Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.57478 * 2 1 4 4 C 1.53093 * 109.57732 * 239.60947 * 2 1 3 5 5 C 1.52586 * 109.95395 * 303.22115 * 4 2 1 6 6 C 1.52579 * 110.72554 * 289.31810 * 5 4 2 7 7 H 1.09001 * 109.31166 * 310.58152 * 6 5 4 8 8 N 1.46898 * 109.39359 * 190.82575 * 6 5 4 9 9 C 1.46897 * 111.00296 * 154.50543 * 8 6 5 10 10 C 1.53001 * 109.47119 * 174.89789 * 9 8 6 11 11 C 1.50699 * 115.54986 * 294.92449 * 10 9 8 12 12 H 1.07991 * 120.00297 * 99.47655 * 11 10 9 13 13 C 1.37883 * 119.99751 * 279.20220 * 11 10 9 14 14 N 1.31517 * 120.00257 * 355.33294 * 13 11 10 15 15 Si 1.86797 * 119.99874 * 175.32366 * 13 11 10 16 16 H 1.48501 * 109.47050 * 90.00151 * 15 13 11 17 17 H 1.48499 * 109.47553 * 210.00154 * 15 13 11 18 18 H 1.48498 * 109.47426 * 330.00436 * 15 13 11 19 19 C 1.53000 * 117.51892 * 80.62632 * 10 9 8 20 20 C 1.53004 * 117.49602 * 149.25575 * 10 9 8 21 21 C 1.53093 * 109.95394 * 70.67923 * 6 5 4 22 22 S 1.81749 * 108.84096 * 296.97242 * 21 6 5 23 23 H 1.09001 * 109.47241 * 299.74712 * 1 2 3 24 24 H 1.09002 * 109.47136 * 59.74534 * 1 2 3 25 25 H 1.09000 * 109.47253 * 179.74548 * 1 2 3 26 26 H 1.09003 * 109.39172 * 63.36712 * 4 2 1 27 27 H 1.08998 * 109.39646 * 183.07097 * 4 2 1 28 28 H 1.09006 * 109.22206 * 169.00368 * 5 4 2 29 29 H 1.08996 * 109.23177 * 49.64650 * 5 4 2 30 30 H 1.00903 * 110.99635 * 30.55679 * 8 6 5 31 31 H 1.09000 * 109.47066 * 54.89964 * 9 8 6 32 32 H 1.09001 * 109.47335 * 294.89586 * 9 8 6 33 33 H 0.96996 * 120.00286 * 180.02562 * 14 13 11 34 34 H 1.08998 * 117.50030 * 214.97121 * 19 10 9 35 35 H 1.08996 * 117.49702 * 359.97438 * 19 10 9 36 36 H 1.08999 * 117.49833 * 359.97438 * 20 10 9 37 37 H 1.08999 * 117.49461 * 145.00015 * 20 10 9 38 38 H 1.09003 * 109.57801 * 56.78176 * 21 6 5 39 39 H 1.09001 * 109.57557 * 177.04152 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0429 -0.7297 -1.2442 5 6 1.4770 -2.1461 -1.2876 6 6 2.1064 -3.0125 -0.2007 7 1 3.1907 -2.9077 -0.2390 8 7 1.7440 -4.4181 -0.4265 9 6 2.7441 -5.3203 0.1597 10 6 2.2707 -6.7682 0.0168 11 6 1.0242 -7.1234 0.7858 12 1 0.0695 -7.1544 0.2821 13 6 1.1037 -7.4142 2.1312 14 7 2.2766 -7.4718 2.7234 15 14 -0.4546 -7.7263 3.1129 16 1 -0.7832 -9.1739 3.0730 17 1 -0.2451 -7.3049 4.5214 18 1 -1.5743 -6.9482 2.5248 19 6 2.4858 -7.4522 -1.3348 20 6 3.3421 -7.8505 -0.1309 21 6 1.6015 -2.5724 1.1759 22 16 2.1389 -0.8629 1.4792 23 1 -0.3634 0.5099 0.8922 24 1 -0.3633 0.5178 -0.8877 25 1 -0.3634 -1.0276 -0.0046 26 1 1.7299 -0.1875 -2.1366 27 1 3.1315 -0.7757 -1.2138 28 1 1.6854 -2.5861 -2.2629 29 1 0.3985 -2.1066 -1.1355 30 1 1.6200 -4.6059 -1.4101 31 1 2.8731 -5.0828 1.2156 32 1 3.6944 -5.1960 -0.3595 33 1 2.3325 -7.6768 3.6698 34 1 1.7259 -8.1591 -1.6678 35 1 2.9644 -6.8706 -2.1226 36 1 4.3842 -7.5309 -0.1267 37 1 3.1453 -8.8193 0.3281 38 1 0.5129 -2.6225 1.1989 39 1 2.0136 -3.2282 1.9429 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594504980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = -3.728185 kcal Electronic energy + Delta-G solvation = -17515.888451 eV Core-core repulsion = 14970.002117 eV Total energy + Delta-G solvation = -2545.886334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50295 -38.17969 -35.51923 -33.91542 -31.55079 -29.69404 -27.74310 -26.70539 -25.23588 -22.96089 -22.39241 -21.20745 -20.65676 -18.05633 -17.79574 -16.70971 -16.61468 -16.16251 -15.76782 -15.39327 -15.06550 -14.83039 -14.39589 -14.06356 -13.80401 -13.64776 -13.46382 -13.01182 -12.83439 -12.74851 -12.59006 -12.43487 -12.36115 -12.09794 -11.99508 -11.67250 -11.48343 -11.14416 -10.88315 -10.55692 -10.34285 -9.90234 -9.14226 -8.70769 -8.03892 -6.10218 0.82506 1.40123 1.43067 1.52082 1.55710 2.46727 3.25044 3.27429 3.62490 3.72136 3.80774 3.91937 3.97439 4.19697 4.37029 4.40318 4.50639 4.53477 4.58801 4.69704 4.75637 4.80352 4.85270 4.89019 4.99769 5.00892 5.04127 5.08237 5.13396 5.19566 5.29499 5.44375 5.65844 5.71269 5.88416 6.30816 6.49300 6.73797 6.93283 7.55070 9.04790 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.006372 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.946379 B = 4393.269359 C = 5038.576894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 H 0.125 0.875 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.095 3.905 7 H 0.037 0.963 8 N -0.671 5.671 9 C 0.126 3.874 10 C 0.025 3.975 11 C -0.476 4.476 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.940 3.060 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.270 1.270 19 C -0.185 4.185 20 C -0.168 4.168 21 C -0.051 4.051 22 S -0.308 6.308 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.343 0.657 31 H 0.037 0.963 32 H 0.006 0.994 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 14.713 -9.114 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 H 0.143 0.857 4 C -0.147 4.147 5 C -0.165 4.165 6 C -0.017 4.017 7 H 0.055 0.945 8 N -0.304 5.304 9 C -0.003 4.003 10 C 0.024 3.976 11 C -0.514 4.514 12 H 0.067 0.933 13 C -0.176 4.176 14 N -0.553 5.553 15 Si 0.767 3.233 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.222 4.222 20 C -0.206 4.206 21 C -0.200 4.200 22 S -0.082 6.082 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.104 15.069 -7.497 16.867 hybrid contribution -0.403 -1.138 -0.295 1.243 sum -1.506 13.930 -7.793 16.033 Atomic orbital electron populations 1.22107 0.92508 1.02538 1.03457 1.23313 0.99344 1.01440 0.92782 0.85724 1.21723 1.01084 0.94487 0.97403 1.21744 1.01598 0.95078 0.98047 1.21611 0.97216 0.88949 0.93908 0.94507 1.60118 1.48563 1.01421 1.20254 1.21169 0.89776 0.92273 0.97088 1.18937 0.95226 0.89259 0.94185 1.20526 0.92604 1.44855 0.93459 0.93348 1.25549 0.97898 0.95446 0.98746 1.70111 1.24307 1.50196 1.10653 0.85832 0.81293 0.78156 0.77999 1.20475 1.21542 1.19460 1.22946 1.02891 1.04815 0.91561 1.22430 0.95021 1.00691 1.02474 1.23291 1.03406 0.92744 1.00606 1.86880 1.78248 1.08201 1.34840 0.91897 0.89384 0.92964 0.87781 0.91201 0.89898 0.90357 0.83701 0.94457 0.97616 0.93626 0.90566 0.89118 0.91325 0.92503 0.90123 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.73 71.98 0.63 -1.99 16 2 C -0.04 -0.79 3.45 30.62 0.11 -0.68 16 3 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.11 -1.91 5.32 30.49 0.16 -1.75 16 5 C -0.13 -2.82 4.86 30.32 0.15 -2.67 16 6 C 0.09 2.92 2.34 44.81 0.10 3.02 16 7 H 0.04 1.21 7.76 -2.39 -0.02 1.19 16 8 N -0.67 -24.70 6.18 -492.14 -3.04 -27.75 16 9 C 0.13 5.56 5.28 86.30 0.46 6.01 16 10 C 0.02 1.19 1.55 -52.93 -0.08 1.11 16 11 C -0.48 -25.99 8.72 25.60 0.22 -25.77 16 12 H 0.05 2.67 7.82 -2.92 -0.02 2.65 16 13 C 0.02 1.25 5.44 84.66 0.46 1.71 16 14 N -0.91 -53.29 12.86 21.45 0.28 -53.02 16 15 Si 0.94 44.74 29.54 68.60 2.03 46.76 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.18 -7.65 9.96 30.60 0.30 -7.34 16 20 C -0.17 -7.92 9.39 30.60 0.29 -7.63 16 21 C -0.05 -1.74 5.59 72.01 0.40 -1.34 16 22 S -0.31 -8.85 21.75 -56.49 -1.23 -10.08 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.10 5.16 -2.39 -0.01 1.09 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 28 H 0.08 1.63 7.85 -2.38 -0.02 1.61 16 29 H 0.08 1.77 5.83 -2.39 -0.01 1.76 16 30 H 0.34 11.31 8.21 -89.69 -0.74 10.57 16 31 H 0.04 1.91 7.29 -2.39 -0.02 1.89 16 32 H 0.01 0.24 8.09 -2.39 -0.02 0.22 16 33 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.08 2.78 7.44 -2.39 -0.02 2.76 16 39 H 0.07 2.88 7.33 -2.39 -0.02 2.86 16 Total: -1.00 -60.84 316.55 1.51 -59.33 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.28 Total: 22.07 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.20 Total: -37.32 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.77 Total: -80.76 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.23 Total: -10.08 kcal Total: -60.84 1.51 -59.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594504980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.602 kcal (2) G-P(sol) polarization free energy of solvation -60.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds