Wall clock time and date at job start Mon Mar 30 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 102.99902 * 2 1 4 4 C 1.52992 * 115.54969 * 65.45532 * 3 2 1 5 5 N 1.46906 * 109.47426 * 35.21406 * 4 3 2 6 6 C 1.46897 * 111.00034 * 175.71402 * 5 4 3 7 7 H 1.08996 * 110.44091 * 323.91159 * 6 5 4 8 8 C 1.54274 * 110.48518 * 86.45592 * 6 5 4 9 9 C 1.53873 * 106.59809 * 142.41923 * 8 6 5 10 10 C 1.54261 * 106.60000 * 359.97438 * 9 8 6 11 11 H 1.09003 * 110.48856 * 95.20183 * 10 9 8 12 12 C 1.50702 * 110.48749 * 217.71127 * 10 9 8 13 13 H 1.08002 * 119.99482 * 118.54711 * 12 10 9 14 14 C 1.37865 * 120.00173 * 298.54629 * 12 10 9 15 15 N 1.31523 * 120.00089 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00207 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47444 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47158 * 300.00204 * 16 14 12 19 19 H 1.48505 * 109.47358 * 60.00133 * 16 14 12 20 20 C 1.54893 * 110.59557 * 201.29110 * 6 5 4 21 21 C 1.52994 * 117.49521 * 211.12620 * 3 2 1 22 22 C 1.53000 * 117.49824 * 279.78666 * 3 2 1 23 23 H 1.08993 * 109.47474 * 294.95808 * 1 2 3 24 24 H 1.09000 * 109.47467 * 54.96152 * 1 2 3 25 25 H 1.09000 * 109.47173 * 174.95604 * 1 2 3 26 26 H 1.08999 * 109.47537 * 275.21159 * 4 3 2 27 27 H 1.08999 * 109.47239 * 155.21086 * 4 3 2 28 28 H 1.00890 * 110.99968 * 51.75613 * 5 4 3 29 29 H 1.08991 * 110.03369 * 23.12940 * 8 6 5 30 30 H 1.08999 * 110.06905 * 261.72593 * 8 6 5 31 31 H 1.09001 * 110.03041 * 240.71086 * 9 8 6 32 32 H 1.09003 * 110.07206 * 119.30429 * 9 8 6 33 33 H 0.96998 * 120.00091 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.75365 * 85.01515 * 20 6 5 35 35 H 1.08997 * 110.75570 * 321.63986 * 20 6 5 36 36 H 1.09006 * 117.49822 * 215.00185 * 21 3 2 37 37 H 1.08998 * 117.50770 * 0.02562 * 21 3 2 38 38 H 1.09007 * 117.49877 * 359.97384 * 22 3 2 39 39 H 1.09000 * 117.49965 * 144.97303 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8118 2.5394 1.2556 5 7 1.9611 1.6740 2.4332 6 6 1.6730 2.4130 3.6696 7 1 2.0258 3.4412 3.5895 8 6 0.1615 2.3832 3.9767 9 6 0.0257 2.2565 5.5042 10 6 1.4593 2.2132 6.0720 11 1 1.7772 3.2087 6.3820 12 6 1.5394 1.2512 7.2293 13 1 2.1899 0.3909 7.1722 14 6 0.7825 1.4693 8.3607 15 7 -0.0100 2.5167 8.4299 16 14 0.8812 0.2766 9.7949 17 1 -0.0234 0.7321 10.8809 18 1 0.4689 -1.0764 9.3427 19 1 2.2764 0.2255 10.3011 20 6 2.3221 1.7106 4.8881 21 6 3.5129 2.1944 -0.7015 22 6 2.1562 2.5077 -1.3374 23 1 -0.3634 0.4336 0.9316 24 1 -0.3634 0.5900 -0.8414 25 1 -0.3633 -1.0237 -0.0904 26 1 0.7721 2.8539 1.1653 27 1 2.4484 3.4171 1.3667 28 1 2.8814 1.2616 2.4645 29 1 -0.3019 1.5261 3.4883 30 1 -0.3079 3.3058 3.6353 31 1 -0.5037 1.3378 5.7571 32 1 -0.5091 3.1177 5.9049 33 1 -0.5428 2.6700 9.2258 34 1 3.3597 2.0227 5.0062 35 1 2.2519 0.6272 4.7919 36 1 4.0700 3.0254 -0.2685 37 1 4.1168 1.4134 -1.1635 38 1 1.8681 1.9325 -2.2174 39 1 1.8202 3.5445 -1.3228 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449447052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:38 Heat of formation + Delta-G solvation = -3.214816 kcal Electronic energy + Delta-G solvation = -17061.235171 eV Core-core repulsion = 14515.371098 eV Total energy + Delta-G solvation = -2545.864073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59373 -38.32773 -35.42455 -33.72809 -29.89936 -29.69769 -28.96774 -26.32583 -25.03356 -23.35545 -22.03863 -20.97078 -20.64244 -18.27483 -17.55687 -16.83031 -16.56138 -16.26363 -15.75031 -15.25342 -14.99206 -14.71550 -14.20633 -14.11910 -13.90091 -13.76890 -13.50344 -13.00285 -12.86300 -12.68203 -12.43494 -12.35875 -12.12374 -11.86723 -11.66649 -11.52527 -11.37163 -11.14347 -10.92540 -10.73242 -10.57256 -10.46024 -9.27596 -8.35743 -8.10614 -6.20230 0.92932 1.41484 1.43146 1.50577 1.73960 2.44450 2.70103 3.20139 3.21070 3.78980 3.82749 3.95933 4.04517 4.12630 4.37037 4.41794 4.46631 4.58267 4.61100 4.70821 4.72733 4.79797 4.90089 4.95847 4.98494 5.03473 5.13089 5.17646 5.19901 5.27689 5.45224 5.51162 5.68717 5.92413 6.00384 6.25904 6.42196 6.55654 6.90689 7.47057 8.98213 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.037076 B = 0.004354 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.034211 B = 6429.746523 C = 6580.289674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.220 6.220 3 C -0.126 4.126 4 C 0.100 3.900 5 N -0.667 5.667 6 C 0.095 3.905 7 H 0.041 0.959 8 C -0.101 4.101 9 C -0.083 4.083 10 C 0.040 3.960 11 H -0.004 1.004 12 C -0.532 4.532 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.952 3.048 17 H -0.284 1.284 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.141 4.141 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.344 0.656 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -0.066 -20.142 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S 0.010 5.990 3 C -0.237 4.237 4 C -0.031 4.031 5 N -0.299 5.299 6 C -0.014 4.014 7 H 0.059 0.941 8 C -0.139 4.139 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.014 0.986 12 C -0.571 4.571 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.778 3.222 17 H -0.210 1.210 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.141 4.141 21 C -0.172 4.172 22 C -0.181 4.181 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.163 0.837 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.268 -1.164 -20.068 20.366 hybrid contribution -0.340 1.126 1.446 1.864 sum 2.927 -0.038 -18.622 18.851 Atomic orbital electron populations 1.23296 0.93593 1.06331 1.04917 1.86265 1.08655 1.07006 1.97107 1.23616 1.08671 0.94721 0.96679 1.21525 1.00649 0.92988 0.87946 1.60649 1.35392 1.33375 1.00457 1.22211 0.95541 0.94735 0.88959 0.94068 1.22110 0.95846 1.00417 0.95552 1.21804 0.98871 0.98337 0.93188 1.19375 0.92031 0.94260 0.92200 0.98569 1.21522 1.24649 1.09810 1.01082 0.92966 1.25757 0.95063 0.96936 1.00944 1.70100 1.27594 1.29044 1.29268 0.85704 0.78113 0.79458 0.78952 1.20993 1.19709 1.19535 1.22516 0.97713 0.99641 0.94182 1.23132 0.89912 1.02927 1.01272 1.23355 0.99756 1.01449 0.93539 0.91317 0.89770 0.87905 0.91473 0.93992 0.83668 0.91935 0.92881 0.95729 0.95432 0.93184 0.92959 0.92251 0.87032 0.87729 0.87154 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 10.74 113.37 1.22 -1.12 16 2 S -0.22 -5.18 21.45 -56.49 -1.21 -6.39 16 3 C -0.13 -2.54 2.29 -10.80 -0.02 -2.56 16 4 C 0.10 2.36 5.72 86.30 0.49 2.85 16 5 N -0.67 -19.31 5.44 -486.03 -2.64 -21.95 16 6 C 0.10 3.31 3.17 45.99 0.15 3.46 16 7 H 0.04 1.40 7.81 -2.39 -0.02 1.39 16 8 C -0.10 -3.87 6.48 31.32 0.20 -3.66 16 9 C -0.08 -4.08 5.40 31.32 0.17 -3.91 16 10 C 0.04 2.08 2.79 -10.47 -0.03 2.05 16 11 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 12 C -0.53 -30.25 8.40 25.60 0.22 -30.03 16 13 H 0.05 2.91 7.77 -2.91 -0.02 2.89 16 14 C 0.01 0.66 5.33 84.65 0.45 1.11 16 15 N -0.92 -54.92 12.35 21.44 0.26 -54.65 16 16 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.10 -4.25 5.70 31.88 0.18 -4.07 16 21 C -0.13 -2.12 9.94 30.62 0.30 -1.82 16 22 C -0.14 -2.07 10.02 30.62 0.31 -1.77 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.04 0.93 7.74 -2.39 -0.02 0.91 16 28 H 0.34 9.88 8.41 -89.70 -0.75 9.12 16 29 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.02 1.29 7.83 -2.39 -0.02 1.27 16 32 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 2.54 8.05 -2.39 -0.02 2.53 16 36 H 0.11 1.57 8.05 -2.38 -0.02 1.55 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -61.71 327.45 2.32 -59.39 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.25 Total: 16.35 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 3.63 Total: -39.48 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -2.38 Total: -76.60 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.21 Total: -6.39 kcal Total: -61.71 2.32 -59.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449447052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.180 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds