Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.57644 * 2 1 4 4 C 1.53094 * 109.57990 * 239.74299 * 2 1 3 5 5 C 1.52580 * 109.95976 * 177.03792 * 4 2 1 6 6 C 1.52577 * 110.72902 * 70.67459 * 5 4 2 7 7 H 1.09002 * 109.39015 * 49.37456 * 6 5 4 8 8 N 1.46901 * 109.39393 * 169.17993 * 6 5 4 9 9 C 1.46900 * 110.99958 * 205.00345 * 8 6 5 10 10 C 1.52999 * 109.46972 * 185.37571 * 9 8 6 11 11 C 1.50703 * 115.55304 * 65.07359 * 10 9 8 12 12 H 1.07999 * 119.99668 * 264.82798 * 11 10 9 13 13 C 1.37874 * 120.00041 * 84.82502 * 11 10 9 14 14 N 1.31519 * 120.00195 * 352.87944 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 172.87063 * 13 11 10 16 16 H 1.48496 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46931 * 120.00153 * 15 13 11 18 18 H 1.48499 * 109.47312 * 240.00525 * 15 13 11 19 19 C 1.53003 * 117.49651 * 279.40367 * 10 9 8 20 20 C 1.53004 * 117.49847 * 210.74391 * 10 9 8 21 21 C 1.53100 * 109.95345 * 289.32649 * 6 5 4 22 22 S 1.81746 * 108.84225 * 63.02555 * 21 6 5 23 23 H 1.08997 * 109.46611 * 180.25777 * 1 2 3 24 24 H 1.08995 * 109.46868 * 300.25518 * 1 2 3 25 25 H 1.08996 * 109.47250 * 60.26086 * 1 2 3 26 26 H 1.09002 * 109.38748 * 56.88568 * 4 2 1 27 27 H 1.09004 * 109.30755 * 297.13436 * 4 2 1 28 28 H 1.09005 * 109.22631 * 310.35473 * 5 4 2 29 29 H 1.09001 * 109.22825 * 190.99862 * 5 4 2 30 30 H 1.00904 * 110.99168 * 328.94977 * 8 6 5 31 31 H 1.08991 * 109.47598 * 65.37160 * 9 8 6 32 32 H 1.09004 * 109.46959 * 305.36845 * 9 8 6 33 33 H 0.96995 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.09000 * 117.49839 * 359.97438 * 19 10 9 35 35 H 1.08996 * 117.49751 * 145.02107 * 19 10 9 36 36 H 1.09001 * 117.49653 * 214.97773 * 20 10 9 37 37 H 1.09004 * 117.49467 * 359.97343 * 20 10 9 38 38 H 1.09003 * 109.57440 * 182.82587 * 21 6 5 39 39 H 1.09000 * 109.57892 * 303.21140 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0430 -0.7268 -1.2459 5 6 3.5670 -0.6682 -1.2926 6 6 4.1749 -1.5522 -0.2077 7 1 3.7131 -2.5389 -0.2439 8 7 5.6202 -1.6814 -0.4367 9 6 6.1386 -2.9208 0.1576 10 6 7.6617 -2.9557 0.0166 11 6 8.4097 -1.8931 0.7800 12 1 8.6956 -0.9751 0.2881 13 6 8.7289 -2.0930 2.1063 14 7 8.2621 -3.1443 2.7439 15 14 9.8248 -0.8707 2.9976 16 1 10.2146 0.2167 2.0645 17 1 9.0871 -0.2930 4.1498 18 1 11.0434 -1.5638 3.4872 19 6 8.2365 -3.3932 -1.3321 20 6 8.3271 -4.3264 -0.1220 21 6 3.9323 -0.9300 1.1700 22 16 2.1422 -0.8639 1.4772 23 1 -0.3632 -1.0277 0.0046 24 1 -0.3633 0.5178 0.8877 25 1 -0.3633 0.5098 -0.8923 26 1 1.6351 -0.2495 -2.1369 27 1 1.7218 -1.7679 -1.2137 28 1 3.8915 0.3612 -1.1403 29 1 3.9097 -1.0111 -2.2688 30 1 5.8357 -1.6349 -1.4214 31 1 5.7064 -3.7790 -0.3568 32 1 5.8706 -2.9572 1.2135 33 1 8.4870 -3.2850 3.6769 34 1 7.5295 -3.6567 -2.1189 35 1 9.1558 -2.9129 -1.6671 36 1 9.3061 -4.4595 0.3385 37 1 7.6798 -5.2034 -0.1124 38 1 4.4119 -1.5399 1.9357 39 1 4.3444 0.0788 1.1929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594504979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -7.306496 kcal Electronic energy + Delta-G solvation = -17317.261139 eV Core-core repulsion = 14771.219637 eV Total energy + Delta-G solvation = -2546.041502 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.39451 -38.03742 -35.55245 -33.91743 -32.07961 -29.52064 -27.77191 -26.71419 -24.63353 -22.91876 -22.40527 -21.54290 -20.79964 -18.16083 -17.83376 -16.66710 -16.24970 -16.19004 -15.88060 -15.20094 -15.04897 -14.86106 -14.81658 -13.97590 -13.83807 -13.79338 -13.25781 -12.97317 -12.90039 -12.61813 -12.53422 -12.36545 -12.24277 -12.07569 -12.00996 -11.89944 -11.68432 -11.24257 -10.73375 -10.60300 -10.37740 -9.91408 -9.14292 -8.71319 -8.04518 -6.10111 0.78858 1.39649 1.43056 1.52815 1.57224 2.46775 3.24690 3.26512 3.60987 3.69283 3.81607 3.86871 4.00304 4.22729 4.33936 4.40054 4.48957 4.54366 4.62946 4.68867 4.75262 4.80314 4.82923 4.89774 4.99186 5.00998 5.02551 5.08350 5.10568 5.24933 5.28183 5.33000 5.63629 5.74983 5.88199 6.30331 6.49611 6.73931 6.93727 7.55246 9.04766 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.005741 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.641702 B = 4875.695700 C = 5499.112215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.044 4.044 3 H 0.092 0.908 4 C -0.108 4.108 5 C -0.122 4.122 6 C 0.095 3.905 7 H 0.038 0.962 8 N -0.672 5.672 9 C 0.126 3.874 10 C 0.024 3.976 11 C -0.475 4.475 12 H 0.049 0.951 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.941 3.059 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.283 1.283 19 C -0.184 4.184 20 C -0.169 4.169 21 C -0.053 4.053 22 S -0.307 6.307 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.343 0.657 31 H 0.005 0.995 32 H 0.039 0.961 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.017 5.238 -9.282 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.017 4.017 7 H 0.056 0.944 8 N -0.304 5.304 9 C -0.004 4.004 10 C 0.023 3.977 11 C -0.514 4.514 12 H 0.067 0.933 13 C -0.177 4.177 14 N -0.552 5.552 15 Si 0.768 3.232 16 H -0.192 1.192 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.221 4.221 20 C -0.208 4.208 21 C -0.202 4.202 22 S -0.081 6.081 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.163 0.837 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.412 5.164 -7.673 17.125 hybrid contribution 1.421 -0.003 -0.290 1.450 sum -12.991 5.162 -7.964 16.088 Atomic orbital electron populations 1.21610 0.90280 1.03170 1.03563 1.23342 1.00336 1.00682 0.92834 0.88996 1.21784 0.94081 1.01455 0.97367 1.21661 0.95868 1.00289 0.98206 1.21610 0.88577 0.97640 0.93839 0.94439 1.60117 1.11683 1.38810 1.19783 1.21191 0.94268 0.87759 0.97153 1.18950 0.90866 0.93564 0.94314 1.20549 1.34054 1.01766 0.94997 0.93305 1.25559 0.97129 0.96821 0.98169 1.70121 1.45298 1.29679 1.10109 0.85768 0.79061 0.79790 0.78582 1.19247 1.21385 1.20956 1.22971 1.02649 1.04977 0.91508 1.22448 1.01151 0.94534 1.02638 1.23304 0.92188 1.04046 1.00698 1.86916 1.07651 1.78806 1.34751 0.91940 0.92108 0.88583 0.87739 0.91136 0.91133 0.89683 0.83738 0.97738 0.94274 0.93627 0.89139 0.90467 0.92504 0.91228 0.91034 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.23 71.98 0.66 -1.29 16 2 C -0.04 -0.88 3.11 30.63 0.10 -0.78 16 3 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 4 C -0.11 -1.95 5.04 30.49 0.15 -1.80 16 5 C -0.12 -2.77 5.01 30.31 0.15 -2.62 16 6 C 0.09 2.96 2.34 44.81 0.10 3.07 16 7 H 0.04 1.24 7.77 -2.39 -0.02 1.22 16 8 N -0.67 -24.95 6.18 -492.13 -3.04 -27.99 16 9 C 0.13 5.56 5.28 86.30 0.46 6.02 16 10 C 0.02 1.15 1.53 -52.92 -0.08 1.07 16 11 C -0.48 -25.94 8.73 25.60 0.22 -25.72 16 12 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 13 C 0.02 1.23 5.39 84.65 0.46 1.68 16 14 N -0.91 -53.23 12.97 21.45 0.28 -52.95 16 15 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 C -0.18 -7.58 9.96 30.62 0.30 -7.27 16 20 C -0.17 -7.95 9.47 30.62 0.29 -7.66 16 21 C -0.05 -1.84 5.96 72.02 0.43 -1.41 16 22 S -0.31 -9.00 21.71 -56.49 -1.23 -10.22 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.37 8.05 -2.38 -0.02 1.35 16 28 H 0.07 1.64 8.08 -2.38 -0.02 1.62 16 29 H 0.08 1.69 7.85 -2.39 -0.02 1.67 16 30 H 0.34 11.38 8.22 -89.69 -0.74 10.64 16 31 H 0.00 0.19 8.09 -2.39 -0.02 0.17 16 32 H 0.04 2.02 7.25 -2.38 -0.02 2.00 16 33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.07 2.97 7.30 -2.39 -0.02 2.95 16 39 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -61.00 322.94 1.55 -59.45 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.27 Total: 21.71 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.25 Total: -36.70 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.76 Total: -80.94 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.23 Total: -10.22 kcal Total: -61.00 1.55 -59.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594504979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.146 kcal (2) G-P(sol) polarization free energy of solvation -61.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds