Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.57644 * 2 1 4 4 C 1.53094 * 109.57990 * 239.74299 * 2 1 3 5 5 C 1.52580 * 109.95976 * 177.03792 * 4 2 1 6 6 C 1.52577 * 110.72902 * 70.67459 * 5 4 2 7 7 H 1.09002 * 109.39015 * 49.37456 * 6 5 4 8 8 N 1.46901 * 109.39393 * 169.17993 * 6 5 4 9 9 C 1.46900 * 110.99958 * 205.00345 * 8 6 5 10 10 C 1.52999 * 109.46972 * 185.37571 * 9 8 6 11 11 C 1.50703 * 115.55304 * 65.07359 * 10 9 8 12 12 H 1.07999 * 119.99668 * 264.82798 * 11 10 9 13 13 C 1.37874 * 120.00041 * 84.82502 * 11 10 9 14 14 N 1.31519 * 120.00195 * 352.87944 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 172.87063 * 13 11 10 16 16 H 1.48496 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46931 * 120.00153 * 15 13 11 18 18 H 1.48499 * 109.47312 * 240.00525 * 15 13 11 19 19 C 1.53003 * 117.49651 * 279.40367 * 10 9 8 20 20 C 1.53004 * 117.49847 * 210.74391 * 10 9 8 21 21 C 1.53100 * 109.95345 * 289.32649 * 6 5 4 22 22 S 1.81746 * 108.84225 * 63.02555 * 21 6 5 23 23 H 1.08997 * 109.46611 * 180.25777 * 1 2 3 24 24 H 1.08995 * 109.46868 * 300.25518 * 1 2 3 25 25 H 1.08996 * 109.47250 * 60.26086 * 1 2 3 26 26 H 1.09002 * 109.38748 * 56.88568 * 4 2 1 27 27 H 1.09004 * 109.30755 * 297.13436 * 4 2 1 28 28 H 1.09005 * 109.22631 * 310.35473 * 5 4 2 29 29 H 1.09001 * 109.22825 * 190.99862 * 5 4 2 30 30 H 1.00904 * 110.99168 * 328.94977 * 8 6 5 31 31 H 1.08991 * 109.47598 * 65.37160 * 9 8 6 32 32 H 1.09004 * 109.46959 * 305.36845 * 9 8 6 33 33 H 0.96995 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.09000 * 117.49839 * 359.97438 * 19 10 9 35 35 H 1.08996 * 117.49751 * 145.02107 * 19 10 9 36 36 H 1.09001 * 117.49653 * 214.97773 * 20 10 9 37 37 H 1.09004 * 117.49467 * 359.97343 * 20 10 9 38 38 H 1.09003 * 109.57440 * 182.82587 * 21 6 5 39 39 H 1.09000 * 109.57892 * 303.21140 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0430 -0.7268 -1.2459 5 6 3.5670 -0.6682 -1.2926 6 6 4.1749 -1.5522 -0.2077 7 1 3.7131 -2.5389 -0.2439 8 7 5.6202 -1.6814 -0.4367 9 6 6.1386 -2.9208 0.1576 10 6 7.6617 -2.9557 0.0166 11 6 8.4097 -1.8931 0.7800 12 1 8.6956 -0.9751 0.2881 13 6 8.7289 -2.0930 2.1063 14 7 8.2621 -3.1443 2.7439 15 14 9.8248 -0.8707 2.9976 16 1 10.2146 0.2167 2.0645 17 1 9.0871 -0.2930 4.1498 18 1 11.0434 -1.5638 3.4872 19 6 8.2365 -3.3932 -1.3321 20 6 8.3271 -4.3264 -0.1220 21 6 3.9323 -0.9300 1.1700 22 16 2.1422 -0.8639 1.4772 23 1 -0.3632 -1.0277 0.0046 24 1 -0.3633 0.5178 0.8877 25 1 -0.3633 0.5098 -0.8923 26 1 1.6351 -0.2495 -2.1369 27 1 1.7218 -1.7679 -1.2137 28 1 3.8915 0.3612 -1.1403 29 1 3.9097 -1.0111 -2.2688 30 1 5.8357 -1.6349 -1.4214 31 1 5.7064 -3.7790 -0.3568 32 1 5.8706 -2.9572 1.2135 33 1 8.4870 -3.2850 3.6769 34 1 7.5295 -3.6567 -2.1189 35 1 9.1558 -2.9129 -1.6671 36 1 9.3061 -4.4595 0.3385 37 1 7.6798 -5.2034 -0.1124 38 1 4.4119 -1.5399 1.9357 39 1 4.3444 0.0788 1.1929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594504979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = 7.723242 kcal Electronic energy + Delta-G solvation = -17316.609401 eV Core-core repulsion = 14771.219637 eV Total energy + Delta-G solvation = -2545.389763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.98636 -36.49247 -34.35747 -31.84292 -30.82345 -28.35283 -25.95482 -25.08721 -23.37619 -21.45935 -21.08860 -20.23894 -18.92586 -16.85758 -16.05702 -15.12170 -14.90518 -14.61010 -14.40942 -13.95188 -13.85540 -13.46023 -13.17798 -12.69654 -12.67827 -12.28163 -11.78355 -11.55796 -11.31561 -11.26902 -11.00591 -10.93958 -10.83126 -10.61048 -10.57061 -10.38264 -10.12865 -9.53719 -9.38460 -8.77715 -8.36068 -8.04851 -7.62511 -7.50789 -5.94429 -3.95591 1.91827 2.71995 3.34109 3.42617 3.46764 4.48434 4.52864 4.63965 4.83813 4.98790 5.11283 5.20821 5.35957 5.38948 5.46237 5.50530 5.54643 5.67752 5.77832 5.85109 5.94812 5.98502 6.05663 6.17307 6.26535 6.32533 6.43118 6.51014 6.62685 6.74282 6.89009 7.12751 7.47615 7.58709 7.91447 7.99090 8.12962 8.57063 9.03689 9.67589 11.15545 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.005741 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.641702 B = 4875.695700 C = 5499.112215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.129 4.129 6 C 0.090 3.910 7 H 0.045 0.955 8 N -0.664 5.664 9 C 0.108 3.892 10 C 0.052 3.948 11 C -0.468 4.468 12 H 0.059 0.941 13 C 0.068 3.932 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.215 4.215 20 C -0.160 4.160 21 C -0.058 4.058 22 S -0.279 6.279 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.332 0.668 31 H -0.005 1.005 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 4.136 -7.098 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 H 0.104 0.896 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.022 4.022 7 H 0.063 0.937 8 N -0.295 5.295 9 C -0.021 4.021 10 C 0.051 3.949 11 C -0.506 4.506 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.253 4.253 20 C -0.198 4.198 21 C -0.207 4.207 22 S -0.053 6.053 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.013 0.987 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.087 4.053 -5.473 14.753 hybrid contribution 1.055 0.314 -0.946 1.452 sum -12.033 4.367 -6.420 14.320 Atomic orbital electron populations 1.21595 0.92266 1.02870 1.02250 1.23155 0.98981 1.01081 0.94972 0.89592 1.21800 0.95680 1.01288 0.96534 1.21704 0.94581 1.01345 0.99084 1.21590 0.90247 0.97234 0.93114 0.93662 1.60259 1.09591 1.40427 1.19213 1.21596 0.95484 0.85985 0.99014 1.18836 0.89824 0.93943 0.92253 1.20327 1.34153 1.01506 0.94648 0.92252 1.24929 0.95872 0.95305 0.97312 1.70017 1.44086 1.28128 1.10064 0.86634 0.80643 0.81543 0.79751 1.19815 1.21213 1.21253 1.22986 1.02543 1.07627 0.92127 1.22529 1.02195 0.94132 1.00919 1.23515 0.90638 1.05423 1.01082 1.86836 1.09423 1.77803 1.31256 0.91737 0.91906 0.91483 0.91099 0.90838 0.91054 0.91285 0.84913 0.98720 0.90454 0.93365 0.92248 0.90528 0.90097 0.92165 0.87209 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.23 37.16 0.34 -0.87 16 2 C -0.05 -0.60 3.11 -26.68 -0.08 -0.69 16 3 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 4 C -0.11 -1.23 5.04 -26.90 -0.14 -1.36 16 5 C -0.13 -1.63 5.01 -27.16 -0.14 -1.77 16 6 C 0.09 1.43 2.34 -67.88 -0.16 1.27 16 7 H 0.05 0.76 7.77 -51.93 -0.40 0.35 16 8 N -0.66 -12.46 6.18 -106.90 -0.66 -13.12 16 9 C 0.11 2.36 5.28 -3.82 -0.02 2.34 16 10 C 0.05 1.26 1.53 -155.66 -0.24 1.02 16 11 C -0.47 -12.62 8.73 -34.44 -0.30 -12.92 16 12 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 13 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 14 N -0.89 -25.07 12.97 55.43 0.72 -24.35 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.22 -4.62 9.96 -26.69 -0.27 -4.89 16 20 C -0.16 -3.74 9.47 -26.69 -0.25 -4.00 16 21 C -0.06 -0.97 5.96 37.21 0.22 -0.74 16 22 S -0.28 -4.11 21.71 -107.50 -2.33 -6.45 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 28 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 29 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 30 H 0.33 5.81 8.22 -39.29 -0.32 5.49 16 31 H -0.01 -0.11 8.09 -51.93 -0.42 -0.53 16 32 H 0.08 1.91 7.25 -51.93 -0.38 1.53 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.11 2.11 7.30 -51.93 -0.38 1.73 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -27.73 322.94 -10.47 -38.20 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.92 Total: 5.31 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.12 Total: -20.86 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.06 Total: -37.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.33 Total: -6.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.73 -10.47 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594504979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.927 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds