14 12 19 19 H 1.48505 * 109.47358 * 60.00133 * 16 14 12 20 20 C 1.54893 * 110.59557 * 201.29110 * 6 5 4 21 21 C 1.52994 * 117.49521 * 211.12620 * 3 2 1 22 22 C 1.53000 * 117.49824 * 279.78666 * 3 2 1 23 23 H 1.08993 * 109.47474 * 294.95808 * 1 2 3 24 24 H 1.09000 * 109.47467 * 54.96152 * 1 2 3 25 25 H 1.09000 * 109.47173 * 174.95604 * 1 2 3 26 26 H 1.08999 * 109.47537 * 275.21159 * 4 3 2 27 27 H 1.08999 * 109.47239 * 155.21086 * 4 3 2 28 28 H 1.00890 * 110.99968 * 51.75613 * 5 4 3 29 29 H 1.08991 * 110.03369 * 23.12940 * 8 6 5 30 30 H 1.08999 * 110.06905 * 261.72593 * 8 6 5 31 31 H 1.09001 * 110.03041 * 240.71086 * 9 8 6 32 32 H 1.09003 * 110.07206 * 119.30429 * 9 8 6 33 33 H 0.96998 * 120.00091 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.75365 * 85.01515 * 20 6 5 35 35 H 1.08997 * 110.75570 * 321.63986 * 20 6 5 36 36 H 1.09006 * 117.49822 * 215.00185 * 21 3 2 37 37 H 1.08998 * 117.50770 * 0.02562 * 21 3 2 38 38 H 1.09007 * 117.49877 * 359.97384 * 22 3 2 39 39 H 1.09000 * 117.49965 * 144.97303 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8118 2.5394 1.2556 5 7 1.9611 1.6740 2.4332 6 6 1.6730 2.4130 3.6696 7 1 2.0258 3.4412 3.5895 8 6 0.1615 2.3832 3.9767 9 6 0.0257 2.2565 5.5042 10 6 1.4593 2.2132 6.0720 11 1 1.7772 3.2087 6.3820 12 6 1.5394 1.2512 7.2293 13 1 2.1899 0.3909 7.1722 14 6 0.7825 1.4693 8.3607 15 7 -0.0100 2.5167 8.4299 16 14 0.8812 0.2766 9.7949 17 1 -0.0234 0.7321 10.8809 18 1 0.4689 -1.0764 9.3427 19 1 2.2764 0.2255 10.3011 20 6 2.3221 1.7106 4.8881 21 6 3.5129 2.1944 -0.7015 22 6 2.1562 2.5077 -1.3374 23 1 -0.3634 0.4336 0.9316 24 1 -0.3634 0.5900 -0.8414 25 1 -0.3633 -1.0237 -0.0904 26 1 0.7721 2.8539 1.1653 27 1 2.4484 3.4171 1.3667 28 1 2.8814 1.2616 2.4645 29 1 -0.3019 1.5261 3.4883 30 1 -0.3079 3.3058 3.6353 31 1 -0.5037 1.3378 5.7571 32 1 -0.5091 3.1177 5.9049 33 1 -0.5428 2.6700 9.2258 34 1 3.3597 2.0227 5.0062 35 1 2.2519 0.6272 4.7919 36 1 4.0700 3.0254 -0.2685 37 1 4.1168 1.4134 -1.1635 38 1 1.8681 1.9325 -2.2174 39 1 1.8202 3.5445 -1.3228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449447052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:39 Heat of formation + Delta-G solvation = 11.900249 kcal Electronic energy + Delta-G solvation = -17060.579733 eV Core-core repulsion = 14515.371098 eV Total energy + Delta-G solvation = -2545.208635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.31741 -37.09124 -33.83242 -31.86580 -28.79053 -28.03957 -27.48407 -24.72136 -23.34043 -22.64692 -21.06919 -19.29472 -18.87745 -16.62799 -16.24392 -15.34988 -15.22296 -14.66104 -14.46348 -14.06932 -13.78108 -13.35783 -13.20229 -12.97930 -12.39149 -12.25001 -11.99552 -11.73392 -11.59681 -11.09903 -10.93089 -10.72589 -10.47236 -10.46671 -10.24210 -10.01842 -9.84089 -9.70180 -9.43261 -9.05062 -8.65109 -8.31136 -8.03452 -7.39040 -5.94325 -3.96663 1.79753 2.60115 3.36474 3.40711 3.43764 3.47941 4.25825 4.49963 4.63143 4.66889 4.93008 5.22791 5.33009 5.36569 5.37413 5.41028 5.54639 5.60473 5.64998 5.77352 5.78746 5.86330 5.90884 6.03983 6.35419 6.60981 6.70355 6.86483 6.91839 7.06508 7.24782 7.43191 7.61434 7.76408 7.83866 7.99544 8.09736 8.53863 9.05904 9.66948 11.15332 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037076 B = 0.004354 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.034211 B = 6429.746523 C = 6580.289674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.183 6.183 3 C -0.114 4.114 4 C 0.097 3.903 5 N -0.667 5.667 6 C 0.079 3.921 7 H 0.035 0.965 8 C -0.113 4.113 9 C -0.093 4.093 10 C 0.051 3.949 11 H 0.025 0.975 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.289 1.289 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.113 4.113 21 C -0.140 4.140 22 C -0.158 4.158 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.341 0.659 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.259 0.741 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 0.037 -18.574 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S 0.047 5.953 3 C -0.225 4.225 4 C -0.035 4.035 5 N -0.299 5.299 6 C -0.030 4.030 7 H 0.053 0.947 8 C -0.151 4.151 9 C -0.132 4.132 10 C 0.032 3.968 11 H 0.043 0.957 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.151 4.151 21 C -0.179 4.179 22 C -0.198 4.198 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.160 0.840 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.669 -1.055 -18.482 18.704 hybrid contribution -0.162 1.075 0.974 1.460 sum 2.507 0.020 -17.508 17.686 Atomic orbital electron populations 1.23321 0.94833 1.05585 1.05257 1.86150 1.07136 1.04977 1.97045 1.23718 1.06495 0.95995 0.96258 1.21530 1.00627 0.92926 0.88370 1.60744 1.35098 1.33186 1.00844 1.22519 0.97273 0.94544 0.88707 0.94739 1.22260 0.94284 0.99397 0.99184 1.22019 1.00309 1.00928 0.89918 1.19368 0.90326 0.96101 0.90987 0.95722 1.21134 1.24685 1.09394 0.99786 0.92736 1.24970 0.95410 0.95305 0.98280 1.69973 1.26931 1.27497 1.28596 0.86720 0.77828 0.81590 0.82207 1.21424 1.20290 1.20368 1.22710 0.97733 1.00072 0.94626 1.23028 0.90046 1.02779 1.02053 1.23269 1.00566 1.01093 0.94903 0.89582 0.91300 0.88738 0.91041 0.94903 0.83994 0.92330 0.94551 0.93050 0.92999 0.93152 0.93960 0.91459 0.88008 0.87987 0.87888 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.74 101.05 1.09 -0.26 16 2 S -0.18 -2.29 21.45 -107.50 -2.31 -4.59 16 3 C -0.11 -1.28 2.29 -90.63 -0.21 -1.49 16 4 C 0.10 1.26 5.72 -3.82 -0.02 1.24 16 5 N -0.67 -10.24 5.44 -104.97 -0.57 -10.81 16 6 C 0.08 1.42 3.17 -66.05 -0.21 1.21 16 7 H 0.03 0.62 7.81 -51.93 -0.41 0.22 16 8 C -0.11 -2.20 6.48 -25.61 -0.17 -2.37 16 9 C -0.09 -2.23 5.40 -25.62 -0.14 -2.36 16 10 C 0.05 1.29 2.79 -90.12 -0.25 1.04 16 11 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.51 -14.27 8.40 -34.44 -0.29 -14.56 16 13 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 14 C 0.06 1.74 5.33 -17.82 -0.09 1.64 16 15 N -0.89 -25.99 12.35 55.43 0.68 -25.31 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.11 -2.37 5.70 -24.75 -0.14 -2.51 16 21 C -0.14 -1.32 9.94 -26.70 -0.27 -1.58 16 22 C -0.16 -1.42 10.02 -26.69 -0.27 -1.68 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 25 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.42 7.74 -51.93 -0.40 0.01 16 28 H 0.34 5.21 8.41 -39.30 -0.33 4.88 16 29 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.32 7.83 -51.93 -0.41 0.91 16 32 H 0.05 1.32 7.93 -51.93 -0.41 0.90 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 36 H 0.10 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -28.47 327.45 -10.23 -38.70 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.98 Total: 2.18 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.97 Total: -21.69 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.11 Total: -36.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.31 Total: -4.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.47 -10.23 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.596 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds