Wall clock time and date at job start Mon Mar 30 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.57790 * 2 1 4 4 C 1.53091 * 109.57609 * 120.25697 * 2 1 3 5 5 C 1.52583 * 109.96011 * 182.96025 * 4 2 1 6 6 C 1.52590 * 110.72395 * 289.32690 * 5 4 2 7 7 H 1.08999 * 109.39054 * 310.62278 * 6 5 4 8 8 N 1.46899 * 109.38900 * 190.82320 * 6 5 4 9 9 C 1.46899 * 111.00340 * 154.99971 * 8 6 5 10 10 C 1.52996 * 109.47148 * 174.89995 * 9 8 6 11 11 C 1.50700 * 115.55203 * 296.15866 * 10 9 8 12 12 H 1.07998 * 119.99815 * 95.20575 * 11 10 9 13 13 C 1.37871 * 119.99911 * 275.20173 * 11 10 9 14 14 N 1.31510 * 120.00265 * 355.13721 * 13 11 10 15 15 Si 1.86805 * 119.99513 * 174.85614 * 13 11 10 16 16 H 1.48494 * 109.47340 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47173 * 120.00378 * 15 13 11 18 18 H 1.48503 * 109.47159 * 240.00200 * 15 13 11 19 19 C 1.53001 * 117.49898 * 81.83423 * 10 9 8 20 20 C 1.53004 * 117.49334 * 150.49058 * 10 9 8 21 21 C 1.53096 * 109.95554 * 70.67308 * 6 5 4 22 22 S 1.81744 * 108.84229 * 296.97490 * 21 6 5 23 23 H 1.09002 * 109.47440 * 299.74694 * 1 2 3 24 24 H 1.09001 * 109.46804 * 59.74262 * 1 2 3 25 25 H 1.08994 * 109.47496 * 179.73951 * 1 2 3 26 26 H 1.09004 * 109.38872 * 62.81087 * 4 2 1 27 27 H 1.09001 * 109.39471 * 303.11021 * 4 2 1 28 28 H 1.08998 * 109.22596 * 169.01032 * 5 4 2 29 29 H 1.08993 * 109.18906 * 49.62382 * 5 4 2 30 30 H 1.00907 * 111.00361 * 31.04501 * 8 6 5 31 31 H 1.09003 * 109.46473 * 54.90016 * 9 8 6 32 32 H 1.08995 * 109.46712 * 294.90611 * 9 8 6 33 33 H 0.97009 * 119.99974 * 179.97438 * 14 13 11 34 34 H 1.08998 * 117.49874 * 215.00023 * 19 10 9 35 35 H 1.09007 * 117.49761 * 0.02562 * 19 10 9 36 36 H 1.08990 * 117.50026 * 359.97438 * 20 10 9 37 37 H 1.09003 * 117.49251 * 144.97860 * 20 10 9 38 38 H 1.08999 * 109.57544 * 56.78350 * 21 6 5 39 39 H 1.09004 * 109.57427 * 177.16839 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0429 -0.7268 1.2459 5 6 3.5669 -0.6683 1.2926 6 6 4.1747 -1.5524 0.2076 7 1 3.7128 -2.5391 0.2439 8 7 5.6199 -1.6818 0.4368 9 6 6.1384 -2.9211 -0.1575 10 6 7.6608 -2.9593 -0.0103 11 6 8.4122 -1.8795 -0.7453 12 1 8.6962 -0.9734 -0.2309 13 6 8.7372 -2.0483 -2.0745 14 7 8.4769 -3.1888 -2.6754 15 14 9.5400 -0.6543 -3.0240 16 1 9.7197 0.5160 -2.1278 17 1 10.8640 -1.0978 -3.5296 18 1 8.6752 -0.2730 -4.1695 19 6 8.2293 -3.4282 1.3305 20 6 8.3255 -4.3330 0.0996 21 6 3.9322 -0.9303 -1.1700 22 16 2.1421 -0.8639 -1.4772 23 1 -0.3634 0.5099 0.8922 24 1 -0.3633 0.5178 -0.8877 25 1 -0.3634 -1.0276 -0.0047 26 1 1.7215 -1.7679 1.2156 27 1 1.6350 -0.2496 2.1370 28 1 3.9095 -1.0114 2.2688 29 1 3.8907 0.3611 1.1400 30 1 5.8356 -1.6352 1.4215 31 1 5.8746 -2.9551 -1.2146 32 1 5.7022 -3.7793 0.3536 33 1 8.7052 -3.3075 -3.6107 34 1 9.1469 -2.9556 1.6810 35 1 7.5187 -3.7099 2.1077 36 1 7.6783 -5.2094 0.0675 37 1 9.3063 -4.4557 -0.3600 38 1 4.3443 0.0785 -1.1928 39 1 4.4118 -1.5401 -1.9357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594504981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:50 Heat of formation + Delta-G solvation = 7.837496 kcal Electronic energy + Delta-G solvation = -17324.097549 eV Core-core repulsion = 14778.712740 eV Total energy + Delta-G solvation = -2545.384809 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.00227 -36.48920 -34.37245 -31.82954 -30.83880 -28.37668 -25.98029 -25.08614 -23.38874 -21.47358 -21.04910 -20.25775 -18.93112 -16.87443 -16.05920 -15.14181 -14.92153 -14.62784 -14.39558 -13.96446 -13.87125 -13.45391 -13.18707 -12.71018 -12.69034 -12.29751 -11.81937 -11.58070 -11.31096 -11.28044 -11.03083 -10.91678 -10.82621 -10.63491 -10.57913 -10.37038 -10.10257 -9.54254 -9.30468 -8.89944 -8.31744 -8.02099 -7.65239 -7.52949 -5.92932 -3.95268 1.89709 2.69636 3.34573 3.43082 3.47576 4.48516 4.51801 4.62547 4.82355 4.96935 5.09572 5.19112 5.36901 5.39435 5.44719 5.49658 5.53334 5.66259 5.76137 5.83778 5.93429 5.96874 6.03766 6.17314 6.24556 6.31019 6.40694 6.50562 6.61145 6.76398 6.89093 7.17319 7.52587 7.56611 7.90380 7.99298 8.10674 8.57415 9.04124 9.68015 11.16190 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.005867 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.504465 B = 4771.046951 C = 5425.130256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.129 4.129 6 C 0.090 3.910 7 H 0.046 0.954 8 N -0.664 5.664 9 C 0.108 3.892 10 C 0.048 3.952 11 C -0.466 4.466 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.285 1.285 19 C -0.217 4.217 20 C -0.152 4.152 21 C -0.059 4.059 22 S -0.279 6.279 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.334 0.666 31 H 0.072 0.928 32 H -0.003 1.003 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.163 4.239 6.960 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 H 0.104 0.896 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.022 4.022 7 H 0.064 0.936 8 N -0.295 5.295 9 C -0.020 4.020 10 C 0.047 3.953 11 C -0.505 4.505 12 H 0.077 0.923 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.254 4.254 20 C -0.190 4.190 21 C -0.207 4.207 22 S -0.053 6.053 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.090 0.910 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.551 4.156 5.337 15.145 hybrid contribution 0.879 0.426 0.902 1.330 sum -12.671 4.582 6.239 14.849 Atomic orbital electron populations 1.21596 0.92246 1.02878 1.02266 1.23153 0.98995 1.01081 0.94935 0.89570 1.21798 0.95678 1.01297 0.96537 1.21704 0.94581 1.01343 0.99086 1.21598 0.90264 0.97261 0.93111 0.93635 1.60255 1.09560 1.40330 1.19345 1.21584 0.95590 0.86166 0.98697 1.18845 0.89722 0.94103 0.92627 1.20316 1.34202 1.01425 0.94513 0.92326 1.24932 0.95674 0.95206 0.97672 1.70026 1.48055 1.23205 1.11134 0.86624 0.78828 0.82944 0.80103 1.19790 1.21393 1.21129 1.22992 1.02480 1.07986 0.91954 1.22494 1.02415 0.94110 1.00026 1.23515 0.90729 1.05428 1.01059 1.86834 1.09341 1.77824 1.31297 0.91463 0.91903 0.91731 0.90834 0.91085 0.91242 0.91037 0.84774 0.90982 0.98517 0.93387 0.90580 0.92336 0.92337 0.89721 0.89322 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.23 37.16 0.34 -0.86 16 2 C -0.05 -0.59 3.11 -26.69 -0.08 -0.68 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.21 5.04 -26.90 -0.14 -1.35 16 5 C -0.13 -1.61 5.02 -27.15 -0.14 -1.75 16 6 C 0.09 1.40 2.34 -67.87 -0.16 1.25 16 7 H 0.05 0.75 7.77 -51.93 -0.40 0.35 16 8 N -0.66 -12.36 6.16 -106.90 -0.66 -13.02 16 9 C 0.11 2.35 5.28 -3.83 -0.02 2.33 16 10 C 0.05 1.15 1.63 -155.66 -0.25 0.90 16 11 C -0.47 -12.59 8.72 -34.44 -0.30 -12.89 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.07 1.83 5.43 -17.82 -0.10 1.73 16 14 N -0.89 -25.17 12.66 55.43 0.70 -24.46 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 C -0.22 -4.68 9.96 -26.69 -0.27 -4.95 16 20 C -0.15 -3.60 9.16 -26.69 -0.24 -3.85 16 21 C -0.06 -0.97 5.96 37.21 0.22 -0.74 16 22 S -0.28 -4.07 21.71 -107.50 -2.33 -6.40 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 29 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.33 5.80 8.22 -39.29 -0.32 5.48 16 31 H 0.07 1.75 7.26 -51.93 -0.38 1.38 16 32 H 0.00 -0.07 8.10 -51.93 -0.42 -0.49 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 2.17 8.14 -51.93 -0.42 1.74 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.11 2.05 7.30 -51.93 -0.38 1.67 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -27.82 322.43 -10.50 -38.32 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.92 Total: 5.09 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.13 Total: -20.85 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.04 Total: -37.48 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.33 Total: -6.40 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.82 -10.50 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594504981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.157 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds