Wall clock time and date at job start Mon Mar 30 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.57790 * 2 1 4 4 C 1.53091 * 109.57609 * 120.25697 * 2 1 3 5 5 C 1.52583 * 109.96011 * 182.96025 * 4 2 1 6 6 C 1.52590 * 110.72395 * 289.32690 * 5 4 2 7 7 H 1.08999 * 109.39054 * 310.62278 * 6 5 4 8 8 N 1.46899 * 109.38900 * 190.82320 * 6 5 4 9 9 C 1.46899 * 111.00340 * 154.99971 * 8 6 5 10 10 C 1.52996 * 109.47148 * 174.89995 * 9 8 6 11 11 C 1.50700 * 115.55203 * 296.15866 * 10 9 8 12 12 H 1.07998 * 119.99815 * 95.20575 * 11 10 9 13 13 C 1.37871 * 119.99911 * 275.20173 * 11 10 9 14 14 N 1.31510 * 120.00265 * 355.13721 * 13 11 10 15 15 Si 1.86805 * 119.99513 * 174.85614 * 13 11 10 16 16 H 1.48494 * 109.47340 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47173 * 120.00378 * 15 13 11 18 18 H 1.48503 * 109.47159 * 240.00200 * 15 13 11 19 19 C 1.53001 * 117.49898 * 81.83423 * 10 9 8 20 20 C 1.53004 * 117.49334 * 150.49058 * 10 9 8 21 21 C 1.53096 * 109.95554 * 70.67308 * 6 5 4 22 22 S 1.81744 * 108.84229 * 296.97490 * 21 6 5 23 23 H 1.09002 * 109.47440 * 299.74694 * 1 2 3 24 24 H 1.09001 * 109.46804 * 59.74262 * 1 2 3 25 25 H 1.08994 * 109.47496 * 179.73951 * 1 2 3 26 26 H 1.09004 * 109.38872 * 62.81087 * 4 2 1 27 27 H 1.09001 * 109.39471 * 303.11021 * 4 2 1 28 28 H 1.08998 * 109.22596 * 169.01032 * 5 4 2 29 29 H 1.08993 * 109.18906 * 49.62382 * 5 4 2 30 30 H 1.00907 * 111.00361 * 31.04501 * 8 6 5 31 31 H 1.09003 * 109.46473 * 54.90016 * 9 8 6 32 32 H 1.08995 * 109.46712 * 294.90611 * 9 8 6 33 33 H 0.97009 * 119.99974 * 179.97438 * 14 13 11 34 34 H 1.08998 * 117.49874 * 215.00023 * 19 10 9 35 35 H 1.09007 * 117.49761 * 0.02562 * 19 10 9 36 36 H 1.08990 * 117.50026 * 359.97438 * 20 10 9 37 37 H 1.09003 * 117.49251 * 144.97860 * 20 10 9 38 38 H 1.08999 * 109.57544 * 56.78350 * 21 6 5 39 39 H 1.09004 * 109.57427 * 177.16839 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0429 -0.7268 1.2459 5 6 3.5669 -0.6683 1.2926 6 6 4.1747 -1.5524 0.2076 7 1 3.7128 -2.5391 0.2439 8 7 5.6199 -1.6818 0.4368 9 6 6.1384 -2.9211 -0.1575 10 6 7.6608 -2.9593 -0.0103 11 6 8.4122 -1.8795 -0.7453 12 1 8.6962 -0.9734 -0.2309 13 6 8.7372 -2.0483 -2.0745 14 7 8.4769 -3.1888 -2.6754 15 14 9.5400 -0.6543 -3.0240 16 1 9.7197 0.5160 -2.1278 17 1 10.8640 -1.0978 -3.5296 18 1 8.6752 -0.2730 -4.1695 19 6 8.2293 -3.4282 1.3305 20 6 8.3255 -4.3330 0.0996 21 6 3.9322 -0.9303 -1.1700 22 16 2.1421 -0.8639 -1.4772 23 1 -0.3634 0.5099 0.8922 24 1 -0.3633 0.5178 -0.8877 25 1 -0.3634 -1.0276 -0.0047 26 1 1.7215 -1.7679 1.2156 27 1 1.6350 -0.2496 2.1370 28 1 3.9095 -1.0114 2.2688 29 1 3.8907 0.3611 1.1400 30 1 5.8356 -1.6352 1.4215 31 1 5.8746 -2.9551 -1.2146 32 1 5.7022 -3.7793 0.3536 33 1 8.7052 -3.3075 -3.6107 34 1 9.1469 -2.9556 1.6810 35 1 7.5187 -3.7099 2.1077 36 1 7.6783 -5.2094 0.0675 37 1 9.3063 -4.4557 -0.3600 38 1 4.3443 0.0785 -1.1928 39 1 4.4118 -1.5401 -1.9357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594504981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:50 Heat of formation + Delta-G solvation = -7.229518 kcal Electronic energy + Delta-G solvation = -17324.750904 eV Core-core repulsion = 14778.712740 eV Total energy + Delta-G solvation = -2546.038164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39858 -38.03669 -35.56022 -33.90653 -32.08738 -29.52806 -27.79227 -26.71119 -24.63656 -22.89016 -22.40763 -21.55159 -20.80711 -18.16165 -17.83912 -16.68086 -16.26176 -16.17056 -15.88562 -15.19630 -15.05190 -14.86516 -14.81425 -13.97950 -13.84393 -13.83448 -13.25485 -12.99112 -12.85548 -12.63682 -12.54629 -12.36850 -12.24559 -12.07227 -12.00257 -11.90013 -11.67015 -11.15416 -10.88679 -10.60614 -10.33031 -9.89989 -9.15278 -8.71811 -8.03749 -6.10301 0.78257 1.39222 1.42961 1.52700 1.56540 2.46540 3.25098 3.26526 3.61398 3.69139 3.80722 3.86405 3.99879 4.22287 4.33659 4.40227 4.48480 4.53541 4.62715 4.68257 4.74848 4.79190 4.82450 4.89414 4.99745 5.01018 5.02431 5.07920 5.10388 5.24773 5.30980 5.32753 5.68061 5.71833 5.87527 6.29707 6.49633 6.72617 6.93721 7.55113 9.04785 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024101 B = 0.005867 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.504465 B = 4771.046951 C = 5425.130256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.044 4.044 3 H 0.092 0.908 4 C -0.108 4.108 5 C -0.123 4.123 6 C 0.094 3.906 7 H 0.039 0.961 8 N -0.672 5.672 9 C 0.126 3.874 10 C 0.021 3.979 11 C -0.473 4.473 12 H 0.048 0.952 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.941 3.059 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.287 1.287 19 C -0.185 4.185 20 C -0.163 4.163 21 C -0.055 4.055 22 S -0.307 6.307 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.035 0.965 32 H 0.008 0.992 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 5.379 9.087 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.017 4.017 7 H 0.057 0.943 8 N -0.304 5.304 9 C -0.003 4.003 10 C 0.020 3.980 11 C -0.512 4.512 12 H 0.067 0.933 13 C -0.177 4.177 14 N -0.553 5.553 15 Si 0.768 3.232 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.213 1.213 19 C -0.223 4.223 20 C -0.201 4.201 21 C -0.204 4.204 22 S -0.081 6.081 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.048 5.307 7.480 17.623 hybrid contribution 1.306 0.093 0.267 1.336 sum -13.742 5.400 7.748 16.674 Atomic orbital electron populations 1.21611 0.90291 1.03174 1.03559 1.23339 1.00331 1.00684 0.92835 0.88995 1.21782 0.94089 1.01471 0.97354 1.21664 0.95861 1.00295 0.98225 1.21620 0.88561 0.97696 0.93840 0.94335 1.60112 1.11678 1.38711 1.19897 1.21186 0.94207 0.87990 0.96955 1.18970 0.90873 0.93541 0.94615 1.20542 1.34020 1.01731 0.94869 0.93347 1.25555 0.96543 0.97015 0.98624 1.70127 1.49367 1.24678 1.11162 0.85765 0.77933 0.80689 0.78790 1.19262 1.21063 1.21344 1.22974 1.02587 1.05340 0.91360 1.22386 1.01250 0.94599 1.01853 1.23316 0.92243 1.04104 1.00703 1.86917 1.07625 1.78806 1.34741 0.88600 0.92112 0.91929 0.91111 0.87777 0.89673 0.91136 0.83636 0.94624 0.97421 0.93639 0.90639 0.89151 0.91366 0.92441 0.90208 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.23 71.98 0.66 -1.26 16 2 C -0.04 -0.86 3.11 30.62 0.10 -0.77 16 3 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.11 -1.92 5.04 30.49 0.15 -1.77 16 5 C -0.12 -2.74 5.02 30.32 0.15 -2.59 16 6 C 0.09 2.90 2.34 44.81 0.10 3.01 16 7 H 0.04 1.25 7.77 -2.39 -0.02 1.23 16 8 N -0.67 -24.67 6.16 -492.12 -3.03 -27.70 16 9 C 0.13 5.52 5.28 86.30 0.46 5.97 16 10 C 0.02 1.00 1.63 -52.93 -0.09 0.91 16 11 C -0.47 -25.85 8.72 25.60 0.22 -25.62 16 12 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 13 C 0.02 1.19 5.43 84.65 0.46 1.65 16 14 N -0.91 -53.36 12.66 21.44 0.27 -53.08 16 15 Si 0.94 44.88 29.54 68.60 2.03 46.90 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 19 C -0.19 -7.70 9.96 30.62 0.30 -7.39 16 20 C -0.16 -7.71 9.16 30.62 0.28 -7.43 16 21 C -0.05 -1.85 5.96 72.01 0.43 -1.42 16 22 S -0.31 -8.85 21.71 -56.49 -1.23 -10.08 16 23 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.36 8.06 -2.38 -0.02 1.34 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.67 7.85 -2.39 -0.02 1.65 16 29 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.34 11.32 8.22 -89.69 -0.74 10.58 16 31 H 0.04 1.80 7.26 -2.39 -0.02 1.79 16 32 H 0.01 0.32 8.10 -2.39 -0.02 0.30 16 33 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.07 2.93 7.30 -2.39 -0.02 2.91 16 Total: -1.00 -61.05 322.43 1.54 -59.51 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.27 Total: 21.17 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.24 Total: -36.71 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -2.76 Total: -80.78 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.23 Total: -10.08 kcal Total: -61.05 1.54 -59.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594504981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.276 kcal (2) G-P(sol) polarization free energy of solvation -61.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds